RNA–Protein interactions for RNA: ENST00000548821.1

GCN1-205, Transcript of GCN1, eIF2 alpha kinase activator homolog, humanhuman

TSL 3

Gene GCN1, Length 504 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GCN1-205ENST00000548821 NISCHQ9Y2I1 1504 aa23.6■■□□□ 1.37
GCN1-205ENST00000548821 CCDC180Q9P1Z9 1646 aa21.12■□□□□ 0.97
GCN1-205ENST00000548821 ABCC9O60706 1549 aa21.03■□□□□ 0.96
GCN1-205ENST00000548821 RB1CC1Q8TDY2 1594 aa20.15■□□□□ 0.82
GCN1-205ENST00000548821 DCAF8L2P0C7V8 631 aa20.05■□□□□ 0.8
GCN1-205ENST00000548821 NACADO15069 1562 aa20.04■□□□□ 0.8
GCN1-205ENST00000548821 MYO15BQ96JP2 1530 aa19.82■□□□□ 0.76
GCN1-205ENST00000548821 PABPN1Q86U42 306 aaKnown RBP eCLIP19.63■□□□□ 0.73
GCN1-205ENST00000548821 DNAJC5BQ9UF47 199 aa19.59■□□□□ 0.73
GCN1-205ENST00000548821 DCAF1Q9Y4B6 1507 aa19.56■□□□□ 0.72
GCN1-205ENST00000548821 ZCCHC6Q5VYS8 1495 aaKnown RBP19.54■□□□□ 0.72
GCN1-205ENST00000548821 UNC13AQ9UPW8 1703 aa19.4■□□□□ 0.7
GCN1-205ENST00000548821 SHROOM4Q9ULL8 1493 aa19.39■□□□□ 0.69
GCN1-205ENST00000548821 BICRAQ9NZM4 1560 aa19.36■□□□□ 0.69
GCN1-205ENST00000548821 SCRIBQ14160 1630 aa19.18■□□□□ 0.66
GCN1-205ENST00000548821 CECR2Q9BXF3 1484 aa19■□□□□ 0.63
GCN1-205ENST00000548821 EIF4G1Q04637 1599 aaKnown RBP18.98■□□□□ 0.63
GCN1-205ENST00000548821 CC2D2AQ9P2K1 1620 aa18.97■□□□□ 0.63
GCN1-205ENST00000548821 NCAPD3P42695 1498 aa18.5■□□□□ 0.55
GCN1-205ENST00000548821 SMARCA2P51531 1590 aa18.42■□□□□ 0.54
GCN1-205ENST00000548821 ATAD2BQ9ULI0 1458 aa18.39■□□□□ 0.54
GCN1-205ENST00000548821 BAZ1AQ9NRL2 1556 aaPredicted RBP18.37■□□□□ 0.53
GCN1-205ENST00000548821 SMARCA4P51532 1647 aa18.34■□□□□ 0.53
GCN1-205ENST00000548821 HMGXB3Q12766 1538 aa18.32■□□□□ 0.52
GCN1-205ENST00000548821 ERCC6Q03468 1493 aa18.28■□□□□ 0.52
GCN1-205ENST00000548821 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
GCN1-205ENST00000548821 CUX2O14529 1486 aa18.21■□□□□ 0.51
GCN1-205ENST00000548821 PEG3Q9GZU2 1588 aa18.2■□□□□ 0.5
GCN1-205ENST00000548821 DNAJC5Q9H3Z4 198 aa18.13■□□□□ 0.49
GCN1-205ENST00000548821 MROH2BQ7Z745 1585 aa18.1■□□□□ 0.49
GCN1-205ENST00000548821 PDS5BQ9NTI5 1447 aa18.06■□□□□ 0.48
GCN1-205ENST00000548821 LAMC3Q9Y6N6 1575 aa18.05■□□□□ 0.48
GCN1-205ENST00000548821 NESP48681 1621 aa18.01■□□□□ 0.47
GCN1-205ENST00000548821 CADPSQ9ULU8 1353 aa17.97■□□□□ 0.47
GCN1-205ENST00000548821 WIZO95785 1651 aa17.85■□□□□ 0.45
GCN1-205ENST00000548821 RSF1Q96T23 1441 aaPredicted RBP17.83■□□□□ 0.45
GCN1-205ENST00000548821 THOC2Q8NI27 1593 aaKnown RBP17.8■□□□□ 0.44
GCN1-205ENST00000548821 MRC2Q9UBG0 1479 aa17.78■□□□□ 0.44
GCN1-205ENST00000548821 CEP164Q9UPV0 1460 aa17.75■□□□□ 0.43
GCN1-205ENST00000548821 KIF21AQ7Z4S6 1674 aa17.74■□□□□ 0.43
GCN1-205ENST00000548821 TOP2AP11388 1531 aaKnown RBP17.73■□□□□ 0.43
GCN1-205ENST00000548821 CFTRP13569 1480 aa17.73■□□□□ 0.43
GCN1-205ENST00000548821 FANCD2Q9BXW9 1451 aa17.7■□□□□ 0.42
GCN1-205ENST00000548821 WDR62O43379 1518 aa17.67■□□□□ 0.42
GCN1-205ENST00000548821 CCDC88BA6NC98 1476 aa17.54■□□□□ 0.4
GCN1-205ENST00000548821 OSCARQ8IYS5 282 aa17.51■□□□□ 0.39
GCN1-205ENST00000548821 ABCC8Q09428 1581 aa17.5■□□□□ 0.39
GCN1-205ENST00000548821 URB2Q14146 1524 aaKnown RBP17.46■□□□□ 0.39
GCN1-205ENST00000548821 IFT140Q96RY7 1462 aa17.42■□□□□ 0.38
GCN1-205ENST00000548821 PRDM2Q13029 1718 aa17.41■□□□□ 0.38
GCN1-205ENST00000548821 TRIM41Q8WV44 630 aa17.34■□□□□ 0.37
GCN1-205ENST00000548821 TOPBP1Q92547 1522 aa17.34■□□□□ 0.37
GCN1-205ENST00000548821 DNMBPQ6XZF7 1577 aa17.29■□□□□ 0.36
GCN1-205ENST00000548821 ZNF608Q9ULD9 1512 aaPredicted RBP17.21■□□□□ 0.35
GCN1-205ENST00000548821 SUPT5HO00267 1087 aaKnown RBP17.2■□□□□ 0.34
GCN1-205ENST00000548821 SOGA1O94964 1423 aa17.2■□□□□ 0.34
GCN1-205ENST00000548821 FBLN2P98095 1184 aa17.17■□□□□ 0.34
GCN1-205ENST00000548821 POLA1P09884 1462 aaPredicted RBP17.16■□□□□ 0.34
GCN1-205ENST00000548821 AQRO60306 1485 aaKnown RBP eCLIP17.14■□□□□ 0.337e-7■■■■□ 24.5
GCN1-205ENST00000548821 EIF4G3O43432 1585 aaKnown RBP17.12■□□□□ 0.33
GCN1-205ENST00000548821 WDR97A6NE52 1622 aa17.11■□□□□ 0.33
GCN1-205ENST00000548821 TARBP1Q13395 1621 aaKnown RBP17.11■□□□□ 0.33
GCN1-205ENST00000548821 CHMP7Q8WUX9 453 aaPredicted RBP17.1■□□□□ 0.33
GCN1-205ENST00000548821 TDRD9Q8NDG6 1382 aaKnown RBP17.09■□□□□ 0.33
GCN1-205ENST00000548821 FGD5Q6ZNL6 1462 aa17.06■□□□□ 0.32
GCN1-205ENST00000548821 RAD54L2Q9Y4B4 1467 aa17.06■□□□□ 0.32
GCN1-205ENST00000548821 GRIN2BQ13224 1484 aa17.02■□□□□ 0.32
GCN1-205ENST00000548821 ARHGEF11O15085 1522 aa17.01■□□□□ 0.31
GCN1-205ENST00000548821 MAGI1Q96QZ7 1491 aaPredicted RBP17.01■□□□□ 0.31
GCN1-205ENST00000548821 CYB5RLQ6IPT4 315 aa17.01■□□□□ 0.31
GCN1-205ENST00000548821 CUX1P39880 1505 aa17.01■□□□□ 0.31
GCN1-205ENST00000548821 RIMBP3CA6NJZ7 1639 aa17■□□□□ 0.31
GCN1-205ENST00000548821 RIMBP3BA6NNM3 1639 aa17■□□□□ 0.31
GCN1-205ENST00000548821 RIMBP3Q9UFD9 1639 aa17■□□□□ 0.31
GCN1-205ENST00000548821 WRNQ14191 1432 aaPredicted RBP eCLIP16.97■□□□□ 0.31
GCN1-205ENST00000548821 SNAPC4Q5SXM2 1469 aa16.97■□□□□ 0.31
GCN1-205ENST00000548821 GAPVD1Q14C86 1478 aa16.95■□□□□ 0.3
GCN1-205ENST00000548821 SYNJ2O15056 1496 aa16.94■□□□□ 0.3
GCN1-205ENST00000548821 SYNJ1O43426 1573 aa16.94■□□□□ 0.3
GCN1-205ENST00000548821 CHD1O14646 1710 aa16.93■□□□□ 0.3
GCN1-205ENST00000548821 ABCA10Q8WWZ4 1543 aa16.92■□□□□ 0.3
GCN1-205ENST00000548821 TRHP20396 242 aaPredicted RBP16.87■□□□□ 0.29
GCN1-205ENST00000548821 TOP2BQ02880 1626 aa16.81■□□□□ 0.28
GCN1-205ENST00000548821 ARAP1Q96P48 1450 aa16.81■□□□□ 0.28
GCN1-205ENST00000548821 CLASP1Q7Z460 1538 aa16.8■□□□□ 0.28
GCN1-205ENST00000548821 PBRM1Q86U86 1689 aa16.78■□□□□ 0.28
GCN1-205ENST00000548821 ABCA5Q8WWZ7 1642 aa16.78■□□□□ 0.28
GCN1-205ENST00000548821 FHAD1B1AJZ9 1412 aa16.78■□□□□ 0.28
GCN1-205ENST00000548821 AEBP2Q6ZN18 517 aaPredicted RBP16.77■□□□□ 0.28
GCN1-205ENST00000548821 BIVM-ERCC5R4GMW8 1640 aa16.77■□□□□ 0.27
GCN1-205ENST00000548821 GRIN2AQ12879 1464 aa16.74■□□□□ 0.27
GCN1-205ENST00000548821 ERICH3Q5RHP9 1530 aa16.74■□□□□ 0.27
GCN1-205ENST00000548821 NUP160Q12769 1436 aa16.68■□□□□ 0.26
GCN1-205ENST00000548821 ADAMTS12P58397 1594 aa16.67■□□□□ 0.26
GCN1-205ENST00000548821 JPH4Q96JJ6 628 aa16.64■□□□□ 0.25
GCN1-205ENST00000548821 KIF27Q86VH2 1401 aa16.63■□□□□ 0.25
GCN1-205ENST00000548821 NPM1P06748 294 aaKnown RBP eCLIP16.61■□□□□ 0.25
GCN1-205ENST00000548821 CEP170Q5SW79 1584 aa16.58■□□□□ 0.24
GCN1-205ENST00000548821 PRG4Q92954 1404 aaPredicted RBP16.56■□□□□ 0.24
GCN1-205ENST00000548821 CHIC1Q5VXU3 224 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms