RNA–Protein interactions for RNA: ENST00000544738.5

DDX55-212, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 956 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-212ENST00000544738 NISCHQ9Y2I1 1504 aa40.41■■■■■ 4.06
DDX55-212ENST00000544738 ABCC9O60706 1549 aa37.41■■■■□ 3.58
DDX55-212ENST00000544738 CCDC180Q9P1Z9 1646 aa36.41■■■■□ 3.42
DDX55-212ENST00000544738 DNAJC5BQ9UF47 199 aa35.86■■■■□ 3.33
DDX55-212ENST00000544738 RB1CC1Q8TDY2 1594 aa35.15■■■■□ 3.22
DDX55-212ENST00000544738 PABPN1Q86U42 306 aaKnown RBP eCLIP34.86■■■■□ 3.17
DDX55-212ENST00000544738 DCAF8L2P0C7V8 631 aa34.79■■■■□ 3.16
DDX55-212ENST00000544738 NACADO15069 1562 aa34.71■■■■□ 3.15
DDX55-212ENST00000544738 UNC13AQ9UPW8 1703 aa34.24■■■■□ 3.07
DDX55-212ENST00000544738 BICRAQ9NZM4 1560 aa34.14■■■■□ 3.06
DDX55-212ENST00000544738 MYO15BQ96JP2 1530 aa33.92■■■■□ 3.02
DDX55-212ENST00000544738 CECR2Q9BXF3 1484 aa33.76■■■□□ 2.99
DDX55-212ENST00000544738 CC2D2AQ9P2K1 1620 aa33.65■■■□□ 2.98
DDX55-212ENST00000544738 SHROOM4Q9ULL8 1493 aa33.51■■■□□ 2.96
DDX55-212ENST00000544738 DNAJC5Q9H3Z4 198 aa33.45■■■□□ 2.95
DDX55-212ENST00000544738 EIF4G1Q04637 1599 aaKnown RBP33.38■■■□□ 2.93
DDX55-212ENST00000544738 SCRIBQ14160 1630 aa33.3■■■□□ 2.92
DDX55-212ENST00000544738 ZCCHC6Q5VYS8 1495 aaKnown RBP33.27■■■□□ 2.92
DDX55-212ENST00000544738 DCAF1Q9Y4B6 1507 aa33.23■■■□□ 2.91
DDX55-212ENST00000544738 CUX2O14529 1486 aa32.44■■■□□ 2.78
DDX55-212ENST00000544738 ERCC6Q03468 1493 aa32.36■■■□□ 2.77
DDX55-212ENST00000544738 NCAPD3P42695 1498 aa32.12■■■□□ 2.73
DDX55-212ENST00000544738 ATAD2BQ9ULI0 1458 aa31.93■■■□□ 2.7
DDX55-212ENST00000544738 NESP48681 1621 aa31.91■■■□□ 2.7
DDX55-212ENST00000544738 TRIM41Q8WV44 630 aa31.79■■■□□ 2.68
DDX55-212ENST00000544738 SMARCA2P51531 1590 aa31.74■■■□□ 2.67
DDX55-212ENST00000544738 HMGXB3Q12766 1538 aa31.71■■■□□ 2.67
DDX55-212ENST00000544738 SMARCA4P51532 1647 aa31.63■■■□□ 2.65
DDX55-212ENST00000544738 BAZ1BQ9UIG0 1483 aaKnown RBP31.59■■■□□ 2.65
DDX55-212ENST00000544738 THOC2Q8NI27 1593 aaKnown RBP31.57■■■□□ 2.64
DDX55-212ENST00000544738 LAMC3Q9Y6N6 1575 aa31.44■■■□□ 2.62
DDX55-212ENST00000544738 PDS5BQ9NTI5 1447 aa31.41■■■□□ 2.62
DDX55-212ENST00000544738 BAZ1AQ9NRL2 1556 aaPredicted RBP31.38■■■□□ 2.61
DDX55-212ENST00000544738 KIF21AQ7Z4S6 1674 aa31.33■■■□□ 2.61
DDX55-212ENST00000544738 PEG3Q9GZU2 1588 aa31.26■■■□□ 2.6
DDX55-212ENST00000544738 CADPSQ9ULU8 1353 aa31.17■■■□□ 2.58
DDX55-212ENST00000544738 MROH2BQ7Z745 1585 aa31.16■■■□□ 2.58
DDX55-212ENST00000544738 MRC2Q9UBG0 1479 aa31.13■■■□□ 2.57
DDX55-212ENST00000544738 OSCARQ8IYS5 282 aa31.04■■■□□ 2.56
DDX55-212ENST00000544738 WDR62O43379 1518 aa31.01■■■□□ 2.55
DDX55-212ENST00000544738 CEP164Q9UPV0 1460 aa30.87■■■□□ 2.53
DDX55-212ENST00000544738 FANCD2Q9BXW9 1451 aa30.79■■■□□ 2.52
DDX55-212ENST00000544738 WIZO95785 1651 aa30.71■■■□□ 2.51
DDX55-212ENST00000544738 CFTRP13569 1480 aa30.59■■■□□ 2.49
DDX55-212ENST00000544738 URB2Q14146 1524 aaKnown RBP30.56■■■□□ 2.48
DDX55-212ENST00000544738 RIMBP3CA6NJZ7 1639 aa30.52■■■□□ 2.48
DDX55-212ENST00000544738 RIMBP3BA6NNM3 1639 aa30.52■■■□□ 2.48
DDX55-212ENST00000544738 RIMBP3Q9UFD9 1639 aa30.52■■■□□ 2.48
DDX55-212ENST00000544738 CYB5RLQ6IPT4 315 aa30.42■■■□□ 2.46
DDX55-212ENST00000544738 ARHGEF11O15085 1522 aa30.37■■■□□ 2.45
DDX55-212ENST00000544738 TRHP20396 242 aaPredicted RBP30.36■■■□□ 2.45
DDX55-212ENST00000544738 ZNF608Q9ULD9 1512 aaPredicted RBP30.35■■■□□ 2.45
DDX55-212ENST00000544738 IFT140Q96RY7 1462 aa30.28■■■□□ 2.44
DDX55-212ENST00000544738 RSF1Q96T23 1441 aaPredicted RBP30.28■■■□□ 2.44
DDX55-212ENST00000544738 TOP2AP11388 1531 aaKnown RBP30.23■■■□□ 2.43
DDX55-212ENST00000544738 FBLN2P98095 1184 aa30.13■■■□□ 2.41
DDX55-212ENST00000544738 TOPBP1Q92547 1522 aa30.09■■■□□ 2.41
DDX55-212ENST00000544738 ARAP1Q96P48 1450 aa30.04■■■□□ 2.4
DDX55-212ENST00000544738 AEBP2Q6ZN18 517 aaPredicted RBP30.03■■■□□ 2.4
DDX55-212ENST00000544738 AQRO60306 1485 aaKnown RBP eCLIP30.03■■■□□ 2.41e-6■■■■■ 42.9
DDX55-212ENST00000544738 EIF4G3O43432 1585 aaKnown RBP30.02■■■□□ 2.4
DDX55-212ENST00000544738 CCDC88BA6NC98 1476 aa30.01■■■□□ 2.4
DDX55-212ENST00000544738 PRDM2Q13029 1718 aa30.01■■■□□ 2.39
DDX55-212ENST00000544738 ABCC8Q09428 1581 aa29.96■■■□□ 2.39
DDX55-212ENST00000544738 CHD1O14646 1710 aa29.93■■■□□ 2.38
DDX55-212ENST00000544738 DNMBPQ6XZF7 1577 aa29.86■■■□□ 2.37
DDX55-212ENST00000544738 TARBP1Q13395 1621 aaKnown RBP29.82■■■□□ 2.36
DDX55-212ENST00000544738 TDRD9Q8NDG6 1382 aaKnown RBP29.77■■■□□ 2.36
DDX55-212ENST00000544738 POLA1P09884 1462 aaPredicted RBP29.74■■■□□ 2.35
DDX55-212ENST00000544738 CHMP7Q8WUX9 453 aaPredicted RBP29.73■■■□□ 2.35
DDX55-212ENST00000544738 RAD54L2Q9Y4B4 1467 aa29.73■■■□□ 2.35
DDX55-212ENST00000544738 SOGA1O94964 1423 aa29.69■■■□□ 2.34
DDX55-212ENST00000544738 SNAPC4Q5SXM2 1469 aa29.63■■■□□ 2.33
DDX55-212ENST00000544738 CLASP1Q7Z460 1538 aa29.57■■■□□ 2.32
DDX55-212ENST00000544738 SYNJ1O43426 1573 aa29.53■■■□□ 2.32
DDX55-212ENST00000544738 MAGI1Q96QZ7 1491 aaPredicted RBP29.47■■■□□ 2.31
DDX55-212ENST00000544738 FGD5Q6ZNL6 1462 aa29.46■■■□□ 2.31
DDX55-212ENST00000544738 GRIN2BQ13224 1484 aa29.44■■■□□ 2.3
DDX55-212ENST00000544738 GAPVD1Q14C86 1478 aa29.43■■■□□ 2.3
DDX55-212ENST00000544738 SYNJ2O15056 1496 aa29.41■■■□□ 2.3
DDX55-212ENST00000544738 WDR97A6NE52 1622 aa29.38■■■□□ 2.29
DDX55-212ENST00000544738 CUX1P39880 1505 aa29.3■■■□□ 2.28
DDX55-212ENST00000544738 SUPT5HO00267 1087 aaKnown RBP29.16■■■□□ 2.26
DDX55-212ENST00000544738 ERCC6L2Q5T890 1561 aa29.15■■■□□ 2.26
DDX55-212ENST00000544738 PBRM1Q86U86 1689 aa29.14■■■□□ 2.26
DDX55-212ENST00000544738 ABCA10Q8WWZ4 1543 aa29.04■■■□□ 2.24
DDX55-212ENST00000544738 GRIN2AQ12879 1464 aa29.04■■■□□ 2.24
DDX55-212ENST00000544738 CEP170Q5SW79 1584 aa29.01■■■□□ 2.23
DDX55-212ENST00000544738 ABCA5Q8WWZ7 1642 aa28.99■■■□□ 2.23
DDX55-212ENST00000544738 NUP160Q12769 1436 aa28.95■■■□□ 2.23
DDX55-212ENST00000544738 FAM69CQ0P6D2 419 aa28.92■■■□□ 2.22
DDX55-212ENST00000544738 WRNQ14191 1432 aaPredicted RBP eCLIP28.86■■■□□ 2.21
DDX55-212ENST00000544738 FHAD1B1AJZ9 1412 aa28.86■■■□□ 2.21
DDX55-212ENST00000544738 KIF13AQ9H1H9 1805 aa28.85■■■□□ 2.21
DDX55-212ENST00000544738 ADAMTS12P58397 1594 aa28.85■■■□□ 2.21
DDX55-212ENST00000544738 NPM1P06748 294 aaKnown RBP eCLIP28.85■■■□□ 2.21
DDX55-212ENST00000544738 JPH4Q96JJ6 628 aa28.84■■■□□ 2.21
DDX55-212ENST00000544738 PRG4Q92954 1404 aaPredicted RBP28.84■■■□□ 2.21
DDX55-212ENST00000544738 SHROOM2Q13796 1616 aa28.82■■■□□ 2.2
DDX55-212ENST00000544738 KDM4FA0A1W2PPD8 638 aa28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms