RNA–Protein interactions for RNA: ENST00000549612.5

ATF1-202, Transcript of activating transcription factor 1, humanhuman

TSL 5

Gene ATF1, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATF1-202ENST00000549612 NISCHQ9Y2I1 1504 aa48.51■■■■■ 5.36
ATF1-202ENST00000549612 CCDC180Q9P1Z9 1646 aa43.37■■■■■ 4.53
ATF1-202ENST00000549612 ABCC9O60706 1549 aa42.95■■■■■ 4.47
ATF1-202ENST00000549612 RB1CC1Q8TDY2 1594 aa41.08■■■■■ 4.17
ATF1-202ENST00000549612 NACADO15069 1562 aa40.91■■■■■ 4.14
ATF1-202ENST00000549612 DCAF8L2P0C7V8 631 aa40.65■■■■■ 4.1
ATF1-202ENST00000549612 MYO15BQ96JP2 1530 aa40.54■■■■■ 4.08
ATF1-202ENST00000549612 ZCCHC6Q5VYS8 1495 aaKnown RBP40.3■■■■■ 4.04
ATF1-202ENST00000549612 DCAF1Q9Y4B6 1507 aa40.14■■■■■ 4.02
ATF1-202ENST00000549612 UNC13AQ9UPW8 1703 aa40.1■■■■■ 4.01
ATF1-202ENST00000549612 PABPN1Q86U42 306 aaKnown RBP eCLIP40.03■■■■■ 4
ATF1-202ENST00000549612 DNAJC5BQ9UF47 199 aa39.96■■■■□ 3.99
ATF1-202ENST00000549612 BICRAQ9NZM4 1560 aa39.89■■■■□ 3.98
ATF1-202ENST00000549612 SCRIBQ14160 1630 aa39.49■■■■□ 3.91
ATF1-202ENST00000549612 SHROOM4Q9ULL8 1493 aa39.47■■■■□ 3.91
ATF1-202ENST00000549612 EIF4G1Q04637 1599 aaKnown RBP38.87■■■■□ 3.81
ATF1-202ENST00000549612 CC2D2AQ9P2K1 1620 aa38.83■■■■□ 3.81
ATF1-202ENST00000549612 CECR2Q9BXF3 1484 aa38.68■■■■□ 3.78
ATF1-202ENST00000549612 NCAPD3P42695 1498 aa37.78■■■■□ 3.64
ATF1-202ENST00000549612 SMARCA4P51532 1647 aa37.75■■■■□ 3.63
ATF1-202ENST00000549612 ATAD2BQ9ULI0 1458 aa37.71■■■■□ 3.63
ATF1-202ENST00000549612 BAZ1AQ9NRL2 1556 aaPredicted RBP37.63■■■■□ 3.62
ATF1-202ENST00000549612 SMARCA2P51531 1590 aa37.62■■■■□ 3.61
ATF1-202ENST00000549612 HMGXB3Q12766 1538 aa37.54■■■■□ 3.6
ATF1-202ENST00000549612 PEG3Q9GZU2 1588 aa37.42■■■■□ 3.58
ATF1-202ENST00000549612 MROH2BQ7Z745 1585 aa37.36■■■■□ 3.57
ATF1-202ENST00000549612 BAZ1BQ9UIG0 1483 aaKnown RBP37.34■■■■□ 3.57
ATF1-202ENST00000549612 ERCC6Q03468 1493 aa37.07■■■■□ 3.52
ATF1-202ENST00000549612 NESP48681 1621 aa37.01■■■■□ 3.52
ATF1-202ENST00000549612 CUX2O14529 1486 aa36.92■■■■□ 3.5
ATF1-202ENST00000549612 WIZO95785 1651 aa36.9■■■■□ 3.5
ATF1-202ENST00000549612 LAMC3Q9Y6N6 1575 aa36.85■■■■□ 3.49
ATF1-202ENST00000549612 RSF1Q96T23 1441 aaPredicted RBP36.75■■■■□ 3.47
ATF1-202ENST00000549612 CADPSQ9ULU8 1353 aa36.64■■■■□ 3.46
ATF1-202ENST00000549612 PDS5BQ9NTI5 1447 aa36.63■■■■□ 3.45
ATF1-202ENST00000549612 THOC2Q8NI27 1593 aaKnown RBP36.59■■■■□ 3.45
ATF1-202ENST00000549612 KIF21AQ7Z4S6 1674 aa36.52■■■■□ 3.44
ATF1-202ENST00000549612 TOP2AP11388 1531 aaKnown RBP36.51■■■■□ 3.44
ATF1-202ENST00000549612 DNAJC5Q9H3Z4 198 aa36.44■■■■□ 3.42
ATF1-202ENST00000549612 CFTRP13569 1480 aa36.31■■■■□ 3.4
ATF1-202ENST00000549612 MRC2Q9UBG0 1479 aa36.29■■■■□ 3.4
ATF1-202ENST00000549612 CEP164Q9UPV0 1460 aa36.21■■■■□ 3.39
ATF1-202ENST00000549612 WDR62O43379 1518 aa36.2■■■■□ 3.39
ATF1-202ENST00000549612 FANCD2Q9BXW9 1451 aa36.2■■■■□ 3.39
ATF1-202ENST00000549612 CCDC88BA6NC98 1476 aa36.08■■■■□ 3.37
ATF1-202ENST00000549612 PRDM2Q13029 1718 aa35.92■■■■□ 3.34
ATF1-202ENST00000549612 URB2Q14146 1524 aaKnown RBP35.88■■■■□ 3.33
ATF1-202ENST00000549612 TOPBP1Q92547 1522 aa35.57■■■■□ 3.28
ATF1-202ENST00000549612 ABCC8Q09428 1581 aa35.53■■■■□ 3.28
ATF1-202ENST00000549612 IFT140Q96RY7 1462 aa35.48■■■■□ 3.27
ATF1-202ENST00000549612 DNMBPQ6XZF7 1577 aa35.47■■■■□ 3.27
ATF1-202ENST00000549612 ZNF608Q9ULD9 1512 aaPredicted RBP35.37■■■■□ 3.25
ATF1-202ENST00000549612 SUPT5HO00267 1087 aaKnown RBP35.3■■■■□ 3.24
ATF1-202ENST00000549612 OSCARQ8IYS5 282 aa35.25■■■■□ 3.23
ATF1-202ENST00000549612 POLA1P09884 1462 aaPredicted RBP35.23■■■■□ 3.23
ATF1-202ENST00000549612 TARBP1Q13395 1621 aaKnown RBP35.22■■■■□ 3.23
ATF1-202ENST00000549612 EIF4G3O43432 1585 aaKnown RBP35.2■■■■□ 3.23
ATF1-202ENST00000549612 CUX1P39880 1505 aa35.09■■■■□ 3.21
ATF1-202ENST00000549612 AQRO60306 1485 aaKnown RBP eCLIP35.09■■■■□ 3.21
ATF1-202ENST00000549612 RAD54L2Q9Y4B4 1467 aa35.06■■■■□ 3.2
ATF1-202ENST00000549612 SOGA1O94964 1423 aa35.06■■■■□ 3.2
ATF1-202ENST00000549612 FGD5Q6ZNL6 1462 aa35.05■■■■□ 3.2
ATF1-202ENST00000549612 WDR97A6NE52 1622 aa34.93■■■■□ 3.18
ATF1-202ENST00000549612 TDRD9Q8NDG6 1382 aaKnown RBP34.93■■■■□ 3.18
ATF1-202ENST00000549612 TRIM41Q8WV44 630 aa34.92■■■■□ 3.18
ATF1-202ENST00000549612 CHD1O14646 1710 aa34.82■■■■□ 3.16
ATF1-202ENST00000549612 SNAPC4Q5SXM2 1469 aa34.76■■■■□ 3.15
ATF1-202ENST00000549612 RIMBP3CA6NJZ7 1639 aa34.75■■■■□ 3.15
ATF1-202ENST00000549612 RIMBP3BA6NNM3 1639 aa34.75■■■■□ 3.15
ATF1-202ENST00000549612 RIMBP3Q9UFD9 1639 aa34.75■■■■□ 3.15
ATF1-202ENST00000549612 GRIN2BQ13224 1484 aa34.73■■■■□ 3.15
ATF1-202ENST00000549612 FBLN2P98095 1184 aa34.73■■■■□ 3.15
ATF1-202ENST00000549612 MAGI1Q96QZ7 1491 aaPredicted RBP34.71■■■■□ 3.15
ATF1-202ENST00000549612 ARHGEF11O15085 1522 aa34.71■■■■□ 3.15
ATF1-202ENST00000549612 ABCA10Q8WWZ4 1543 aa34.71■■■■□ 3.15
ATF1-202ENST00000549612 GAPVD1Q14C86 1478 aa34.65■■■■□ 3.14
ATF1-202ENST00000549612 WRNQ14191 1432 aaPredicted RBP eCLIP34.64■■■■□ 3.14
ATF1-202ENST00000549612 TOP2BQ02880 1626 aa34.63■■■■□ 3.13
ATF1-202ENST00000549612 BIVM-ERCC5R4GMW8 1640 aa34.63■■■■□ 3.13
ATF1-202ENST00000549612 ABCA5Q8WWZ7 1642 aa34.61■■■■□ 3.13
ATF1-202ENST00000549612 SYNJ2O15056 1496 aa34.58■■■■□ 3.13
ATF1-202ENST00000549612 SYNJ1O43426 1573 aa34.58■■■■□ 3.13
ATF1-202ENST00000549612 PBRM1Q86U86 1689 aa34.57■■■■□ 3.13
ATF1-202ENST00000549612 CHMP7Q8WUX9 453 aaPredicted RBP34.57■■■■□ 3.12
ATF1-202ENST00000549612 CLASP1Q7Z460 1538 aa34.5■■■■□ 3.11
ATF1-202ENST00000549612 ARAP1Q96P48 1450 aa34.39■■■■□ 3.1
ATF1-202ENST00000549612 CYB5RLQ6IPT4 315 aa34.37■■■■□ 3.09
ATF1-202ENST00000549612 ADAMTS12P58397 1594 aa34.32■■■■□ 3.09
ATF1-202ENST00000549612 GRIN2AQ12879 1464 aa34.28■■■■□ 3.08
ATF1-202ENST00000549612 ERICH3Q5RHP9 1530 aa34.28■■■■□ 3.08
ATF1-202ENST00000549612 FHAD1B1AJZ9 1412 aa34.24■■■■□ 3.07
ATF1-202ENST00000549612 NUP160Q12769 1436 aa34.18■■■■□ 3.06
ATF1-202ENST00000549612 CEP170Q5SW79 1584 aa34.13■■■■□ 3.05
ATF1-202ENST00000549612 SHROOM2Q13796 1616 aa33.97■■■■□ 3.03
ATF1-202ENST00000549612 KIF27Q86VH2 1401 aa33.96■■■■□ 3.03
ATF1-202ENST00000549612 ERCC6L2Q5T890 1561 aa33.95■■■■□ 3.03
ATF1-202ENST00000549612 IGF1RP08069 1367 aa33.91■■■■□ 3.02
ATF1-202ENST00000549612 TRHP20396 242 aaPredicted RBP33.84■■■■□ 3.01
ATF1-202ENST00000549612 CUL7Q14999 1698 aa33.83■■■■□ 3.01
ATF1-202ENST00000549612 RUSC2Q8N2Y8 1516 aa33.83■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 144 ms