RNA–Protein interactions for RNA: ENST00000550219.1

NUP188-211, Transcript of nucleoporin 188, humanhuman

TSL 1 (best)

Gene NUP188, Length 886 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP188-211ENST00000550219 NISCHQ9Y2I1 1504 aa33.37■■■□□ 2.93
NUP188-211ENST00000550219 CCDC180Q9P1Z9 1646 aa29.93■■■□□ 2.38
NUP188-211ENST00000550219 ABCC9O60706 1549 aa29.88■■■□□ 2.37
NUP188-211ENST00000550219 RB1CC1Q8TDY2 1594 aa28.45■■■□□ 2.14
NUP188-211ENST00000550219 NACADO15069 1562 aa28.24■■■□□ 2.11
NUP188-211ENST00000550219 DCAF8L2P0C7V8 631 aa28.16■■■□□ 2.1
NUP188-211ENST00000550219 DNAJC5BQ9UF47 199 aa27.83■■■□□ 2.05
NUP188-211ENST00000550219 UNC13AQ9UPW8 1703 aa27.82■■■□□ 2.04
NUP188-211ENST00000550219 MYO15BQ96JP2 1530 aa27.82■■■□□ 2.04
NUP188-211ENST00000550219 PABPN1Q86U42 306 aaKnown RBP eCLIP27.8■■■□□ 2.04
NUP188-211ENST00000550219 ZCCHC6Q5VYS8 1495 aaKnown RBP27.7■■■□□ 2.03
NUP188-211ENST00000550219 BICRAQ9NZM4 1560 aa27.6■■■□□ 2.01
NUP188-211ENST00000550219 DCAF1Q9Y4B6 1507 aa27.52■■■□□ 2
NUP188-211ENST00000550219 SCRIBQ14160 1630 aa27.36■■□□□ 1.97
NUP188-211ENST00000550219 SHROOM4Q9ULL8 1493 aa27.2■■□□□ 1.95
NUP188-211ENST00000550219 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
NUP188-211ENST00000550219 EIF4G1Q04637 1599 aaKnown RBP26.93■■□□□ 1.9
NUP188-211ENST00000550219 CECR2Q9BXF3 1484 aa26.87■■□□□ 1.89
NUP188-211ENST00000550219 SMARCA4P51532 1647 aa26.06■■□□□ 1.76
NUP188-211ENST00000550219 NCAPD3P42695 1498 aa26.03■■□□□ 1.76
NUP188-211ENST00000550219 ATAD2BQ9ULI0 1458 aa26.01■■□□□ 1.75
NUP188-211ENST00000550219 SMARCA2P51531 1590 aa25.96■■□□□ 1.75
NUP188-211ENST00000550219 BAZ1AQ9NRL2 1556 aaPredicted RBP25.92■■□□□ 1.74
NUP188-211ENST00000550219 HMGXB3Q12766 1538 aa25.91■■□□□ 1.74
NUP188-211ENST00000550219 ERCC6Q03468 1493 aa25.81■■□□□ 1.72
NUP188-211ENST00000550219 BAZ1BQ9UIG0 1483 aaKnown RBP25.81■■□□□ 1.72
NUP188-211ENST00000550219 MROH2BQ7Z745 1585 aa25.74■■□□□ 1.71
NUP188-211ENST00000550219 PEG3Q9GZU2 1588 aa25.73■■□□□ 1.71
NUP188-211ENST00000550219 NESP48681 1621 aa25.69■■□□□ 1.7
NUP188-211ENST00000550219 CUX2O14529 1486 aa25.66■■□□□ 1.7
NUP188-211ENST00000550219 LAMC3Q9Y6N6 1575 aa25.49■■□□□ 1.67
NUP188-211ENST00000550219 WIZO95785 1651 aa25.46■■□□□ 1.67
NUP188-211ENST00000550219 DNAJC5Q9H3Z4 198 aa25.46■■□□□ 1.67
NUP188-211ENST00000550219 THOC2Q8NI27 1593 aaKnown RBP25.42■■□□□ 1.66
NUP188-211ENST00000550219 KIF21AQ7Z4S6 1674 aa25.39■■□□□ 1.65
NUP188-211ENST00000550219 PDS5BQ9NTI5 1447 aa25.32■■□□□ 1.64
NUP188-211ENST00000550219 CADPSQ9ULU8 1353 aa25.26■■□□□ 1.63
NUP188-211ENST00000550219 RSF1Q96T23 1441 aaPredicted RBP25.2■■□□□ 1.63
NUP188-211ENST00000550219 TOP2AP11388 1531 aaKnown RBP25.14■■□□□ 1.62
NUP188-211ENST00000550219 MRC2Q9UBG0 1479 aa25.14■■□□□ 1.61
NUP188-211ENST00000550219 CEP164Q9UPV0 1460 aa25.08■■□□□ 1.6
NUP188-211ENST00000550219 WDR62O43379 1518 aa25.07■■□□□ 1.6
NUP188-211ENST00000550219 FANCD2Q9BXW9 1451 aa25.03■■□□□ 1.6
NUP188-211ENST00000550219 CFTRP13569 1480 aa25.01■■□□□ 1.59
NUP188-211ENST00000550219 PRDM2Q13029 1718 aa24.83■■□□□ 1.57
NUP188-211ENST00000550219 URB2Q14146 1524 aaKnown RBP24.82■■□□□ 1.56
NUP188-211ENST00000550219 CCDC88BA6NC98 1476 aa24.82■■□□□ 1.56
NUP188-211ENST00000550219 TOPBP1Q92547 1522 aa24.57■■□□□ 1.52
NUP188-211ENST00000550219 IFT140Q96RY7 1462 aa24.53■■□□□ 1.52
NUP188-211ENST00000550219 TRIM41Q8WV44 630 aa24.52■■□□□ 1.52
NUP188-211ENST00000550219 ZNF608Q9ULD9 1512 aaPredicted RBP24.51■■□□□ 1.51
NUP188-211ENST00000550219 DNMBPQ6XZF7 1577 aa24.5■■□□□ 1.51
NUP188-211ENST00000550219 ABCC8Q09428 1581 aa24.46■■□□□ 1.51
NUP188-211ENST00000550219 OSCARQ8IYS5 282 aa24.45■■□□□ 1.5
NUP188-211ENST00000550219 EIF4G3O43432 1585 aaKnown RBP24.42■■□□□ 1.5
NUP188-211ENST00000550219 TARBP1Q13395 1621 aaKnown RBP24.33■■□□□ 1.49
NUP188-211ENST00000550219 POLA1P09884 1462 aaPredicted RBP24.32■■□□□ 1.48
NUP188-211ENST00000550219 AQRO60306 1485 aaKnown RBP eCLIP24.27■■□□□ 1.48
NUP188-211ENST00000550219 RAD54L2Q9Y4B4 1467 aa24.25■■□□□ 1.47
NUP188-211ENST00000550219 RIMBP3CA6NJZ7 1639 aa24.23■■□□□ 1.47
NUP188-211ENST00000550219 RIMBP3BA6NNM3 1639 aa24.23■■□□□ 1.47
NUP188-211ENST00000550219 RIMBP3Q9UFD9 1639 aa24.23■■□□□ 1.47
NUP188-211ENST00000550219 CHD1O14646 1710 aa24.22■■□□□ 1.47
NUP188-211ENST00000550219 SUPT5HO00267 1087 aaKnown RBP24.22■■□□□ 1.47
NUP188-211ENST00000550219 FGD5Q6ZNL6 1462 aa24.2■■□□□ 1.47
NUP188-211ENST00000550219 CUX1P39880 1505 aa24.2■■□□□ 1.46
NUP188-211ENST00000550219 SOGA1O94964 1423 aa24.18■■□□□ 1.46
NUP188-211ENST00000550219 ARHGEF11O15085 1522 aa24.15■■□□□ 1.46
NUP188-211ENST00000550219 TDRD9Q8NDG6 1382 aaKnown RBP24.15■■□□□ 1.46
NUP188-211ENST00000550219 FBLN2P98095 1184 aa24.13■■□□□ 1.45
NUP188-211ENST00000550219 SNAPC4Q5SXM2 1469 aa24.08■■□□□ 1.45
NUP188-211ENST00000550219 WDR97A6NE52 1622 aa24.08■■□□□ 1.45
NUP188-211ENST00000550219 GRIN2BQ13224 1484 aa23.99■■□□□ 1.43
NUP188-211ENST00000550219 MAGI1Q96QZ7 1491 aaPredicted RBP23.97■■□□□ 1.43
NUP188-211ENST00000550219 PBRM1Q86U86 1689 aa23.96■■□□□ 1.43
NUP188-211ENST00000550219 CYB5RLQ6IPT4 315 aa23.92■■□□□ 1.42
NUP188-211ENST00000550219 CHMP7Q8WUX9 453 aaPredicted RBP23.92■■□□□ 1.42
NUP188-211ENST00000550219 GAPVD1Q14C86 1478 aa23.92■■□□□ 1.42
NUP188-211ENST00000550219 ARAP1Q96P48 1450 aa23.92■■□□□ 1.42
NUP188-211ENST00000550219 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
NUP188-211ENST00000550219 CLASP1Q7Z460 1538 aa23.9■■□□□ 1.42
NUP188-211ENST00000550219 ABCA5Q8WWZ7 1642 aa23.9■■□□□ 1.42
NUP188-211ENST00000550219 ABCA10Q8WWZ4 1543 aa23.89■■□□□ 1.42
NUP188-211ENST00000550219 SYNJ2O15056 1496 aa23.89■■□□□ 1.42
NUP188-211ENST00000550219 BIVM-ERCC5R4GMW8 1640 aa23.83■■□□□ 1.41
NUP188-211ENST00000550219 WRNQ14191 1432 aaPredicted RBP eCLIP23.82■■□□□ 1.4
NUP188-211ENST00000550219 TOP2BQ02880 1626 aa23.81■■□□□ 1.4
NUP188-211ENST00000550219 ADAMTS12P58397 1594 aa23.74■■□□□ 1.39
NUP188-211ENST00000550219 GRIN2AQ12879 1464 aa23.69■■□□□ 1.38
NUP188-211ENST00000550219 TRHP20396 242 aaPredicted RBP23.68■■□□□ 1.38
NUP188-211ENST00000550219 CEP170Q5SW79 1584 aa23.63■■□□□ 1.37
NUP188-211ENST00000550219 FHAD1B1AJZ9 1412 aa23.6■■□□□ 1.37
NUP188-211ENST00000550219 ERICH3Q5RHP9 1530 aa23.6■■□□□ 1.37
NUP188-211ENST00000550219 NUP160Q12769 1436 aa23.58■■□□□ 1.36
NUP188-211ENST00000550219 ERCC6L2Q5T890 1561 aa23.57■■□□□ 1.36
NUP188-211ENST00000550219 SHROOM2Q13796 1616 aa23.48■■□□□ 1.35
NUP188-211ENST00000550219 RUSC2Q8N2Y8 1516 aa23.4■■□□□ 1.34
NUP188-211ENST00000550219 PRG4Q92954 1404 aaPredicted RBP23.36■■□□□ 1.33
NUP188-211ENST00000550219 KIF27Q86VH2 1401 aa23.34■■□□□ 1.33
NUP188-211ENST00000550219 CUL7Q14999 1698 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms