RNA–Protein interactions for RNA: ENST00000549686.5

LETMD1-220, Transcript of LETM1 domain containing 1, humanhuman

TSL 2

Gene LETMD1, Length 563 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-220ENST00000549686 NISCHQ9Y2I1 1504 aa40.48■■■■■ 4.07
LETMD1-220ENST00000549686 CCDC180Q9P1Z9 1646 aa35.58■■■■□ 3.29
LETMD1-220ENST00000549686 ABCC9O60706 1549 aa33.95■■■■□ 3.03
LETMD1-220ENST00000549686 ZCCHC6Q5VYS8 1495 aaKnown RBP33.91■■■■□ 3.02
LETMD1-220ENST00000549686 DCAF1Q9Y4B6 1507 aa33.6■■■□□ 2.97
LETMD1-220ENST00000549686 MYO15BQ96JP2 1530 aa33.44■■■□□ 2.94
LETMD1-220ENST00000549686 DCAF8L2P0C7V8 631 aa33.44■■■□□ 2.94
LETMD1-220ENST00000549686 NACADO15069 1562 aa33.3■■■□□ 2.92
LETMD1-220ENST00000549686 RB1CC1Q8TDY2 1594 aa33.1■■■□□ 2.89
LETMD1-220ENST00000549686 SCRIBQ14160 1630 aa32.48■■■□□ 2.79
LETMD1-220ENST00000549686 SHROOM4Q9ULL8 1493 aa32.44■■■□□ 2.78
LETMD1-220ENST00000549686 UNC13AQ9UPW8 1703 aa32.18■■■□□ 2.74
LETMD1-220ENST00000549686 BICRAQ9NZM4 1560 aa31.99■■■□□ 2.71
LETMD1-220ENST00000549686 PABPN1Q86U42 306 aaKnown RBP eCLIP31.88■■■□□ 2.69
LETMD1-220ENST00000549686 CECR2Q9BXF3 1484 aa31.38■■■□□ 2.61
LETMD1-220ENST00000549686 BAZ1AQ9NRL2 1556 aaPredicted RBP31.34■■■□□ 2.61
LETMD1-220ENST00000549686 SMARCA4P51532 1647 aa31.19■■■□□ 2.58
LETMD1-220ENST00000549686 RSF1Q96T23 1441 aaPredicted RBP31.18■■■□□ 2.58
LETMD1-220ENST00000549686 MROH2BQ7Z745 1585 aa31.17■■■□□ 2.58
LETMD1-220ENST00000549686 EIF4G1Q04637 1599 aaKnown RBP31.12■■■□□ 2.57
LETMD1-220ENST00000549686 SUPT5HO00267 1087 aaKnown RBP31.02■■■□□ 2.56
LETMD1-220ENST00000549686 PEG3Q9GZU2 1588 aa30.92■■■□□ 2.54
LETMD1-220ENST00000549686 SMARCA2P51531 1590 aa30.88■■■□□ 2.53
LETMD1-220ENST00000549686 ATAD2BQ9ULI0 1458 aa30.84■■■□□ 2.53
LETMD1-220ENST00000549686 WIZO95785 1651 aa30.83■■■□□ 2.53
LETMD1-220ENST00000549686 CC2D2AQ9P2K1 1620 aa30.74■■■□□ 2.51
LETMD1-220ENST00000549686 NCAPD3P42695 1498 aa30.73■■■□□ 2.51
LETMD1-220ENST00000549686 TOP2AP11388 1531 aaKnown RBP30.65■■■□□ 2.5
LETMD1-220ENST00000549686 BAZ1BQ9UIG0 1483 aaKnown RBP30.64■■■□□ 2.5
LETMD1-220ENST00000549686 HMGXB3Q12766 1538 aa30.64■■■□□ 2.5
LETMD1-220ENST00000549686 DNAJC5BQ9UF47 199 aa30.33■■■□□ 2.45
LETMD1-220ENST00000549686 CCDC88BA6NC98 1476 aa30.27■■■□□ 2.44
LETMD1-220ENST00000549686 CADPSQ9ULU8 1353 aa29.89■■■□□ 2.37
LETMD1-220ENST00000549686 CFTRP13569 1480 aa29.87■■■□□ 2.37
LETMD1-220ENST00000549686 LAMC3Q9Y6N6 1575 aa29.75■■■□□ 2.35
LETMD1-220ENST00000549686 NESP48681 1621 aa29.6■■■□□ 2.33
LETMD1-220ENST00000549686 PRDM2Q13029 1718 aa29.6■■■□□ 2.33
LETMD1-220ENST00000549686 PDS5BQ9NTI5 1447 aa29.57■■■□□ 2.32
LETMD1-220ENST00000549686 FANCD2Q9BXW9 1451 aa29.5■■■□□ 2.31
LETMD1-220ENST00000549686 CHIC1Q5VXU3 224 aa29.49■■■□□ 2.31
LETMD1-220ENST00000549686 CEP164Q9UPV0 1460 aa29.4■■■□□ 2.3
LETMD1-220ENST00000549686 WRNQ14191 1432 aaPredicted RBP eCLIP29.39■■■□□ 2.3
LETMD1-220ENST00000549686 ABCC8Q09428 1581 aa29.36■■■□□ 2.29
LETMD1-220ENST00000549686 TRIM41Q8WV44 630 aa29.32■■■□□ 2.28
LETMD1-220ENST00000549686 ERCC6Q03468 1493 aa29.25■■■□□ 2.27
LETMD1-220ENST00000549686 KIF21AQ7Z4S6 1674 aa29.24■■■□□ 2.27
LETMD1-220ENST00000549686 TOP2BQ02880 1626 aa29.2■■■□□ 2.26
LETMD1-220ENST00000549686 CUX1P39880 1505 aa29.2■■■□□ 2.26
LETMD1-220ENST00000549686 SYNJ1O43426 1573 aa29.18■■■□□ 2.26
LETMD1-220ENST00000549686 MRC2Q9UBG0 1479 aa29.17■■■□□ 2.26
LETMD1-220ENST00000549686 DNMBPQ6XZF7 1577 aa29.17■■■□□ 2.26
LETMD1-220ENST00000549686 BIVM-ERCC5R4GMW8 1640 aa29.16■■■□□ 2.26
LETMD1-220ENST00000549686 URB2Q14146 1524 aaKnown RBP29.12■■■□□ 2.25
LETMD1-220ENST00000549686 TOPBP1Q92547 1522 aa29.12■■■□□ 2.25
LETMD1-220ENST00000549686 WDR62O43379 1518 aa29.03■■■□□ 2.24
LETMD1-220ENST00000549686 THOC2Q8NI27 1593 aaKnown RBP28.99■■■□□ 2.23
LETMD1-220ENST00000549686 FGD5Q6ZNL6 1462 aa28.98■■■□□ 2.23
LETMD1-220ENST00000549686 POLA1P09884 1462 aaPredicted RBP28.93■■■□□ 2.22
LETMD1-220ENST00000549686 SOGA1O94964 1423 aa28.86■■■□□ 2.21
LETMD1-220ENST00000549686 EEA1Q15075 1411 aa28.82■■■□□ 2.2
LETMD1-220ENST00000549686 ABCA10Q8WWZ4 1543 aa28.79■■■□□ 2.2
LETMD1-220ENST00000549686 IFT140Q96RY7 1462 aa28.78■■■□□ 2.2
LETMD1-220ENST00000549686 CUX2O14529 1486 aa28.76■■■□□ 2.19
LETMD1-220ENST00000549686 RAD54L2Q9Y4B4 1467 aa28.76■■■□□ 2.19
LETMD1-220ENST00000549686 KIF27Q86VH2 1401 aa28.75■■■□□ 2.19
LETMD1-220ENST00000549686 TARBP1Q13395 1621 aaKnown RBP28.69■■■□□ 2.18
LETMD1-220ENST00000549686 WDR97A6NE52 1622 aa28.64■■■□□ 2.18
LETMD1-220ENST00000549686 RUSC2Q8N2Y8 1516 aa28.62■■■□□ 2.17
LETMD1-220ENST00000549686 FAM9AQ8IZU1 332 aaPredicted RBP28.6■■■□□ 2.17
LETMD1-220ENST00000549686 CSRNP3Q8WYN3 585 aa28.6■■■□□ 2.17
LETMD1-220ENST00000549686 TDRD9Q8NDG6 1382 aaKnown RBP28.55■■■□□ 2.16
LETMD1-220ENST00000549686 ABCA5Q8WWZ7 1642 aa28.54■■■□□ 2.16
LETMD1-220ENST00000549686 GAPVD1Q14C86 1478 aa28.53■■■□□ 2.16
LETMD1-220ENST00000549686 IGF1RP08069 1367 aa28.49■■■□□ 2.15
LETMD1-220ENST00000549686 ZNF608Q9ULD9 1512 aaPredicted RBP28.48■■■□□ 2.15
LETMD1-220ENST00000549686 ERICH3Q5RHP9 1530 aa28.46■■■□□ 2.15
LETMD1-220ENST00000549686 AQRO60306 1485 aaKnown RBP eCLIP28.45■■■□□ 2.141e-6■■□□□ 12.7
LETMD1-220ENST00000549686 GRIN2BQ13224 1484 aa28.43■■■□□ 2.14
LETMD1-220ENST00000549686 EIF4G3O43432 1585 aaKnown RBP28.4■■■□□ 2.14
LETMD1-220ENST00000549686 PRXQ9BXM0 1461 aa28.39■■■□□ 2.13
LETMD1-220ENST00000549686 KIF21BO75037 1637 aa28.36■■■□□ 2.13
LETMD1-220ENST00000549686 CARMIL1Q5VZK9 1371 aa28.35■■■□□ 2.13
LETMD1-220ENST00000549686 CUL7Q14999 1698 aa28.34■■■□□ 2.13
LETMD1-220ENST00000549686 PBRM1Q86U86 1689 aa28.31■■■□□ 2.12
LETMD1-220ENST00000549686 GOLGA3Q08378 1498 aa28.3■■■□□ 2.12
LETMD1-220ENST00000549686 MAGI1Q96QZ7 1491 aaPredicted RBP28.27■■■□□ 2.12
LETMD1-220ENST00000549686 RAPGEF2Q9Y4G8 1499 aa28.27■■■□□ 2.12
LETMD1-220ENST00000549686 FHAD1B1AJZ9 1412 aa28.26■■■□□ 2.12
LETMD1-220ENST00000549686 SNAPC4Q5SXM2 1469 aa28.22■■■□□ 2.11
LETMD1-220ENST00000549686 LOC105371045A0A1W2PR82 267 aa28.22■■■□□ 2.11
LETMD1-220ENST00000549686 ADAMTS12P58397 1594 aa28.2■■■□□ 2.11
LETMD1-220ENST00000549686 SYNJ2O15056 1496 aa28.14■■■□□ 2.09
LETMD1-220ENST00000549686 UBTFP17480 764 aaKnown RBP28.13■■■□□ 2.09
LETMD1-220ENST00000549686 TNIKQ9UKE5 1360 aa28.12■■■□□ 2.09
LETMD1-220ENST00000549686 EHMT2Q96KQ7 1210 aa28.1■■■□□ 2.09
LETMD1-220ENST00000549686 CHMP7Q8WUX9 453 aaPredicted RBP28.07■■■□□ 2.08
LETMD1-220ENST00000549686 GRIN2AQ12879 1464 aa28.03■■■□□ 2.08
LETMD1-220ENST00000549686 FBLN2P98095 1184 aa27.96■■■□□ 2.07
LETMD1-220ENST00000549686 NUP160Q12769 1436 aa27.9■■■□□ 2.06
LETMD1-220ENST00000549686 CEP162Q5TB80 1403 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms