RNA–Protein interactions for RNA: ENST00000546812.1

SSH1-205, Transcript of slingshot protein phosphatase 1, humanhuman

TSL 3

Gene SSH1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSH1-205ENST00000546812 NISCHQ9Y2I1 1504 aa23.69■■□□□ 1.38
SSH1-205ENST00000546812 ABCC9O60706 1549 aa21.91■■□□□ 1.1
SSH1-205ENST00000546812 CCDC180Q9P1Z9 1646 aa21.36■■□□□ 1.01
SSH1-205ENST00000546812 DNAJC5BQ9UF47 199 aa21.05■□□□□ 0.96
SSH1-205ENST00000546812 RB1CC1Q8TDY2 1594 aa20.62■□□□□ 0.89
SSH1-205ENST00000546812 PABPN1Q86U42 306 aaKnown RBP eCLIP20.4■□□□□ 0.86
SSH1-205ENST00000546812 NACADO15069 1562 aa20.38■□□□□ 0.85
SSH1-205ENST00000546812 DCAF8L2P0C7V8 631 aa20.28■□□□□ 0.84
SSH1-205ENST00000546812 BICRAQ9NZM4 1560 aa20.03■□□□□ 0.8
SSH1-205ENST00000546812 UNC13AQ9UPW8 1703 aa20.01■□□□□ 0.79
SSH1-205ENST00000546812 MYO15BQ96JP2 1530 aa19.98■□□□□ 0.79
SSH1-205ENST00000546812 CECR2Q9BXF3 1484 aa19.8■□□□□ 0.76
SSH1-205ENST00000546812 SHROOM4Q9ULL8 1493 aa19.75■□□□□ 0.75
SSH1-205ENST00000546812 CC2D2AQ9P2K1 1620 aa19.73■□□□□ 0.75
SSH1-205ENST00000546812 DNAJC5Q9H3Z4 198 aa19.68■□□□□ 0.74
SSH1-205ENST00000546812 EIF4G1Q04637 1599 aaKnown RBP19.58■□□□□ 0.73
SSH1-205ENST00000546812 DCAF1Q9Y4B6 1507 aa19.55■□□□□ 0.72
SSH1-205ENST00000546812 ZCCHC6Q5VYS8 1495 aaKnown RBP19.52■□□□□ 0.72
SSH1-205ENST00000546812 SCRIBQ14160 1630 aa19.46■□□□□ 0.71
SSH1-205ENST00000546812 CUX2O14529 1486 aa19.08■□□□□ 0.64
SSH1-205ENST00000546812 ERCC6Q03468 1493 aa18.96■□□□□ 0.63
SSH1-205ENST00000546812 NCAPD3P42695 1498 aa18.89■□□□□ 0.61
SSH1-205ENST00000546812 ATAD2BQ9ULI0 1458 aa18.74■□□□□ 0.59
SSH1-205ENST00000546812 NESP48681 1621 aa18.68■□□□□ 0.58
SSH1-205ENST00000546812 HMGXB3Q12766 1538 aa18.63■□□□□ 0.57
SSH1-205ENST00000546812 SMARCA2P51531 1590 aa18.62■□□□□ 0.57
SSH1-205ENST00000546812 TRIM41Q8WV44 630 aa18.59■□□□□ 0.57
SSH1-205ENST00000546812 SMARCA4P51532 1647 aa18.52■□□□□ 0.56
SSH1-205ENST00000546812 THOC2Q8NI27 1593 aaKnown RBP18.52■□□□□ 0.56
SSH1-205ENST00000546812 BAZ1BQ9UIG0 1483 aaKnown RBP18.51■□□□□ 0.55
SSH1-205ENST00000546812 LAMC3Q9Y6N6 1575 aa18.45■□□□□ 0.54
SSH1-205ENST00000546812 PDS5BQ9NTI5 1447 aa18.44■□□□□ 0.54
SSH1-205ENST00000546812 BAZ1AQ9NRL2 1556 aaPredicted RBP18.41■□□□□ 0.54
SSH1-205ENST00000546812 PEG3Q9GZU2 1588 aa18.38■□□□□ 0.53
SSH1-205ENST00000546812 KIF21AQ7Z4S6 1674 aa18.31■□□□□ 0.52
SSH1-205ENST00000546812 CADPSQ9ULU8 1353 aa18.3■□□□□ 0.52
SSH1-205ENST00000546812 MRC2Q9UBG0 1479 aa18.26■□□□□ 0.51
SSH1-205ENST00000546812 MROH2BQ7Z745 1585 aa18.25■□□□□ 0.51
SSH1-205ENST00000546812 OSCARQ8IYS5 282 aa18.22■□□□□ 0.51
SSH1-205ENST00000546812 WDR62O43379 1518 aa18.21■□□□□ 0.51
SSH1-205ENST00000546812 CEP164Q9UPV0 1460 aa18.09■□□□□ 0.49
SSH1-205ENST00000546812 FANCD2Q9BXW9 1451 aa18.05■□□□□ 0.48
SSH1-205ENST00000546812 CFTRP13569 1480 aa17.97■□□□□ 0.47
SSH1-205ENST00000546812 WIZO95785 1651 aa17.94■□□□□ 0.46
SSH1-205ENST00000546812 URB2Q14146 1524 aaKnown RBP17.92■□□□□ 0.46
SSH1-205ENST00000546812 RIMBP3CA6NJZ7 1639 aa17.88■□□□□ 0.45
SSH1-205ENST00000546812 RIMBP3BA6NNM3 1639 aa17.88■□□□□ 0.45
SSH1-205ENST00000546812 RIMBP3Q9UFD9 1639 aa17.88■□□□□ 0.45
SSH1-205ENST00000546812 ARHGEF11O15085 1522 aa17.82■□□□□ 0.44
SSH1-205ENST00000546812 CYB5RLQ6IPT4 315 aa17.81■□□□□ 0.44
SSH1-205ENST00000546812 ZNF608Q9ULD9 1512 aaPredicted RBP17.78■□□□□ 0.44
SSH1-205ENST00000546812 IFT140Q96RY7 1462 aa17.77■□□□□ 0.44
SSH1-205ENST00000546812 RSF1Q96T23 1441 aaPredicted RBP17.75■□□□□ 0.43
SSH1-205ENST00000546812 TRHP20396 242 aaPredicted RBP17.75■□□□□ 0.43
SSH1-205ENST00000546812 TOP2AP11388 1531 aaKnown RBP17.72■□□□□ 0.43
SSH1-205ENST00000546812 TOPBP1Q92547 1522 aa17.64■□□□□ 0.41
SSH1-205ENST00000546812 ARAP1Q96P48 1450 aa17.63■□□□□ 0.41
SSH1-205ENST00000546812 FBLN2P98095 1184 aa17.6■□□□□ 0.41
SSH1-205ENST00000546812 ABCC8Q09428 1581 aa17.6■□□□□ 0.41
SSH1-205ENST00000546812 AQRO60306 1485 aaKnown RBP eCLIP17.59■□□□□ 0.41
SSH1-205ENST00000546812 EIF4G3O43432 1585 aaKnown RBP17.58■□□□□ 0.41
SSH1-205ENST00000546812 CCDC88BA6NC98 1476 aa17.57■□□□□ 0.4
SSH1-205ENST00000546812 AEBP2Q6ZN18 517 aaPredicted RBP17.57■□□□□ 0.4
SSH1-205ENST00000546812 PRDM2Q13029 1718 aa17.54■□□□□ 0.4
SSH1-205ENST00000546812 DNMBPQ6XZF7 1577 aa17.5■□□□□ 0.39
SSH1-205ENST00000546812 TARBP1Q13395 1621 aaKnown RBP17.48■□□□□ 0.39
SSH1-205ENST00000546812 CHD1O14646 1710 aa17.48■□□□□ 0.39
SSH1-205ENST00000546812 POLA1P09884 1462 aaPredicted RBP17.44■□□□□ 0.38
SSH1-205ENST00000546812 TDRD9Q8NDG6 1382 aaKnown RBP17.43■□□□□ 0.38
SSH1-205ENST00000546812 RAD54L2Q9Y4B4 1467 aa17.4■□□□□ 0.38
SSH1-205ENST00000546812 CHMP7Q8WUX9 453 aaPredicted RBP17.4■□□□□ 0.38
SSH1-205ENST00000546812 SOGA1O94964 1423 aa17.39■□□□□ 0.38
SSH1-205ENST00000546812 CLASP1Q7Z460 1538 aa17.37■□□□□ 0.37
SSH1-205ENST00000546812 SNAPC4Q5SXM2 1469 aa17.36■□□□□ 0.37
SSH1-205ENST00000546812 SYNJ1O43426 1573 aa17.31■□□□□ 0.36
SSH1-205ENST00000546812 MAGI1Q96QZ7 1491 aaPredicted RBP17.31■□□□□ 0.36
SSH1-205ENST00000546812 GRIN2BQ13224 1484 aa17.27■□□□□ 0.36
SSH1-205ENST00000546812 WDR97A6NE52 1622 aa17.27■□□□□ 0.36
SSH1-205ENST00000546812 SYNJ2O15056 1496 aa17.26■□□□□ 0.35
SSH1-205ENST00000546812 GAPVD1Q14C86 1478 aa17.26■□□□□ 0.35
SSH1-205ENST00000546812 FGD5Q6ZNL6 1462 aa17.25■□□□□ 0.35
SSH1-205ENST00000546812 CUX1P39880 1505 aa17.16■□□□□ 0.34
SSH1-205ENST00000546812 ERCC6L2Q5T890 1561 aa17.06■□□□□ 0.32
SSH1-205ENST00000546812 ABCA10Q8WWZ4 1543 aa17.05■□□□□ 0.32
SSH1-205ENST00000546812 GRIN2AQ12879 1464 aa17.03■□□□□ 0.32
SSH1-205ENST00000546812 PBRM1Q86U86 1689 aa17.02■□□□□ 0.32
SSH1-205ENST00000546812 NUP160Q12769 1436 aa17.02■□□□□ 0.31
SSH1-205ENST00000546812 CEP170Q5SW79 1584 aa17■□□□□ 0.31
SSH1-205ENST00000546812 ABCA5Q8WWZ7 1642 aa16.99■□□□□ 0.31
SSH1-205ENST00000546812 FAM69CQ0P6D2 419 aa16.93■□□□□ 0.3
SSH1-205ENST00000546812 FHAD1B1AJZ9 1412 aa16.93■□□□□ 0.3
SSH1-205ENST00000546812 WRNQ14191 1432 aaPredicted RBP eCLIP16.92■□□□□ 0.39e-6■■■■■ 50.1
SSH1-205ENST00000546812 SHROOM2Q13796 1616 aa16.92■□□□□ 0.3
SSH1-205ENST00000546812 ADAMTS12P58397 1594 aa16.91■□□□□ 0.3
SSH1-205ENST00000546812 PRG4Q92954 1404 aaPredicted RBP16.9■□□□□ 0.3
SSH1-205ENST00000546812 JPH4Q96JJ6 628 aa16.9■□□□□ 0.3
SSH1-205ENST00000546812 KDM4FA0A1W2PPD8 638 aa16.89■□□□□ 0.29
SSH1-205ENST00000546812 NPM1P06748 294 aaKnown RBP eCLIP16.88■□□□□ 0.29
SSH1-205ENST00000546812 KIF13AQ9H1H9 1805 aa16.88■□□□□ 0.29
SSH1-205ENST00000546812 ABCC10Q5T3U5 1492 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms