RNA–Protein interactions for RNA: ENST00000547877.5

LETMD1-212, Transcript of LETM1 domain containing 1, humanhuman

TSL 5

Gene LETMD1, Length 2,020 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LETMD1-212ENST00000547877 NISCHQ9Y2I1 1504 aa34.84■■■■□ 3.17
LETMD1-212ENST00000547877 CCDC180Q9P1Z9 1646 aa30.65■■■□□ 2.5
LETMD1-212ENST00000547877 ABCC9O60706 1549 aa29.44■■■□□ 2.3
LETMD1-212ENST00000547877 ZCCHC6Q5VYS8 1495 aaKnown RBP29.16■■■□□ 2.26
LETMD1-212ENST00000547877 DCAF8L2P0C7V8 631 aa28.92■■■□□ 2.22
LETMD1-212ENST00000547877 DCAF1Q9Y4B6 1507 aa28.82■■■□□ 2.2
LETMD1-212ENST00000547877 MYO15BQ96JP2 1530 aa28.69■■■□□ 2.18
LETMD1-212ENST00000547877 NACADO15069 1562 aa28.67■■■□□ 2.18
LETMD1-212ENST00000547877 RB1CC1Q8TDY2 1594 aa28.55■■■□□ 2.16
LETMD1-212ENST00000547877 SCRIBQ14160 1630 aa28.09■■■□□ 2.09
LETMD1-212ENST00000547877 SHROOM4Q9ULL8 1493 aa28■■■□□ 2.07
LETMD1-212ENST00000547877 UNC13AQ9UPW8 1703 aa27.95■■■□□ 2.06
LETMD1-212ENST00000547877 BICRAQ9NZM4 1560 aa27.7■■■□□ 2.02
LETMD1-212ENST00000547877 PABPN1Q86U42 306 aaKnown RBP eCLIP27.65■■■□□ 2.02
LETMD1-212ENST00000547877 CECR2Q9BXF3 1484 aa27.1■■□□□ 1.93
LETMD1-212ENST00000547877 BAZ1AQ9NRL2 1556 aaPredicted RBP26.96■■□□□ 1.91
LETMD1-212ENST00000547877 EIF4G1Q04637 1599 aaKnown RBP26.91■■□□□ 1.9
LETMD1-212ENST00000547877 SMARCA4P51532 1647 aa26.9■■□□□ 1.9
LETMD1-212ENST00000547877 MROH2BQ7Z745 1585 aa26.89■■□□□ 1.89
LETMD1-212ENST00000547877 RSF1Q96T23 1441 aaPredicted RBP26.81■■□□□ 1.88
LETMD1-212ENST00000547877 SUPT5HO00267 1087 aaKnown RBP26.67■■□□□ 1.86
LETMD1-212ENST00000547877 CC2D2AQ9P2K1 1620 aa26.65■■□□□ 1.86
LETMD1-212ENST00000547877 WIZO95785 1651 aa26.64■■□□□ 1.85
LETMD1-212ENST00000547877 PEG3Q9GZU2 1588 aa26.61■■□□□ 1.85
LETMD1-212ENST00000547877 ATAD2BQ9ULI0 1458 aa26.59■■□□□ 1.85
LETMD1-212ENST00000547877 SMARCA2P51531 1590 aa26.58■■□□□ 1.84
LETMD1-212ENST00000547877 NCAPD3P42695 1498 aa26.46■■□□□ 1.83
LETMD1-212ENST00000547877 DNAJC5BQ9UF47 199 aa26.46■■□□□ 1.83
LETMD1-212ENST00000547877 BAZ1BQ9UIG0 1483 aaKnown RBP26.41■■□□□ 1.82
LETMD1-212ENST00000547877 HMGXB3Q12766 1538 aa26.39■■□□□ 1.81
LETMD1-212ENST00000547877 TOP2AP11388 1531 aaKnown RBP26.36■■□□□ 1.81
LETMD1-212ENST00000547877 CCDC88BA6NC98 1476 aa26.07■■□□□ 1.76
LETMD1-212ENST00000547877 CADPSQ9ULU8 1353 aa25.75■■□□□ 1.71
LETMD1-212ENST00000547877 CFTRP13569 1480 aa25.73■■□□□ 1.71
LETMD1-212ENST00000547877 NESP48681 1621 aa25.68■■□□□ 1.7
LETMD1-212ENST00000547877 LAMC3Q9Y6N6 1575 aa25.66■■□□□ 1.7
LETMD1-212ENST00000547877 PRDM2Q13029 1718 aa25.56■■□□□ 1.68
LETMD1-212ENST00000547877 PDS5BQ9NTI5 1447 aa25.47■■□□□ 1.67
LETMD1-212ENST00000547877 FANCD2Q9BXW9 1451 aa25.45■■□□□ 1.67
LETMD1-212ENST00000547877 KIF21AQ7Z4S6 1674 aa25.38■■□□□ 1.65
LETMD1-212ENST00000547877 CEP164Q9UPV0 1460 aa25.35■■□□□ 1.65
LETMD1-212ENST00000547877 ABCC8Q09428 1581 aa25.35■■□□□ 1.65
LETMD1-212ENST00000547877 ERCC6Q03468 1493 aa25.31■■□□□ 1.64
LETMD1-212ENST00000547877 WRNQ14191 1432 aaPredicted RBP eCLIP25.26■■□□□ 1.63
LETMD1-212ENST00000547877 CHIC1Q5VXU3 224 aa25.25■■□□□ 1.63
LETMD1-212ENST00000547877 CUX1P39880 1505 aa25.18■■□□□ 1.62
LETMD1-212ENST00000547877 MRC2Q9UBG0 1479 aa25.17■■□□□ 1.62
LETMD1-212ENST00000547877 SYNJ1O43426 1573 aa25.17■■□□□ 1.62
LETMD1-212ENST00000547877 URB2Q14146 1524 aaKnown RBP25.17■■□□□ 1.62
LETMD1-212ENST00000547877 TRIM41Q8WV44 630 aa25.13■■□□□ 1.61
LETMD1-212ENST00000547877 DNMBPQ6XZF7 1577 aa25.13■■□□□ 1.61
LETMD1-212ENST00000547877 TOP2BQ02880 1626 aa25.13■■□□□ 1.61
LETMD1-212ENST00000547877 TOPBP1Q92547 1522 aa25.12■■□□□ 1.61
LETMD1-212ENST00000547877 THOC2Q8NI27 1593 aaKnown RBP25.11■■□□□ 1.61
LETMD1-212ENST00000547877 BIVM-ERCC5R4GMW8 1640 aa25.1■■□□□ 1.61
LETMD1-212ENST00000547877 WDR62O43379 1518 aa25.07■■□□□ 1.6
LETMD1-212ENST00000547877 FGD5Q6ZNL6 1462 aa24.99■■□□□ 1.59
LETMD1-212ENST00000547877 POLA1P09884 1462 aaPredicted RBP24.96■■□□□ 1.59
LETMD1-212ENST00000547877 CUX2O14529 1486 aa24.86■■□□□ 1.57
LETMD1-212ENST00000547877 SOGA1O94964 1423 aa24.86■■□□□ 1.57
LETMD1-212ENST00000547877 RAD54L2Q9Y4B4 1467 aa24.86■■□□□ 1.57
LETMD1-212ENST00000547877 TARBP1Q13395 1621 aaKnown RBP24.79■■□□□ 1.56
LETMD1-212ENST00000547877 IFT140Q96RY7 1462 aa24.78■■□□□ 1.56
LETMD1-212ENST00000547877 ABCA10Q8WWZ4 1543 aa24.77■■□□□ 1.56
LETMD1-212ENST00000547877 WDR97A6NE52 1622 aa24.74■■□□□ 1.55
LETMD1-212ENST00000547877 RUSC2Q8N2Y8 1516 aa24.68■■□□□ 1.54
LETMD1-212ENST00000547877 TDRD9Q8NDG6 1382 aaKnown RBP24.67■■□□□ 1.54
LETMD1-212ENST00000547877 KIF27Q86VH2 1401 aa24.67■■□□□ 1.54
LETMD1-212ENST00000547877 ZNF608Q9ULD9 1512 aaPredicted RBP24.66■■□□□ 1.54
LETMD1-212ENST00000547877 FAM9AQ8IZU1 332 aaPredicted RBP24.63■■□□□ 1.53
LETMD1-212ENST00000547877 ABCA5Q8WWZ7 1642 aa24.61■■□□□ 1.53
LETMD1-212ENST00000547877 AQRO60306 1485 aaKnown RBP eCLIP24.61■■□□□ 1.531e-6■■□□□ 12.7
LETMD1-212ENST00000547877 EEA1Q15075 1411 aa24.6■■□□□ 1.53
LETMD1-212ENST00000547877 GAPVD1Q14C86 1478 aa24.59■■□□□ 1.53
LETMD1-212ENST00000547877 EIF4G3O43432 1585 aaKnown RBP24.57■■□□□ 1.52
LETMD1-212ENST00000547877 CSRNP3Q8WYN3 585 aa24.51■■□□□ 1.51
LETMD1-212ENST00000547877 IGF1RP08069 1367 aa24.5■■□□□ 1.51
LETMD1-212ENST00000547877 PBRM1Q86U86 1689 aa24.48■■□□□ 1.51
LETMD1-212ENST00000547877 GRIN2BQ13224 1484 aa24.48■■□□□ 1.51
LETMD1-212ENST00000547877 ERICH3Q5RHP9 1530 aa24.47■■□□□ 1.51
LETMD1-212ENST00000547877 SNAPC4Q5SXM2 1469 aa24.38■■□□□ 1.49
LETMD1-212ENST00000547877 CUL7Q14999 1698 aa24.37■■□□□ 1.49
LETMD1-212ENST00000547877 CARMIL1Q5VZK9 1371 aa24.37■■□□□ 1.49
LETMD1-212ENST00000547877 PRXQ9BXM0 1461 aa24.37■■□□□ 1.49
LETMD1-212ENST00000547877 MAGI1Q96QZ7 1491 aaPredicted RBP24.34■■□□□ 1.49
LETMD1-212ENST00000547877 ADAMTS12P58397 1594 aa24.33■■□□□ 1.49
LETMD1-212ENST00000547877 KIF21BO75037 1637 aa24.32■■□□□ 1.48
LETMD1-212ENST00000547877 FHAD1B1AJZ9 1412 aa24.31■■□□□ 1.48
LETMD1-212ENST00000547877 EHMT2Q96KQ7 1210 aa24.3■■□□□ 1.48
LETMD1-212ENST00000547877 RAPGEF2Q9Y4G8 1499 aa24.28■■□□□ 1.48
LETMD1-212ENST00000547877 SYNJ2O15056 1496 aa24.25■■□□□ 1.47
LETMD1-212ENST00000547877 LOC105371045A0A1W2PR82 267 aa24.25■■□□□ 1.47
LETMD1-212ENST00000547877 GOLGA3Q08378 1498 aa24.24■■□□□ 1.47
LETMD1-212ENST00000547877 CHMP7Q8WUX9 453 aaPredicted RBP24.21■■□□□ 1.47
LETMD1-212ENST00000547877 FBLN2P98095 1184 aa24.2■■□□□ 1.47
LETMD1-212ENST00000547877 GRIN2AQ12879 1464 aa24.18■■□□□ 1.46
LETMD1-212ENST00000547877 UBTFP17480 764 aaKnown RBP24.15■■□□□ 1.46
LETMD1-212ENST00000547877 CHD1O14646 1710 aa24.13■■□□□ 1.45
LETMD1-212ENST00000547877 TNIKQ9UKE5 1360 aa24.05■■□□□ 1.44
LETMD1-212ENST00000547877 CEP170Q5SW79 1584 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms