RNA–Protein interactions for RNA: ENST00000546229.5

COPS7A-221, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 3

Gene COPS7A, Length 744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-221ENST00000546229 NISCHQ9Y2I1 1504 aa32.16■■■□□ 2.74
COPS7A-221ENST00000546229 CCDC180Q9P1Z9 1646 aa28.95■■■□□ 2.23
COPS7A-221ENST00000546229 ABCC9O60706 1549 aa28.85■■■□□ 2.21
COPS7A-221ENST00000546229 RB1CC1Q8TDY2 1594 aa27.48■■□□□ 1.99
COPS7A-221ENST00000546229 NACADO15069 1562 aa27.31■■□□□ 1.96
COPS7A-221ENST00000546229 DNAJC5BQ9UF47 199 aa27.14■■□□□ 1.94
COPS7A-221ENST00000546229 MYO15BQ96JP2 1530 aa27■■□□□ 1.91
COPS7A-221ENST00000546229 UNC13AQ9UPW8 1703 aa27■■□□□ 1.91
COPS7A-221ENST00000546229 BICRAQ9NZM4 1560 aa26.83■■□□□ 1.89
COPS7A-221ENST00000546229 DCAF8L2P0C7V8 631 aa26.76■■□□□ 1.87
COPS7A-221ENST00000546229 PABPN1Q86U42 306 aaKnown RBP eCLIP26.75■■□□□ 1.87
COPS7A-221ENST00000546229 ZCCHC6Q5VYS8 1495 aaKnown RBP26.71■■□□□ 1.87
COPS7A-221ENST00000546229 DCAF1Q9Y4B6 1507 aa26.63■■□□□ 1.85
COPS7A-221ENST00000546229 SHROOM4Q9ULL8 1493 aa26.42■■□□□ 1.82
COPS7A-221ENST00000546229 SCRIBQ14160 1630 aa26.28■■□□□ 1.8
COPS7A-221ENST00000546229 CC2D2AQ9P2K1 1620 aa26.14■■□□□ 1.77
COPS7A-221ENST00000546229 EIF4G1Q04637 1599 aaKnown RBP26.09■■□□□ 1.77
COPS7A-221ENST00000546229 CECR2Q9BXF3 1484 aa26■■□□□ 1.75
COPS7A-221ENST00000546229 NCAPD3P42695 1498 aa25.21■■□□□ 1.63
COPS7A-221ENST00000546229 SMARCA4P51532 1647 aa25.13■■□□□ 1.61
COPS7A-221ENST00000546229 ATAD2BQ9ULI0 1458 aa25.13■■□□□ 1.61
COPS7A-221ENST00000546229 HMGXB3Q12766 1538 aa25.08■■□□□ 1.61
COPS7A-221ENST00000546229 SMARCA2P51531 1590 aa25.03■■□□□ 1.6
COPS7A-221ENST00000546229 PEG3Q9GZU2 1588 aa24.96■■□□□ 1.59
COPS7A-221ENST00000546229 BAZ1AQ9NRL2 1556 aaPredicted RBP24.94■■□□□ 1.58
COPS7A-221ENST00000546229 CUX2O14529 1486 aa24.94■■□□□ 1.58
COPS7A-221ENST00000546229 DNAJC5Q9H3Z4 198 aa24.88■■□□□ 1.57
COPS7A-221ENST00000546229 ERCC6Q03468 1493 aa24.83■■□□□ 1.56
COPS7A-221ENST00000546229 NESP48681 1621 aa24.83■■□□□ 1.56
COPS7A-221ENST00000546229 BAZ1BQ9UIG0 1483 aaKnown RBP24.82■■□□□ 1.56
COPS7A-221ENST00000546229 MROH2BQ7Z745 1585 aa24.8■■□□□ 1.56
COPS7A-221ENST00000546229 THOC2Q8NI27 1593 aaKnown RBP24.7■■□□□ 1.54
COPS7A-221ENST00000546229 LAMC3Q9Y6N6 1575 aa24.66■■□□□ 1.54
COPS7A-221ENST00000546229 KIF21AQ7Z4S6 1674 aa24.56■■□□□ 1.52
COPS7A-221ENST00000546229 WIZO95785 1651 aa24.48■■□□□ 1.51
COPS7A-221ENST00000546229 PDS5BQ9NTI5 1447 aa24.4■■□□□ 1.5
COPS7A-221ENST00000546229 CADPSQ9ULU8 1353 aa24.38■■□□□ 1.49
COPS7A-221ENST00000546229 WDR62O43379 1518 aa24.3■■□□□ 1.48
COPS7A-221ENST00000546229 MRC2Q9UBG0 1479 aa24.28■■□□□ 1.48
COPS7A-221ENST00000546229 RSF1Q96T23 1441 aaPredicted RBP24.23■■□□□ 1.47
COPS7A-221ENST00000546229 TOP2AP11388 1531 aaKnown RBP24.18■■□□□ 1.46
COPS7A-221ENST00000546229 CFTRP13569 1480 aa24.17■■□□□ 1.46
COPS7A-221ENST00000546229 CEP164Q9UPV0 1460 aa24.14■■□□□ 1.46
COPS7A-221ENST00000546229 FANCD2Q9BXW9 1451 aa24.13■■□□□ 1.45
COPS7A-221ENST00000546229 URB2Q14146 1524 aaKnown RBP24■■□□□ 1.43
COPS7A-221ENST00000546229 PRDM2Q13029 1718 aa23.99■■□□□ 1.43
COPS7A-221ENST00000546229 CCDC88BA6NC98 1476 aa23.85■■□□□ 1.41
COPS7A-221ENST00000546229 TOPBP1Q92547 1522 aa23.69■■□□□ 1.38
COPS7A-221ENST00000546229 ZNF608Q9ULD9 1512 aaPredicted RBP23.69■■□□□ 1.38
COPS7A-221ENST00000546229 IFT140Q96RY7 1462 aa23.67■■□□□ 1.38
COPS7A-221ENST00000546229 DNMBPQ6XZF7 1577 aa23.62■■□□□ 1.37
COPS7A-221ENST00000546229 TRIM41Q8WV44 630 aa23.62■■□□□ 1.37
COPS7A-221ENST00000546229 EIF4G3O43432 1585 aaKnown RBP23.6■■□□□ 1.37
COPS7A-221ENST00000546229 OSCARQ8IYS5 282 aa23.59■■□□□ 1.37
COPS7A-221ENST00000546229 TARBP1Q13395 1621 aaKnown RBP23.57■■□□□ 1.36
COPS7A-221ENST00000546229 ABCC8Q09428 1581 aa23.56■■□□□ 1.36
COPS7A-221ENST00000546229 RIMBP3CA6NJZ7 1639 aa23.51■■□□□ 1.35
COPS7A-221ENST00000546229 RIMBP3BA6NNM3 1639 aa23.51■■□□□ 1.35
COPS7A-221ENST00000546229 RIMBP3Q9UFD9 1639 aa23.51■■□□□ 1.35
COPS7A-221ENST00000546229 POLA1P09884 1462 aaPredicted RBP23.47■■□□□ 1.35
COPS7A-221ENST00000546229 ARHGEF11O15085 1522 aa23.42■■□□□ 1.34
COPS7A-221ENST00000546229 CHD1O14646 1710 aa23.41■■□□□ 1.34
COPS7A-221ENST00000546229 AQRO60306 1485 aaKnown RBP eCLIP23.39■■□□□ 1.34
COPS7A-221ENST00000546229 RAD54L2Q9Y4B4 1467 aa23.33■■□□□ 1.33
COPS7A-221ENST00000546229 CUX1P39880 1505 aa23.31■■□□□ 1.32
COPS7A-221ENST00000546229 WDR97A6NE52 1622 aa23.3■■□□□ 1.32
COPS7A-221ENST00000546229 FGD5Q6ZNL6 1462 aa23.28■■□□□ 1.32
COPS7A-221ENST00000546229 SOGA1O94964 1423 aa23.23■■□□□ 1.31
COPS7A-221ENST00000546229 ARAP1Q96P48 1450 aa23.22■■□□□ 1.31
COPS7A-221ENST00000546229 CLASP1Q7Z460 1538 aa23.2■■□□□ 1.3
COPS7A-221ENST00000546229 TDRD9Q8NDG6 1382 aaKnown RBP23.2■■□□□ 1.3
COPS7A-221ENST00000546229 SNAPC4Q5SXM2 1469 aa23.19■■□□□ 1.3
COPS7A-221ENST00000546229 MAGI1Q96QZ7 1491 aaPredicted RBP23.13■■□□□ 1.29
COPS7A-221ENST00000546229 GRIN2BQ13224 1484 aa23.1■■□□□ 1.29
COPS7A-221ENST00000546229 PBRM1Q86U86 1689 aa23.09■■□□□ 1.29
COPS7A-221ENST00000546229 ABCA5Q8WWZ7 1642 aa23.08■■□□□ 1.29
COPS7A-221ENST00000546229 SYNJ2O15056 1496 aa23.05■■□□□ 1.28
COPS7A-221ENST00000546229 SYNJ1O43426 1573 aa23.05■■□□□ 1.28
COPS7A-221ENST00000546229 ABCA10Q8WWZ4 1543 aa23.04■■□□□ 1.28
COPS7A-221ENST00000546229 CYB5RLQ6IPT4 315 aa23.03■■□□□ 1.28
COPS7A-221ENST00000546229 FBLN2P98095 1184 aa23.02■■□□□ 1.28
COPS7A-221ENST00000546229 GAPVD1Q14C86 1478 aa22.99■■□□□ 1.27
COPS7A-221ENST00000546229 BIVM-ERCC5R4GMW8 1640 aa22.95■■□□□ 1.26
COPS7A-221ENST00000546229 TOP2BQ02880 1626 aa22.91■■□□□ 1.26
COPS7A-221ENST00000546229 CHMP7Q8WUX9 453 aaPredicted RBP22.9■■□□□ 1.26
COPS7A-221ENST00000546229 ADAMTS12P58397 1594 aa22.89■■□□□ 1.26
COPS7A-221ENST00000546229 GRIN2AQ12879 1464 aa22.84■■□□□ 1.25
COPS7A-221ENST00000546229 WRNQ14191 1432 aaPredicted RBP eCLIP22.83■■□□□ 1.25
COPS7A-221ENST00000546229 SUPT5HO00267 1087 aaKnown RBP22.83■■□□□ 1.25
COPS7A-221ENST00000546229 CEP170Q5SW79 1584 aa22.82■■□□□ 1.24
COPS7A-221ENST00000546229 NUP160Q12769 1436 aa22.82■■□□□ 1.24
COPS7A-221ENST00000546229 ERCC6L2Q5T890 1561 aa22.8■■□□□ 1.24
COPS7A-221ENST00000546229 SHROOM2Q13796 1616 aa22.78■■□□□ 1.24
COPS7A-221ENST00000546229 ERICH3Q5RHP9 1530 aa22.74■■□□□ 1.23
COPS7A-221ENST00000546229 FHAD1B1AJZ9 1412 aa22.71■■□□□ 1.23
COPS7A-221ENST00000546229 TRHP20396 242 aaPredicted RBP22.69■■□□□ 1.22
COPS7A-221ENST00000546229 RUSC2Q8N2Y8 1516 aa22.59■■□□□ 1.21
COPS7A-221ENST00000546229 PRG4Q92954 1404 aaPredicted RBP22.47■■□□□ 1.19
COPS7A-221ENST00000546229 KIF13AQ9H1H9 1805 aa22.46■■□□□ 1.19
COPS7A-221ENST00000546229 CUL7Q14999 1698 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms