RNA–Protein interactions for RNA: ENST00000543727.5

TSFM-208, Transcript of Ts translation elongation factor, mitochondrial, humanhuman

TSL 1 (best) BASIC

Gene TSFM, Length 651 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSFM-208ENST00000543727 NISCHQ9Y2I1 1504 aa43.39■■■■■ 4.54
TSFM-208ENST00000543727 CCDC180Q9P1Z9 1646 aa38.72■■■■□ 3.79
TSFM-208ENST00000543727 ABCC9O60706 1549 aa37.46■■■■□ 3.59
TSFM-208ENST00000543727 NACADO15069 1562 aa36.3■■■■□ 3.4
TSFM-208ENST00000543727 RB1CC1Q8TDY2 1594 aa36.29■■■■□ 3.4
TSFM-208ENST00000543727 ZCCHC6Q5VYS8 1495 aaKnown RBP36.2■■■■□ 3.39
TSFM-208ENST00000543727 MYO15BQ96JP2 1530 aa36.18■■■■□ 3.38
TSFM-208ENST00000543727 DCAF1Q9Y4B6 1507 aa36.04■■■■□ 3.36
TSFM-208ENST00000543727 DCAF8L2P0C7V8 631 aa35.92■■■■□ 3.34
TSFM-208ENST00000543727 UNC13AQ9UPW8 1703 aa35.5■■■■□ 3.27
TSFM-208ENST00000543727 SCRIBQ14160 1630 aa35.12■■■■□ 3.21
TSFM-208ENST00000543727 BICRAQ9NZM4 1560 aa35.11■■■■□ 3.21
TSFM-208ENST00000543727 SHROOM4Q9ULL8 1493 aa34.96■■■■□ 3.19
TSFM-208ENST00000543727 PABPN1Q86U42 306 aaKnown RBP eCLIP34.89■■■■□ 3.18
TSFM-208ENST00000543727 EIF4G1Q04637 1599 aaKnown RBP34.19■■■■□ 3.06
TSFM-208ENST00000543727 DNAJC5BQ9UF47 199 aa34.13■■■■□ 3.05
TSFM-208ENST00000543727 CC2D2AQ9P2K1 1620 aa34.01■■■■□ 3.04
TSFM-208ENST00000543727 CECR2Q9BXF3 1484 aa33.71■■■□□ 2.99
TSFM-208ENST00000543727 BAZ1AQ9NRL2 1556 aaPredicted RBP33.68■■■□□ 2.98
TSFM-208ENST00000543727 SMARCA4P51532 1647 aa33.68■■■□□ 2.98
TSFM-208ENST00000543727 SMARCA2P51531 1590 aa33.48■■■□□ 2.95
TSFM-208ENST00000543727 PEG3Q9GZU2 1588 aa33.43■■■□□ 2.94
TSFM-208ENST00000543727 NCAPD3P42695 1498 aa33.41■■■□□ 2.94
TSFM-208ENST00000543727 ATAD2BQ9ULI0 1458 aa33.4■■■□□ 2.94
TSFM-208ENST00000543727 MROH2BQ7Z745 1585 aa33.37■■■□□ 2.93
TSFM-208ENST00000543727 HMGXB3Q12766 1538 aa33.34■■■□□ 2.93
TSFM-208ENST00000543727 BAZ1BQ9UIG0 1483 aaKnown RBP33.16■■■□□ 2.9
TSFM-208ENST00000543727 WIZO95785 1651 aa33.06■■■□□ 2.88
TSFM-208ENST00000543727 RSF1Q96T23 1441 aaPredicted RBP33.02■■■□□ 2.88
TSFM-208ENST00000543727 TOP2AP11388 1531 aaKnown RBP32.78■■■□□ 2.84
TSFM-208ENST00000543727 LAMC3Q9Y6N6 1575 aa32.59■■■□□ 2.81
TSFM-208ENST00000543727 NESP48681 1621 aa32.44■■■□□ 2.78
TSFM-208ENST00000543727 CADPSQ9ULU8 1353 aa32.39■■■□□ 2.78
TSFM-208ENST00000543727 ERCC6Q03468 1493 aa32.35■■■□□ 2.77
TSFM-208ENST00000543727 PDS5BQ9NTI5 1447 aa32.29■■■□□ 2.76
TSFM-208ENST00000543727 CCDC88BA6NC98 1476 aa32.29■■■□□ 2.76
TSFM-208ENST00000543727 CFTRP13569 1480 aa32.27■■■□□ 2.76
TSFM-208ENST00000543727 PRDM2Q13029 1718 aa32.26■■■□□ 2.75
TSFM-208ENST00000543727 KIF21AQ7Z4S6 1674 aa32.22■■■□□ 2.75
TSFM-208ENST00000543727 SUPT5HO00267 1087 aaKnown RBP32.1■■■□□ 2.73
TSFM-208ENST00000543727 THOC2Q8NI27 1593 aaKnown RBP32.1■■■□□ 2.73
TSFM-208ENST00000543727 CUX2O14529 1486 aa32.08■■■□□ 2.73
TSFM-208ENST00000543727 FANCD2Q9BXW9 1451 aa32.03■■■□□ 2.72
TSFM-208ENST00000543727 CEP164Q9UPV0 1460 aa32.03■■■□□ 2.72
TSFM-208ENST00000543727 MRC2Q9UBG0 1479 aa31.95■■■□□ 2.7
TSFM-208ENST00000543727 WDR62O43379 1518 aa31.89■■■□□ 2.7
TSFM-208ENST00000543727 URB2Q14146 1524 aaKnown RBP31.68■■■□□ 2.66
TSFM-208ENST00000543727 ABCC8Q09428 1581 aa31.66■■■□□ 2.66
TSFM-208ENST00000543727 DNMBPQ6XZF7 1577 aa31.58■■■□□ 2.65
TSFM-208ENST00000543727 TOPBP1Q92547 1522 aa31.54■■■□□ 2.64
TSFM-208ENST00000543727 IFT140Q96RY7 1462 aa31.35■■■□□ 2.61
TSFM-208ENST00000543727 CUX1P39880 1505 aa31.33■■■□□ 2.61
TSFM-208ENST00000543727 POLA1P09884 1462 aaPredicted RBP31.27■■■□□ 2.6
TSFM-208ENST00000543727 TARBP1Q13395 1621 aaKnown RBP31.24■■■□□ 2.59
TSFM-208ENST00000543727 BIVM-ERCC5R4GMW8 1640 aa31.21■■■□□ 2.59
TSFM-208ENST00000543727 FGD5Q6ZNL6 1462 aa31.21■■■□□ 2.59
TSFM-208ENST00000543727 TOP2BQ02880 1626 aa31.18■■■□□ 2.58
TSFM-208ENST00000543727 WRNQ14191 1432 aaPredicted RBP eCLIP31.17■■■□□ 2.58
TSFM-208ENST00000543727 WDR97A6NE52 1622 aa31.16■■■□□ 2.58
TSFM-208ENST00000543727 EIF4G3O43432 1585 aaKnown RBP31.1■■■□□ 2.57
TSFM-208ENST00000543727 SOGA1O94964 1423 aa31.1■■■□□ 2.57
TSFM-208ENST00000543727 SYNJ1O43426 1573 aa31.09■■■□□ 2.57
TSFM-208ENST00000543727 ZNF608Q9ULD9 1512 aaPredicted RBP31.08■■■□□ 2.57
TSFM-208ENST00000543727 RAD54L2Q9Y4B4 1467 aa31.04■■■□□ 2.56
TSFM-208ENST00000543727 ABCA10Q8WWZ4 1543 aa30.97■■■□□ 2.55
TSFM-208ENST00000543727 AQRO60306 1485 aaKnown RBP eCLIP30.89■■■□□ 2.541e-6■■■■■ 37.7
TSFM-208ENST00000543727 ABCA5Q8WWZ7 1642 aa30.87■■■□□ 2.53
TSFM-208ENST00000543727 PBRM1Q86U86 1689 aa30.84■■■□□ 2.53
TSFM-208ENST00000543727 TDRD9Q8NDG6 1382 aaKnown RBP30.83■■■□□ 2.53
TSFM-208ENST00000543727 GRIN2BQ13224 1484 aa30.8■■■□□ 2.52
TSFM-208ENST00000543727 GAPVD1Q14C86 1478 aa30.79■■■□□ 2.52
TSFM-208ENST00000543727 DNAJC5Q9H3Z4 198 aa30.79■■■□□ 2.52
TSFM-208ENST00000543727 MAGI1Q96QZ7 1491 aaPredicted RBP30.76■■■□□ 2.51
TSFM-208ENST00000543727 CHD1O14646 1710 aa30.71■■■□□ 2.51
TSFM-208ENST00000543727 SNAPC4Q5SXM2 1469 aa30.69■■■□□ 2.5
TSFM-208ENST00000543727 ERICH3Q5RHP9 1530 aa30.64■■■□□ 2.5
TSFM-208ENST00000543727 OSCARQ8IYS5 282 aa30.62■■■□□ 2.49
TSFM-208ENST00000543727 SYNJ2O15056 1496 aa30.6■■■□□ 2.49
TSFM-208ENST00000543727 ADAMTS12P58397 1594 aa30.55■■■□□ 2.48
TSFM-208ENST00000543727 KIF27Q86VH2 1401 aa30.54■■■□□ 2.48
TSFM-208ENST00000543727 FHAD1B1AJZ9 1412 aa30.46■■■□□ 2.47
TSFM-208ENST00000543727 CHMP7Q8WUX9 453 aaPredicted RBP30.45■■■□□ 2.47
TSFM-208ENST00000543727 CUL7Q14999 1698 aa30.44■■■□□ 2.46
TSFM-208ENST00000543727 FBLN2P98095 1184 aa30.44■■■□□ 2.46
TSFM-208ENST00000543727 GRIN2AQ12879 1464 aa30.4■■■□□ 2.46
TSFM-208ENST00000543727 TRIM41Q8WV44 630 aa30.4■■■□□ 2.46
TSFM-208ENST00000543727 CLASP1Q7Z460 1538 aa30.36■■■□□ 2.45
TSFM-208ENST00000543727 IGF1RP08069 1367 aa30.31■■■□□ 2.44
TSFM-208ENST00000543727 NUP160Q12769 1436 aa30.27■■■□□ 2.44
TSFM-208ENST00000543727 CEP170Q5SW79 1584 aa30.24■■■□□ 2.43
TSFM-208ENST00000543727 RIMBP3CA6NJZ7 1639 aa30.21■■■□□ 2.43
TSFM-208ENST00000543727 RIMBP3BA6NNM3 1639 aa30.21■■■□□ 2.43
TSFM-208ENST00000543727 RIMBP3Q9UFD9 1639 aa30.21■■■□□ 2.43
TSFM-208ENST00000543727 ARHGEF11O15085 1522 aa30.19■■■□□ 2.42
TSFM-208ENST00000543727 CARMIL1Q5VZK9 1371 aa30.15■■■□□ 2.42
TSFM-208ENST00000543727 RUSC2Q8N2Y8 1516 aa30.14■■■□□ 2.42
TSFM-208ENST00000543727 EEA1Q15075 1411 aa30.11■■■□□ 2.41
TSFM-208ENST00000543727 SHROOM2Q13796 1616 aa30.11■■■□□ 2.41
TSFM-208ENST00000543727 CHIC1Q5VXU3 224 aa30.06■■■□□ 2.4
TSFM-208ENST00000543727 RAPGEF2Q9Y4G8 1499 aa30.06■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms