RNA–Protein interactions for RNA: ENST00000543254.1

KLHL42-204, Transcript of kelch like family member 42, humanhuman

TSL 2

Gene KLHL42, Length 772 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL42-204ENST00000543254 NISCHQ9Y2I1 1504 aa30.04■■■□□ 2.4
KLHL42-204ENST00000543254 CCDC180Q9P1Z9 1646 aa26.58■■□□□ 1.85
KLHL42-204ENST00000543254 ABCC9O60706 1549 aa26.04■■□□□ 1.76
KLHL42-204ENST00000543254 DCAF8L2P0C7V8 631 aa25.27■■□□□ 1.64
KLHL42-204ENST00000543254 RB1CC1Q8TDY2 1594 aa25.06■■□□□ 1.6
KLHL42-204ENST00000543254 NACADO15069 1562 aa25.05■■□□□ 1.6
KLHL42-204ENST00000543254 ZCCHC6Q5VYS8 1495 aaKnown RBP25.03■■□□□ 1.6
KLHL42-204ENST00000543254 MYO15BQ96JP2 1530 aa24.9■■□□□ 1.58
KLHL42-204ENST00000543254 DCAF1Q9Y4B6 1507 aa24.83■■□□□ 1.57
KLHL42-204ENST00000543254 PABPN1Q86U42 306 aaKnown RBP eCLIP24.41■■□□□ 1.5
KLHL42-204ENST00000543254 SCRIBQ14160 1630 aa24.35■■□□□ 1.49
KLHL42-204ENST00000543254 UNC13AQ9UPW8 1703 aa24.3■■□□□ 1.48
KLHL42-204ENST00000543254 BICRAQ9NZM4 1560 aa24.19■■□□□ 1.46
KLHL42-204ENST00000543254 SHROOM4Q9ULL8 1493 aa24.05■■□□□ 1.44
KLHL42-204ENST00000543254 DNAJC5BQ9UF47 199 aa23.76■■□□□ 1.39
KLHL42-204ENST00000543254 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
KLHL42-204ENST00000543254 CC2D2AQ9P2K1 1620 aa23.48■■□□□ 1.35
KLHL42-204ENST00000543254 CECR2Q9BXF3 1484 aa23.39■■□□□ 1.34
KLHL42-204ENST00000543254 BAZ1AQ9NRL2 1556 aaPredicted RBP23.3■■□□□ 1.32
KLHL42-204ENST00000543254 SMARCA4P51532 1647 aa23.26■■□□□ 1.31
KLHL42-204ENST00000543254 ATAD2BQ9ULI0 1458 aa23.15■■□□□ 1.3
KLHL42-204ENST00000543254 MROH2BQ7Z745 1585 aa23.14■■□□□ 1.3
KLHL42-204ENST00000543254 SMARCA2P51531 1590 aa23.14■■□□□ 1.29
KLHL42-204ENST00000543254 NCAPD3P42695 1498 aa23.11■■□□□ 1.29
KLHL42-204ENST00000543254 BAZ1BQ9UIG0 1483 aaKnown RBP23.01■■□□□ 1.27
KLHL42-204ENST00000543254 PEG3Q9GZU2 1588 aa23■■□□□ 1.27
KLHL42-204ENST00000543254 HMGXB3Q12766 1538 aa22.98■■□□□ 1.27
KLHL42-204ENST00000543254 RSF1Q96T23 1441 aaPredicted RBP22.96■■□□□ 1.27
KLHL42-204ENST00000543254 WIZO95785 1651 aa22.87■■□□□ 1.25
KLHL42-204ENST00000543254 TOP2AP11388 1531 aaKnown RBP22.68■■□□□ 1.22
KLHL42-204ENST00000543254 SUPT5HO00267 1087 aaKnown RBP22.61■■□□□ 1.21
KLHL42-204ENST00000543254 NESP48681 1621 aa22.52■■□□□ 1.2
KLHL42-204ENST00000543254 ERCC6Q03468 1493 aa22.51■■□□□ 1.19
KLHL42-204ENST00000543254 CADPSQ9ULU8 1353 aa22.5■■□□□ 1.19
KLHL42-204ENST00000543254 LAMC3Q9Y6N6 1575 aa22.47■■□□□ 1.19
KLHL42-204ENST00000543254 CCDC88BA6NC98 1476 aa22.43■■□□□ 1.18
KLHL42-204ENST00000543254 PDS5BQ9NTI5 1447 aa22.41■■□□□ 1.18
KLHL42-204ENST00000543254 CFTRP13569 1480 aa22.34■■□□□ 1.17
KLHL42-204ENST00000543254 FANCD2Q9BXW9 1451 aa22.23■■□□□ 1.15
KLHL42-204ENST00000543254 CEP164Q9UPV0 1460 aa22.2■■□□□ 1.14
KLHL42-204ENST00000543254 KIF21AQ7Z4S6 1674 aa22.17■■□□□ 1.14
KLHL42-204ENST00000543254 CUX2O14529 1486 aa22.15■■□□□ 1.14
KLHL42-204ENST00000543254 MRC2Q9UBG0 1479 aa22.14■■□□□ 1.13
KLHL42-204ENST00000543254 THOC2Q8NI27 1593 aaKnown RBP22.08■■□□□ 1.13
KLHL42-204ENST00000543254 PRDM2Q13029 1718 aa22.03■■□□□ 1.12
KLHL42-204ENST00000543254 WDR62O43379 1518 aa22■■□□□ 1.11
KLHL42-204ENST00000543254 URB2Q14146 1524 aaKnown RBP21.96■■□□□ 1.11
KLHL42-204ENST00000543254 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
KLHL42-204ENST00000543254 TOPBP1Q92547 1522 aa21.85■■□□□ 1.09
KLHL42-204ENST00000543254 DNMBPQ6XZF7 1577 aa21.82■■□□□ 1.08
KLHL42-204ENST00000543254 IFT140Q96RY7 1462 aa21.74■■□□□ 1.07
KLHL42-204ENST00000543254 CUX1P39880 1505 aa21.71■■□□□ 1.07
KLHL42-204ENST00000543254 WRNQ14191 1432 aaPredicted RBP eCLIP21.69■■□□□ 1.06
KLHL42-204ENST00000543254 POLA1P09884 1462 aaPredicted RBP21.68■■□□□ 1.06
KLHL42-204ENST00000543254 FGD5Q6ZNL6 1462 aa21.65■■□□□ 1.06
KLHL42-204ENST00000543254 SOGA1O94964 1423 aa21.65■■□□□ 1.06
KLHL42-204ENST00000543254 RAD54L2Q9Y4B4 1467 aa21.6■■□□□ 1.05
KLHL42-204ENST00000543254 ZNF608Q9ULD9 1512 aaPredicted RBP21.59■■□□□ 1.05
KLHL42-204ENST00000543254 TOP2BQ02880 1626 aa21.54■■□□□ 1.04
KLHL42-204ENST00000543254 TARBP1Q13395 1621 aaKnown RBP21.54■■□□□ 1.04
KLHL42-204ENST00000543254 SYNJ1O43426 1573 aa21.53■■□□□ 1.04
KLHL42-204ENST00000543254 TDRD9Q8NDG6 1382 aaKnown RBP21.52■■□□□ 1.04
KLHL42-204ENST00000543254 AQRO60306 1485 aaKnown RBP eCLIP21.52■■□□□ 1.03
KLHL42-204ENST00000543254 BIVM-ERCC5R4GMW8 1640 aa21.49■■□□□ 1.03
KLHL42-204ENST00000543254 EIF4G3O43432 1585 aaKnown RBP21.47■■□□□ 1.03
KLHL42-204ENST00000543254 ABCA10Q8WWZ4 1543 aa21.44■■□□□ 1.02
KLHL42-204ENST00000543254 WDR97A6NE52 1622 aa21.41■■□□□ 1.02
KLHL42-204ENST00000543254 GAPVD1Q14C86 1478 aa21.39■■□□□ 1.01
KLHL42-204ENST00000543254 GRIN2BQ13224 1484 aa21.38■■□□□ 1.01
KLHL42-204ENST00000543254 FBLN2P98095 1184 aa21.37■■□□□ 1.01
KLHL42-204ENST00000543254 DNAJC5Q9H3Z4 198 aa21.37■■□□□ 1.01
KLHL42-204ENST00000543254 TRIM41Q8WV44 630 aa21.35■■□□□ 1.01
KLHL42-204ENST00000543254 OSCARQ8IYS5 282 aa21.34■■□□□ 1.01
KLHL42-204ENST00000543254 SNAPC4Q5SXM2 1469 aa21.32■■□□□ 1
KLHL42-204ENST00000543254 CHMP7Q8WUX9 453 aaPredicted RBP21.3■■□□□ 1
KLHL42-204ENST00000543254 MAGI1Q96QZ7 1491 aaPredicted RBP21.29■■□□□ 1
KLHL42-204ENST00000543254 ABCA5Q8WWZ7 1642 aa21.29■■□□□ 1
KLHL42-204ENST00000543254 KIF27Q86VH2 1401 aa21.25■□□□□ 0.99
KLHL42-204ENST00000543254 PBRM1Q86U86 1689 aa21.21■□□□□ 0.99
KLHL42-204ENST00000543254 SYNJ2O15056 1496 aa21.2■□□□□ 0.98
KLHL42-204ENST00000543254 ERICH3Q5RHP9 1530 aa21.19■□□□□ 0.98
KLHL42-204ENST00000543254 FHAD1B1AJZ9 1412 aa21.16■□□□□ 0.98
KLHL42-204ENST00000543254 CHD1O14646 1710 aa21.12■□□□□ 0.97
KLHL42-204ENST00000543254 IGF1RP08069 1367 aa21.11■□□□□ 0.97
KLHL42-204ENST00000543254 ADAMTS12P58397 1594 aa21.1■□□□□ 0.97
KLHL42-204ENST00000543254 CHIC1Q5VXU3 224 aa21.08■□□□□ 0.97
KLHL42-204ENST00000543254 GRIN2AQ12879 1464 aa21.07■□□□□ 0.96
KLHL42-204ENST00000543254 CARMIL1Q5VZK9 1371 aa21.02■□□□□ 0.96
KLHL42-204ENST00000543254 RUSC2Q8N2Y8 1516 aa20.99■□□□□ 0.95
KLHL42-204ENST00000543254 CUL7Q14999 1698 aa20.99■□□□□ 0.95
KLHL42-204ENST00000543254 NUP160Q12769 1436 aa20.95■□□□□ 0.95
KLHL42-204ENST00000543254 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
KLHL42-204ENST00000543254 EEA1Q15075 1411 aa20.91■□□□□ 0.94
KLHL42-204ENST00000543254 CEP170Q5SW79 1584 aa20.91■□□□□ 0.94
KLHL42-204ENST00000543254 FAM9AQ8IZU1 332 aaPredicted RBP20.91■□□□□ 0.94
KLHL42-204ENST00000543254 CSRNP3Q8WYN3 585 aa20.9■□□□□ 0.94
KLHL42-204ENST00000543254 ARHGEF11O15085 1522 aa20.89■□□□□ 0.94
KLHL42-204ENST00000543254 RAPGEF2Q9Y4G8 1499 aa20.89■□□□□ 0.94
KLHL42-204ENST00000543254 RIMBP3CA6NJZ7 1639 aa20.84■□□□□ 0.93
KLHL42-204ENST00000543254 RIMBP3BA6NNM3 1639 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms