RNA–Protein interactions for RNA: ENST00000546026.1

CIT-218, Transcript of citron rho-interacting serine/threonine kinase, humanhuman

TSL 3

Gene CIT, Length 677 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIT-218ENST00000546026 NISCHQ9Y2I1 1504 aa23.22■■□□□ 1.31
CIT-218ENST00000546026 CCDC180Q9P1Z9 1646 aa20.31■□□□□ 0.84
CIT-218ENST00000546026 ZCCHC6Q5VYS8 1495 aaKnown RBP19.48■□□□□ 0.71
CIT-218ENST00000546026 DCAF1Q9Y4B6 1507 aa19.26■□□□□ 0.67
CIT-218ENST00000546026 ABCC9O60706 1549 aa19.19■□□□□ 0.66
CIT-218ENST00000546026 DCAF8L2P0C7V8 631 aa19.13■□□□□ 0.65
CIT-218ENST00000546026 MYO15BQ96JP2 1530 aa19.08■□□□□ 0.64
CIT-218ENST00000546026 NACADO15069 1562 aa18.94■□□□□ 0.62
CIT-218ENST00000546026 RB1CC1Q8TDY2 1594 aa18.78■□□□□ 0.6
CIT-218ENST00000546026 SHROOM4Q9ULL8 1493 aa18.77■□□□□ 0.59
CIT-218ENST00000546026 SCRIBQ14160 1630 aa18.56■□□□□ 0.56
CIT-218ENST00000546026 UNC13AQ9UPW8 1703 aa18.34■□□□□ 0.53
CIT-218ENST00000546026 BICRAQ9NZM4 1560 aa18.18■□□□□ 0.5
CIT-218ENST00000546026 PABPN1Q86U42 306 aaKnown RBP eCLIP18.07■□□□□ 0.48
CIT-218ENST00000546026 SUPT5HO00267 1087 aaKnown RBP18.06■□□□□ 0.48
CIT-218ENST00000546026 CECR2Q9BXF3 1484 aa18■□□□□ 0.47
CIT-218ENST00000546026 RSF1Q96T23 1441 aaPredicted RBP17.97■□□□□ 0.47
CIT-218ENST00000546026 BAZ1AQ9NRL2 1556 aaPredicted RBP17.94■□□□□ 0.46
CIT-218ENST00000546026 MROH2BQ7Z745 1585 aa17.9■□□□□ 0.46
CIT-218ENST00000546026 SMARCA4P51532 1647 aa17.84■□□□□ 0.45
CIT-218ENST00000546026 WIZO95785 1651 aa17.74■□□□□ 0.43
CIT-218ENST00000546026 PEG3Q9GZU2 1588 aa17.67■□□□□ 0.42
CIT-218ENST00000546026 EIF4G1Q04637 1599 aaKnown RBP17.63■□□□□ 0.41
CIT-218ENST00000546026 SMARCA2P51531 1590 aa17.6■□□□□ 0.41
CIT-218ENST00000546026 TOP2AP11388 1531 aaKnown RBP17.59■□□□□ 0.41
CIT-218ENST00000546026 ATAD2BQ9ULI0 1458 aa17.59■□□□□ 0.41
CIT-218ENST00000546026 NCAPD3P42695 1498 aa17.49■□□□□ 0.39
CIT-218ENST00000546026 BAZ1BQ9UIG0 1483 aaKnown RBP17.47■□□□□ 0.39
CIT-218ENST00000546026 HMGXB3Q12766 1538 aa17.44■□□□□ 0.38
CIT-218ENST00000546026 CCDC88BA6NC98 1476 aa17.41■□□□□ 0.38
CIT-218ENST00000546026 CC2D2AQ9P2K1 1620 aa17.39■□□□□ 0.37
CIT-218ENST00000546026 CHIC1Q5VXU3 224 aa17.3■□□□□ 0.36
CIT-218ENST00000546026 CFTRP13569 1480 aa17.05■□□□□ 0.32
CIT-218ENST00000546026 TRIM41Q8WV44 630 aa17.04■□□□□ 0.32
CIT-218ENST00000546026 CADPSQ9ULU8 1353 aa17.02■□□□□ 0.31
CIT-218ENST00000546026 DNAJC5BQ9UF47 199 aa16.99■□□□□ 0.31
CIT-218ENST00000546026 ABCC8Q09428 1581 aa16.95■□□□□ 0.3
CIT-218ENST00000546026 PRDM2Q13029 1718 aa16.95■□□□□ 0.3
CIT-218ENST00000546026 WRNQ14191 1432 aaPredicted RBP eCLIP16.92■□□□□ 0.3
CIT-218ENST00000546026 LAMC3Q9Y6N6 1575 aa16.89■□□□□ 0.3
CIT-218ENST00000546026 NESP48681 1621 aa16.81■□□□□ 0.28
CIT-218ENST00000546026 SYNJ1O43426 1573 aa16.81■□□□□ 0.28
CIT-218ENST00000546026 FANCD2Q9BXW9 1451 aa16.8■□□□□ 0.28
CIT-218ENST00000546026 TOP2BQ02880 1626 aa16.79■□□□□ 0.28
CIT-218ENST00000546026 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
CIT-218ENST00000546026 PDS5BQ9NTI5 1447 aa16.77■□□□□ 0.27
CIT-218ENST00000546026 CUX1P39880 1505 aa16.74■□□□□ 0.27
CIT-218ENST00000546026 CEP164Q9UPV0 1460 aa16.7■□□□□ 0.26
CIT-218ENST00000546026 EEA1Q15075 1411 aa16.7■□□□□ 0.26
CIT-218ENST00000546026 FAM9AQ8IZU1 332 aaPredicted RBP16.65■□□□□ 0.26
CIT-218ENST00000546026 DNMBPQ6XZF7 1577 aa16.64■□□□□ 0.25
CIT-218ENST00000546026 SOGA1O94964 1423 aa16.64■□□□□ 0.25
CIT-218ENST00000546026 KIF21AQ7Z4S6 1674 aa16.62■□□□□ 0.25
CIT-218ENST00000546026 TOPBP1Q92547 1522 aa16.61■□□□□ 0.25
CIT-218ENST00000546026 LOC105371045A0A1W2PR82 267 aa16.59■□□□□ 0.25
CIT-218ENST00000546026 CSRNP3Q8WYN3 585 aa16.58■□□□□ 0.24
CIT-218ENST00000546026 URB2Q14146 1524 aaKnown RBP16.58■□□□□ 0.24
CIT-218ENST00000546026 RUSC2Q8N2Y8 1516 aa16.58■□□□□ 0.24
CIT-218ENST00000546026 FGD5Q6ZNL6 1462 aa16.57■□□□□ 0.24
CIT-218ENST00000546026 MRC2Q9UBG0 1479 aa16.54■□□□□ 0.24
CIT-218ENST00000546026 KIF27Q86VH2 1401 aa16.52■□□□□ 0.23
CIT-218ENST00000546026 POLA1P09884 1462 aaPredicted RBP16.51■□□□□ 0.23
CIT-218ENST00000546026 ERCC6Q03468 1493 aa16.48■□□□□ 0.23
CIT-218ENST00000546026 ABCA10Q8WWZ4 1543 aa16.46■□□□□ 0.23
CIT-218ENST00000546026 CUX2O14529 1486 aa16.45■□□□□ 0.22
CIT-218ENST00000546026 WDR62O43379 1518 aa16.45■□□□□ 0.22
CIT-218ENST00000546026 RAD54L2Q9Y4B4 1467 aa16.43■□□□□ 0.22
CIT-218ENST00000546026 KIF21BO75037 1637 aa16.43■□□□□ 0.22
CIT-218ENST00000546026 GOLGA3Q08378 1498 aa16.41■□□□□ 0.22
CIT-218ENST00000546026 THOC2Q8NI27 1593 aaKnown RBP16.38■□□□□ 0.21
CIT-218ENST00000546026 WDR97A6NE52 1622 aa16.38■□□□□ 0.21
CIT-218ENST00000546026 PRXQ9BXM0 1461 aa16.38■□□□□ 0.21
CIT-218ENST00000546026 IGF1RP08069 1367 aa16.38■□□□□ 0.21
CIT-218ENST00000546026 TARBP1Q13395 1621 aaKnown RBP16.37■□□□□ 0.21
CIT-218ENST00000546026 TNIKQ9UKE5 1360 aa16.37■□□□□ 0.21
CIT-218ENST00000546026 ERICH3Q5RHP9 1530 aa16.35■□□□□ 0.21
CIT-218ENST00000546026 EHMT2Q96KQ7 1210 aa16.35■□□□□ 0.21
CIT-218ENST00000546026 IFT140Q96RY7 1462 aa16.34■□□□□ 0.21
CIT-218ENST00000546026 UBTFP17480 764 aaKnown RBP16.32■□□□□ 0.2
CIT-218ENST00000546026 ABCA5Q8WWZ7 1642 aa16.31■□□□□ 0.2
CIT-218ENST00000546026 RAPGEF2Q9Y4G8 1499 aa16.31■□□□□ 0.2
CIT-218ENST00000546026 GAPVD1Q14C86 1478 aa16.29■□□□□ 0.2
CIT-218ENST00000546026 TDRD9Q8NDG6 1382 aaKnown RBP16.29■□□□□ 0.2
CIT-218ENST00000546026 CARMIL1Q5VZK9 1371 aa16.28■□□□□ 0.2
CIT-218ENST00000546026 CUL7Q14999 1698 aa16.25■□□□□ 0.19
CIT-218ENST00000546026 CEP162Q5TB80 1403 aa16.21■□□□□ 0.19
CIT-218ENST00000546026 AQRO60306 1485 aaKnown RBP eCLIP16.2■□□□□ 0.18
CIT-218ENST00000546026 GRIN2BQ13224 1484 aa16.19■□□□□ 0.18
CIT-218ENST00000546026 PBRM1Q86U86 1689 aa16.18■□□□□ 0.18
CIT-218ENST00000546026 ZNF608Q9ULD9 1512 aaPredicted RBP16.18■□□□□ 0.18
CIT-218ENST00000546026 FHAD1B1AJZ9 1412 aa16.14■□□□□ 0.17
CIT-218ENST00000546026 EIF4G3O43432 1585 aaKnown RBP16.13■□□□□ 0.17
CIT-218ENST00000546026 CLIP1P30622 1438 aa16.12■□□□□ 0.17
CIT-218ENST00000546026 ADAMTS12P58397 1594 aa16.09■□□□□ 0.17
CIT-218ENST00000546026 MAGI1Q96QZ7 1491 aaPredicted RBP16.07■□□□□ 0.16
CIT-218ENST00000546026 SNAPC4Q5SXM2 1469 aa16.05■□□□□ 0.16
CIT-218ENST00000546026 CTTNBP2Q8WZ74 1663 aa16.04■□□□□ 0.16
CIT-218ENST00000546026 SYNJ2O15056 1496 aa16■□□□□ 0.15
CIT-218ENST00000546026 RANGAP1P46060 587 aaPredicted RBP15.99■□□□□ 0.15
CIT-218ENST00000546026 ARHGAP35Q9NRY4 1499 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms