RNA–Protein interactions for RNA: ENST00000543048.5

TNFRSF1A-214, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-214ENST00000543048 AEBP2Q6ZN18 517 aaPredicted RBP24.05■■□□□ 1.44
TNFRSF1A-214ENST00000543048 NISCHQ9Y2I1 1504 aa23.78■■□□□ 1.4
TNFRSF1A-214ENST00000543048 CHIC1Q5VXU3 224 aa23.28■■□□□ 1.32
TNFRSF1A-214ENST00000543048 CCDC180Q9P1Z9 1646 aa21.21■□□□□ 0.99
TNFRSF1A-214ENST00000543048 ABCC9O60706 1549 aa20.88■□□□□ 0.93
TNFRSF1A-214ENST00000543048 PHF23Q9BUL5 403 aaPredicted RBP20.45■□□□□ 0.86
TNFRSF1A-214ENST00000543048 SENP3Q9H4L4 574 aaPredicted RBP20.44■□□□□ 0.86
TNFRSF1A-214ENST00000543048 RB1CC1Q8TDY2 1594 aa20.04■□□□□ 0.8
TNFRSF1A-214ENST00000543048 DCAF8L2P0C7V8 631 aa20.02■□□□□ 0.8
TNFRSF1A-214ENST00000543048 NACADO15069 1562 aa19.98■□□□□ 0.79
TNFRSF1A-214ENST00000543048 MYO15BQ96JP2 1530 aa19.79■□□□□ 0.76
TNFRSF1A-214ENST00000543048 ZCCHC6Q5VYS8 1495 aaKnown RBP19.73■□□□□ 0.75
TNFRSF1A-214ENST00000543048 DCAF1Q9Y4B6 1507 aa19.66■□□□□ 0.74
TNFRSF1A-214ENST00000543048 UNC13AQ9UPW8 1703 aa19.63■□□□□ 0.73
TNFRSF1A-214ENST00000543048 PABPN1Q86U42 306 aaKnown RBP eCLIP19.53■□□□□ 0.72
TNFRSF1A-214ENST00000543048 BICRAQ9NZM4 1560 aa19.42■□□□□ 0.7
TNFRSF1A-214ENST00000543048 DNAJC5BQ9UF47 199 aa19.36■□□□□ 0.69
TNFRSF1A-214ENST00000543048 SCRIBQ14160 1630 aa19.32■□□□□ 0.68
TNFRSF1A-214ENST00000543048 SHROOM4Q9ULL8 1493 aa19.17■□□□□ 0.66
TNFRSF1A-214ENST00000543048 FOXD1Q16676 465 aa18.99■□□□□ 0.63
TNFRSF1A-214ENST00000543048 EIF4G1Q04637 1599 aaKnown RBP18.92■□□□□ 0.62
TNFRSF1A-214ENST00000543048 CC2D2AQ9P2K1 1620 aa18.9■□□□□ 0.62
TNFRSF1A-214ENST00000543048 PLPPR3Q6T4P5 718 aa18.83■□□□□ 0.6
TNFRSF1A-214ENST00000543048 CECR2Q9BXF3 1484 aa18.78■□□□□ 0.6
TNFRSF1A-214ENST00000543048 SMARCA4P51532 1647 aa18.47■□□□□ 0.55
TNFRSF1A-214ENST00000543048 NCAPD3P42695 1498 aa18.44■□□□□ 0.54
TNFRSF1A-214ENST00000543048 BAZ1AQ9NRL2 1556 aaPredicted RBP18.42■□□□□ 0.54
TNFRSF1A-214ENST00000543048 ATAD2BQ9ULI0 1458 aa18.41■□□□□ 0.54
TNFRSF1A-214ENST00000543048 SMARCA2P51531 1590 aa18.39■□□□□ 0.53
TNFRSF1A-214ENST00000543048 MROH2BQ7Z745 1585 aa18.31■□□□□ 0.52
TNFRSF1A-214ENST00000543048 HMGXB3Q12766 1538 aa18.29■□□□□ 0.52
TNFRSF1A-214ENST00000543048 PEG3Q9GZU2 1588 aa18.29■□□□□ 0.52
TNFRSF1A-214ENST00000543048 BAZ1BQ9UIG0 1483 aaKnown RBP18.25■□□□□ 0.51
TNFRSF1A-214ENST00000543048 WIZO95785 1651 aa18.13■□□□□ 0.49
TNFRSF1A-214ENST00000543048 ADRA2BP18089 450 aa18.11■□□□□ 0.49
TNFRSF1A-214ENST00000543048 PPP6R1Q9UPN7 881 aa18.11■□□□□ 0.49
TNFRSF1A-214ENST00000543048 RSF1Q96T23 1441 aaPredicted RBP18.06■□□□□ 0.48
TNFRSF1A-214ENST00000543048 NESP48681 1621 aa18.03■□□□□ 0.48
TNFRSF1A-214ENST00000543048 ERCC6Q03468 1493 aa18.01■□□□□ 0.47
TNFRSF1A-214ENST00000543048 LAMC3Q9Y6N6 1575 aa17.97■□□□□ 0.47
TNFRSF1A-214ENST00000543048 CADPSQ9ULU8 1353 aa17.91■□□□□ 0.46
TNFRSF1A-214ENST00000543048 PIAS4Q8N2W9 510 aaPredicted RBP17.9■□□□□ 0.46
TNFRSF1A-214ENST00000543048 TOP2AP11388 1531 aaKnown RBP17.89■□□□□ 0.45
TNFRSF1A-214ENST00000543048 PDS5BQ9NTI5 1447 aa17.88■□□□□ 0.45
TNFRSF1A-214ENST00000543048 CUX2O14529 1486 aa17.88■□□□□ 0.45
TNFRSF1A-214ENST00000543048 KIF21AQ7Z4S6 1674 aa17.83■□□□□ 0.45
TNFRSF1A-214ENST00000543048 THOC2Q8NI27 1593 aaKnown RBP17.76■□□□□ 0.43
TNFRSF1A-214ENST00000543048 CFTRP13569 1480 aa17.75■□□□□ 0.43
TNFRSF1A-214ENST00000543048 CCDC88BA6NC98 1476 aa17.72■□□□□ 0.43
TNFRSF1A-214ENST00000543048 FANCD2Q9BXW9 1451 aa17.67■□□□□ 0.42
TNFRSF1A-214ENST00000543048 MRC2Q9UBG0 1479 aa17.66■□□□□ 0.42
TNFRSF1A-214ENST00000543048 CEP164Q9UPV0 1460 aa17.65■□□□□ 0.42
TNFRSF1A-214ENST00000543048 PRDM2Q13029 1718 aa17.65■□□□□ 0.42
TNFRSF1A-214ENST00000543048 MSH5O43196 834 aa17.6■□□□□ 0.41
TNFRSF1A-214ENST00000543048 WDR62O43379 1518 aa17.6■□□□□ 0.41
TNFRSF1A-214ENST00000543048 DNAJC5Q9H3Z4 198 aa17.58■□□□□ 0.4
TNFRSF1A-214ENST00000543048 SUPT5HO00267 1087 aaKnown RBP17.55■□□□□ 0.4
TNFRSF1A-214ENST00000543048 URB2Q14146 1524 aaKnown RBP17.5■□□□□ 0.39
TNFRSF1A-214ENST00000543048 ABCC8Q09428 1581 aa17.4■□□□□ 0.38
TNFRSF1A-214ENST00000543048 TOPBP1Q92547 1522 aa17.37■□□□□ 0.37
TNFRSF1A-214ENST00000543048 DNMBPQ6XZF7 1577 aa17.34■□□□□ 0.37
TNFRSF1A-214ENST00000543048 IFT140Q96RY7 1462 aa17.31■□□□□ 0.36
TNFRSF1A-214ENST00000543048 ZNF608Q9ULD9 1512 aaPredicted RBP17.23■□□□□ 0.35
TNFRSF1A-214ENST00000543048 TARBP1Q13395 1621 aaKnown RBP17.21■□□□□ 0.35
TNFRSF1A-214ENST00000543048 POLA1P09884 1462 aaPredicted RBP17.2■□□□□ 0.34
TNFRSF1A-214ENST00000543048 OSCARQ8IYS5 282 aa17.19■□□□□ 0.34
TNFRSF1A-214ENST00000543048 CUX1P39880 1505 aa17.18■□□□□ 0.34
TNFRSF1A-214ENST00000543048 SOGA1O94964 1423 aa17.18■□□□□ 0.34
TNFRSF1A-214ENST00000543048 AQRO60306 1485 aaKnown RBP eCLIP17.15■□□□□ 0.341e-6■■■■■ 32
TNFRSF1A-214ENST00000543048 RAD54L2Q9Y4B4 1467 aa17.15■□□□□ 0.34
TNFRSF1A-214ENST00000543048 FGD5Q6ZNL6 1462 aa17.14■□□□□ 0.33
TNFRSF1A-214ENST00000543048 EIF4G3O43432 1585 aaKnown RBP17.14■□□□□ 0.33
TNFRSF1A-214ENST00000543048 TDRD9Q8NDG6 1382 aaKnown RBP17.09■□□□□ 0.33
TNFRSF1A-214ENST00000543048 WDR97A6NE52 1622 aa17.05■□□□□ 0.32
TNFRSF1A-214ENST00000543048 WRNQ14191 1432 aaPredicted RBP eCLIP17.02■□□□□ 0.31
TNFRSF1A-214ENST00000543048 CHD1O14646 1710 aa17.01■□□□□ 0.31
TNFRSF1A-214ENST00000543048 BIVM-ERCC5R4GMW8 1640 aa17.01■□□□□ 0.31
TNFRSF1A-214ENST00000543048 FBLN2P98095 1184 aa17.01■□□□□ 0.31
TNFRSF1A-214ENST00000543048 TOP2BQ02880 1626 aa17■□□□□ 0.31
TNFRSF1A-214ENST00000543048 ABCA10Q8WWZ4 1543 aa16.98■□□□□ 0.31
TNFRSF1A-214ENST00000543048 SYNJ1O43426 1573 aa16.98■□□□□ 0.31
TNFRSF1A-214ENST00000543048 GRIN2BQ13224 1484 aa16.97■□□□□ 0.31
TNFRSF1A-214ENST00000543048 GAPVD1Q14C86 1478 aa16.96■□□□□ 0.31
TNFRSF1A-214ENST00000543048 CHMP7Q8WUX9 453 aaPredicted RBP16.95■□□□□ 0.3
TNFRSF1A-214ENST00000543048 SNAPC4Q5SXM2 1469 aa16.94■□□□□ 0.3
TNFRSF1A-214ENST00000543048 PBRM1Q86U86 1689 aa16.94■□□□□ 0.3
TNFRSF1A-214ENST00000543048 MAGI1Q96QZ7 1491 aaPredicted RBP16.93■□□□□ 0.3
TNFRSF1A-214ENST00000543048 TRIM41Q8WV44 630 aa16.92■□□□□ 0.3
TNFRSF1A-214ENST00000543048 ABCA5Q8WWZ7 1642 aa16.91■□□□□ 0.3
TNFRSF1A-214ENST00000543048 RIMBP3CA6NJZ7 1639 aa16.87■□□□□ 0.29
TNFRSF1A-214ENST00000543048 RIMBP3BA6NNM3 1639 aa16.87■□□□□ 0.29
TNFRSF1A-214ENST00000543048 RIMBP3Q9UFD9 1639 aa16.87■□□□□ 0.29
TNFRSF1A-214ENST00000543048 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
TNFRSF1A-214ENST00000543048 ARHGEF11O15085 1522 aa16.82■□□□□ 0.28
TNFRSF1A-214ENST00000543048 ERICH3Q5RHP9 1530 aa16.78■□□□□ 0.28
TNFRSF1A-214ENST00000543048 CLASP1Q7Z460 1538 aa16.77■□□□□ 0.28
TNFRSF1A-214ENST00000543048 CYB5RLQ6IPT4 315 aa16.76■□□□□ 0.27
TNFRSF1A-214ENST00000543048 FHAD1B1AJZ9 1412 aa16.75■□□□□ 0.27
TNFRSF1A-214ENST00000543048 ADAMTS12P58397 1594 aa16.74■□□□□ 0.27
TNFRSF1A-214ENST00000543048 GRIN2AQ12879 1464 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms