RNA–Protein interactions for RNA: ENST00000547533.1

AC055716.3-201, humanhuman

TSL 3 BASIC

Gene AC055716.3, Length 761 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC055716.3-201ENST00000547533 NISCHQ9Y2I1 1504 aa22.84■■□□□ 1.25
AC055716.3-201ENST00000547533 ABCC9O60706 1549 aa20.68■□□□□ 0.9
AC055716.3-201ENST00000547533 CCDC180Q9P1Z9 1646 aa20.66■□□□□ 0.9
AC055716.3-201ENST00000547533 RB1CC1Q8TDY2 1594 aa19.74■□□□□ 0.75
AC055716.3-201ENST00000547533 NACADO15069 1562 aa19.54■□□□□ 0.72
AC055716.3-201ENST00000547533 DCAF8L2P0C7V8 631 aa19.4■□□□□ 0.7
AC055716.3-201ENST00000547533 DNAJC5BQ9UF47 199 aa19.37■□□□□ 0.69
AC055716.3-201ENST00000547533 UNC13AQ9UPW8 1703 aa19.24■□□□□ 0.67
AC055716.3-201ENST00000547533 MYO15BQ96JP2 1530 aa19.2■□□□□ 0.66
AC055716.3-201ENST00000547533 PABPN1Q86U42 306 aaKnown RBP eCLIP19.19■□□□□ 0.66
AC055716.3-201ENST00000547533 BICRAQ9NZM4 1560 aa19.02■□□□□ 0.63
AC055716.3-201ENST00000547533 ZCCHC6Q5VYS8 1495 aaKnown RBP18.9■□□□□ 0.62
AC055716.3-201ENST00000547533 SHROOM4Q9ULL8 1493 aa18.9■□□□□ 0.62
AC055716.3-201ENST00000547533 DCAF1Q9Y4B6 1507 aa18.9■□□□□ 0.62
AC055716.3-201ENST00000547533 SCRIBQ14160 1630 aa18.75■□□□□ 0.59
AC055716.3-201ENST00000547533 CC2D2AQ9P2K1 1620 aa18.71■□□□□ 0.58
AC055716.3-201ENST00000547533 CECR2Q9BXF3 1484 aa18.67■□□□□ 0.58
AC055716.3-201ENST00000547533 EIF4G1Q04637 1599 aaKnown RBP18.63■□□□□ 0.57
AC055716.3-201ENST00000547533 DNAJC5Q9H3Z4 198 aa18.02■□□□□ 0.48
AC055716.3-201ENST00000547533 NCAPD3P42695 1498 aa17.97■□□□□ 0.47
AC055716.3-201ENST00000547533 ERCC6Q03468 1493 aa17.97■□□□□ 0.47
AC055716.3-201ENST00000547533 CUX2O14529 1486 aa17.95■□□□□ 0.46
AC055716.3-201ENST00000547533 SMARCA2P51531 1590 aa17.92■□□□□ 0.46
AC055716.3-201ENST00000547533 ATAD2BQ9ULI0 1458 aa17.88■□□□□ 0.45
AC055716.3-201ENST00000547533 SMARCA4P51532 1647 aa17.88■□□□□ 0.45
AC055716.3-201ENST00000547533 HMGXB3Q12766 1538 aa17.88■□□□□ 0.45
AC055716.3-201ENST00000547533 BAZ1AQ9NRL2 1556 aaPredicted RBP17.81■□□□□ 0.44
AC055716.3-201ENST00000547533 BAZ1BQ9UIG0 1483 aaKnown RBP17.78■□□□□ 0.44
AC055716.3-201ENST00000547533 PEG3Q9GZU2 1588 aa17.7■□□□□ 0.42
AC055716.3-201ENST00000547533 NESP48681 1621 aa17.69■□□□□ 0.42
AC055716.3-201ENST00000547533 LAMC3Q9Y6N6 1575 aa17.66■□□□□ 0.42
AC055716.3-201ENST00000547533 THOC2Q8NI27 1593 aaKnown RBP17.59■□□□□ 0.41
AC055716.3-201ENST00000547533 PDS5BQ9NTI5 1447 aa17.57■□□□□ 0.4
AC055716.3-201ENST00000547533 KIF21AQ7Z4S6 1674 aa17.55■□□□□ 0.4
AC055716.3-201ENST00000547533 MROH2BQ7Z745 1585 aa17.55■□□□□ 0.4
AC055716.3-201ENST00000547533 CADPSQ9ULU8 1353 aa17.43■□□□□ 0.38
AC055716.3-201ENST00000547533 MRC2Q9UBG0 1479 aa17.39■□□□□ 0.37
AC055716.3-201ENST00000547533 WIZO95785 1651 aa17.39■□□□□ 0.37
AC055716.3-201ENST00000547533 WDR62O43379 1518 aa17.33■□□□□ 0.37
AC055716.3-201ENST00000547533 CEP164Q9UPV0 1460 aa17.31■□□□□ 0.36
AC055716.3-201ENST00000547533 FANCD2Q9BXW9 1451 aa17.25■□□□□ 0.35
AC055716.3-201ENST00000547533 TRIM41Q8WV44 630 aa17.22■□□□□ 0.35
AC055716.3-201ENST00000547533 CFTRP13569 1480 aa17.19■□□□□ 0.34
AC055716.3-201ENST00000547533 TOP2AP11388 1531 aaKnown RBP17.18■□□□□ 0.34
AC055716.3-201ENST00000547533 PRDM2Q13029 1718 aa17.16■□□□□ 0.34
AC055716.3-201ENST00000547533 RSF1Q96T23 1441 aaPredicted RBP17.14■□□□□ 0.33
AC055716.3-201ENST00000547533 OSCARQ8IYS5 282 aa17.11■□□□□ 0.33
AC055716.3-201ENST00000547533 URB2Q14146 1524 aaKnown RBP17.06■□□□□ 0.32
AC055716.3-201ENST00000547533 IFT140Q96RY7 1462 aa16.97■□□□□ 0.31
AC055716.3-201ENST00000547533 ABCC8Q09428 1581 aa16.95■□□□□ 0.3
AC055716.3-201ENST00000547533 CCDC88BA6NC98 1476 aa16.94■□□□□ 0.3
AC055716.3-201ENST00000547533 TOPBP1Q92547 1522 aa16.89■□□□□ 0.29
AC055716.3-201ENST00000547533 RIMBP3CA6NJZ7 1639 aa16.87■□□□□ 0.29
AC055716.3-201ENST00000547533 RIMBP3BA6NNM3 1639 aa16.87■□□□□ 0.29
AC055716.3-201ENST00000547533 RIMBP3Q9UFD9 1639 aa16.87■□□□□ 0.29
AC055716.3-201ENST00000547533 DNMBPQ6XZF7 1577 aa16.86■□□□□ 0.29
AC055716.3-201ENST00000547533 ZNF608Q9ULD9 1512 aaPredicted RBP16.86■□□□□ 0.29
AC055716.3-201ENST00000547533 EIF4G3O43432 1585 aaKnown RBP16.84■□□□□ 0.29
AC055716.3-201ENST00000547533 ARHGEF11O15085 1522 aa16.79■□□□□ 0.28
AC055716.3-201ENST00000547533 CHD1O14646 1710 aa16.78■□□□□ 0.28
AC055716.3-201ENST00000547533 TARBP1Q13395 1621 aaKnown RBP16.74■□□□□ 0.27
AC055716.3-201ENST00000547533 FBLN2P98095 1184 aa16.71■□□□□ 0.27
AC055716.3-201ENST00000547533 AQRO60306 1485 aaKnown RBP eCLIP16.71■□□□□ 0.27
AC055716.3-201ENST00000547533 POLA1P09884 1462 aaPredicted RBP16.69■□□□□ 0.26
AC055716.3-201ENST00000547533 WDR97A6NE52 1622 aa16.68■□□□□ 0.26
AC055716.3-201ENST00000547533 CYB5RLQ6IPT4 315 aa16.68■□□□□ 0.26
AC055716.3-201ENST00000547533 SOGA1O94964 1423 aa16.65■□□□□ 0.26
AC055716.3-201ENST00000547533 TRHP20396 242 aaPredicted RBP16.61■□□□□ 0.25
AC055716.3-201ENST00000547533 RAD54L2Q9Y4B4 1467 aa16.61■□□□□ 0.25
AC055716.3-201ENST00000547533 TDRD9Q8NDG6 1382 aaKnown RBP16.59■□□□□ 0.25
AC055716.3-201ENST00000547533 FGD5Q6ZNL6 1462 aa16.59■□□□□ 0.25
AC055716.3-201ENST00000547533 SYNJ1O43426 1573 aa16.59■□□□□ 0.25
AC055716.3-201ENST00000547533 CHMP7Q8WUX9 453 aaPredicted RBP16.58■□□□□ 0.24
AC055716.3-201ENST00000547533 SNAPC4Q5SXM2 1469 aa16.57■□□□□ 0.24
AC055716.3-201ENST00000547533 ARAP1Q96P48 1450 aa16.57■□□□□ 0.24
AC055716.3-201ENST00000547533 MAGI1Q96QZ7 1491 aaPredicted RBP16.57■□□□□ 0.24
AC055716.3-201ENST00000547533 GRIN2BQ13224 1484 aa16.54■□□□□ 0.24
AC055716.3-201ENST00000547533 CUX1P39880 1505 aa16.52■□□□□ 0.24
AC055716.3-201ENST00000547533 PBRM1Q86U86 1689 aa16.52■□□□□ 0.23
AC055716.3-201ENST00000547533 CLASP1Q7Z460 1538 aa16.51■□□□□ 0.23
AC055716.3-201ENST00000547533 SYNJ2O15056 1496 aa16.5■□□□□ 0.23
AC055716.3-201ENST00000547533 GAPVD1Q14C86 1478 aa16.46■□□□□ 0.23
AC055716.3-201ENST00000547533 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
AC055716.3-201ENST00000547533 ABCA5Q8WWZ7 1642 aa16.39■□□□□ 0.21
AC055716.3-201ENST00000547533 WRNQ14191 1432 aaPredicted RBP eCLIP16.35■□□□□ 0.21
AC055716.3-201ENST00000547533 SUPT5HO00267 1087 aaKnown RBP16.34■□□□□ 0.21
AC055716.3-201ENST00000547533 GRIN2AQ12879 1464 aa16.31■□□□□ 0.2
AC055716.3-201ENST00000547533 BIVM-ERCC5R4GMW8 1640 aa16.3■□□□□ 0.2
AC055716.3-201ENST00000547533 AEBP2Q6ZN18 517 aaPredicted RBP16.29■□□□□ 0.2
AC055716.3-201ENST00000547533 ADAMTS12P58397 1594 aa16.29■□□□□ 0.2
AC055716.3-201ENST00000547533 TOP2BQ02880 1626 aa16.28■□□□□ 0.2
AC055716.3-201ENST00000547533 FHAD1B1AJZ9 1412 aa16.25■□□□□ 0.19
AC055716.3-201ENST00000547533 ERICH3Q5RHP9 1530 aa16.24■□□□□ 0.19
AC055716.3-201ENST00000547533 CEP170Q5SW79 1584 aa16.23■□□□□ 0.19
AC055716.3-201ENST00000547533 NUP160Q12769 1436 aa16.23■□□□□ 0.19
AC055716.3-201ENST00000547533 SHROOM2Q13796 1616 aa16.2■□□□□ 0.18
AC055716.3-201ENST00000547533 ERCC6L2Q5T890 1561 aa16.17■□□□□ 0.18
AC055716.3-201ENST00000547533 PRG4Q92954 1404 aaPredicted RBP16.11■□□□□ 0.17
AC055716.3-201ENST00000547533 NPM1P06748 294 aaKnown RBP eCLIP16.1■□□□□ 0.17
AC055716.3-201ENST00000547533 KIF13AQ9H1H9 1805 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 156.3 ms