RNA–Protein interactions for RNA: ENST00000542772.1

ABCF1-207, Transcript of ATP binding cassette subfamily F member 1, humanhuman

TSL 3

Gene ABCF1, Length 223 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-207ENST00000542772 NISCHQ9Y2I1 1504 aa13.93□□□□□ -0.18
ABCF1-207ENST00000542772 CCDC180Q9P1Z9 1646 aa12.26□□□□□ -0.45
ABCF1-207ENST00000542772 ABCC9O60706 1549 aa11.78□□□□□ -0.52
ABCF1-207ENST00000542772 ZCCHC6Q5VYS8 1495 aaKnown RBP11.62□□□□□ -0.55
ABCF1-207ENST00000542772 DCAF1Q9Y4B6 1507 aa11.56□□□□□ -0.56
ABCF1-207ENST00000542772 MYO15BQ96JP2 1530 aa11.55□□□□□ -0.56
ABCF1-207ENST00000542772 DCAF8L2P0C7V8 631 aa11.52□□□□□ -0.57
ABCF1-207ENST00000542772 NACADO15069 1562 aa11.51□□□□□ -0.57
ABCF1-207ENST00000542772 RB1CC1Q8TDY2 1594 aa11.45□□□□□ -0.58
ABCF1-207ENST00000542772 UNC13AQ9UPW8 1703 aa11.19□□□□□ -0.62
ABCF1-207ENST00000542772 SCRIBQ14160 1630 aa11.14□□□□□ -0.63
ABCF1-207ENST00000542772 BICRAQ9NZM4 1560 aa11.11□□□□□ -0.63
ABCF1-207ENST00000542772 PABPN1Q86U42 306 aaKnown RBP eCLIP11.07□□□□□ -0.64
ABCF1-207ENST00000542772 SHROOM4Q9ULL8 1493 aa11.03□□□□□ -0.64
ABCF1-207ENST00000542772 CECR2Q9BXF3 1484 aa10.82□□□□□ -0.68
ABCF1-207ENST00000542772 EIF4G1Q04637 1599 aaKnown RBP10.78□□□□□ -0.68
ABCF1-207ENST00000542772 BAZ1AQ9NRL2 1556 aaPredicted RBP10.76□□□□□ -0.69
ABCF1-207ENST00000542772 DNAJC5BQ9UF47 199 aa10.73□□□□□ -0.69
ABCF1-207ENST00000542772 SMARCA4P51532 1647 aa10.73□□□□□ -0.69
ABCF1-207ENST00000542772 MROH2BQ7Z745 1585 aa10.72□□□□□ -0.69
ABCF1-207ENST00000542772 RSF1Q96T23 1441 aaPredicted RBP10.69□□□□□ -0.7
ABCF1-207ENST00000542772 CC2D2AQ9P2K1 1620 aa10.69□□□□□ -0.7
ABCF1-207ENST00000542772 PEG3Q9GZU2 1588 aa10.67□□□□□ -0.7
ABCF1-207ENST00000542772 NCAPD3P42695 1498 aa10.66□□□□□ -0.7
ABCF1-207ENST00000542772 ATAD2BQ9ULI0 1458 aa10.66□□□□□ -0.7
ABCF1-207ENST00000542772 SMARCA2P51531 1590 aa10.63□□□□□ -0.71
ABCF1-207ENST00000542772 WIZO95785 1651 aa10.6□□□□□ -0.71
ABCF1-207ENST00000542772 HMGXB3Q12766 1538 aa10.56□□□□□ -0.72
ABCF1-207ENST00000542772 SUPT5HO00267 1087 aaKnown RBP10.53□□□□□ -0.72
ABCF1-207ENST00000542772 BAZ1BQ9UIG0 1483 aaKnown RBP10.53□□□□□ -0.72
ABCF1-207ENST00000542772 TOP2AP11388 1531 aaKnown RBP10.49□□□□□ -0.73
ABCF1-207ENST00000542772 CCDC88BA6NC98 1476 aa10.41□□□□□ -0.74
ABCF1-207ENST00000542772 CADPSQ9ULU8 1353 aa10.34□□□□□ -0.75
ABCF1-207ENST00000542772 CFTRP13569 1480 aa10.31□□□□□ -0.76
ABCF1-207ENST00000542772 LAMC3Q9Y6N6 1575 aa10.3□□□□□ -0.76
ABCF1-207ENST00000542772 NESP48681 1621 aa10.26□□□□□ -0.77
ABCF1-207ENST00000542772 PDS5BQ9NTI5 1447 aa10.23□□□□□ -0.77
ABCF1-207ENST00000542772 PRDM2Q13029 1718 aa10.19□□□□□ -0.78
ABCF1-207ENST00000542772 FANCD2Q9BXW9 1451 aa10.17□□□□□ -0.78
ABCF1-207ENST00000542772 KIF21AQ7Z4S6 1674 aa10.13□□□□□ -0.79
ABCF1-207ENST00000542772 CEP164Q9UPV0 1460 aa10.12□□□□□ -0.79
ABCF1-207ENST00000542772 ERCC6Q03468 1493 aa10.1□□□□□ -0.79
ABCF1-207ENST00000542772 ABCC8Q09428 1581 aa10.09□□□□□ -0.79
ABCF1-207ENST00000542772 MRC2Q9UBG0 1479 aa10.07□□□□□ -0.8
ABCF1-207ENST00000542772 URB2Q14146 1524 aaKnown RBP10.07□□□□□ -0.8
ABCF1-207ENST00000542772 THOC2Q8NI27 1593 aaKnown RBP10.05□□□□□ -0.8
ABCF1-207ENST00000542772 WDR62O43379 1518 aa10.05□□□□□ -0.8
ABCF1-207ENST00000542772 WRNQ14191 1432 aaPredicted RBP eCLIP10.05□□□□□ -0.8
ABCF1-207ENST00000542772 TOPBP1Q92547 1522 aa10.04□□□□□ -0.8
ABCF1-207ENST00000542772 DNMBPQ6XZF7 1577 aa10.03□□□□□ -0.8
ABCF1-207ENST00000542772 CUX1P39880 1505 aa10.02□□□□□ -0.8
ABCF1-207ENST00000542772 CHIC1Q5VXU3 224 aa10.01□□□□□ -0.81
ABCF1-207ENST00000542772 TOP2BQ02880 1626 aa10□□□□□ -0.81
ABCF1-207ENST00000542772 BIVM-ERCC5R4GMW8 1640 aa10□□□□□ -0.81
ABCF1-207ENST00000542772 CUX2O14529 1486 aa9.99□□□□□ -0.81
ABCF1-207ENST00000542772 SYNJ1O43426 1573 aa9.98□□□□□ -0.81
ABCF1-207ENST00000542772 TRIM41Q8WV44 630 aa9.97□□□□□ -0.81
ABCF1-207ENST00000542772 POLA1P09884 1462 aaPredicted RBP9.97□□□□□ -0.81
ABCF1-207ENST00000542772 SOGA1O94964 1423 aa9.96□□□□□ -0.82
ABCF1-207ENST00000542772 FGD5Q6ZNL6 1462 aa9.95□□□□□ -0.82
ABCF1-207ENST00000542772 IFT140Q96RY7 1462 aa9.93□□□□□ -0.82
ABCF1-207ENST00000542772 TARBP1Q13395 1621 aaKnown RBP9.93□□□□□ -0.82
ABCF1-207ENST00000542772 RAD54L2Q9Y4B4 1467 aa9.91□□□□□ -0.82
ABCF1-207ENST00000542772 ABCA10Q8WWZ4 1543 aa9.9□□□□□ -0.82
ABCF1-207ENST00000542772 WDR97A6NE52 1622 aa9.86□□□□□ -0.83
ABCF1-207ENST00000542772 TDRD9Q8NDG6 1382 aaKnown RBP9.86□□□□□ -0.83
ABCF1-207ENST00000542772 ZNF608Q9ULD9 1512 aaPredicted RBP9.85□□□□□ -0.83
ABCF1-207ENST00000542772 AQRO60306 1485 aaKnown RBP eCLIP9.84□□□□□ -0.83
ABCF1-207ENST00000542772 KIF27Q86VH2 1401 aa9.82□□□□□ -0.84
ABCF1-207ENST00000542772 IGF1RP08069 1367 aa9.82□□□□□ -0.84
ABCF1-207ENST00000542772 GAPVD1Q14C86 1478 aa9.82□□□□□ -0.84
ABCF1-207ENST00000542772 ABCA5Q8WWZ7 1642 aa9.82□□□□□ -0.84
ABCF1-207ENST00000542772 RUSC2Q8N2Y8 1516 aa9.82□□□□□ -0.84
ABCF1-207ENST00000542772 GRIN2BQ13224 1484 aa9.79□□□□□ -0.84
ABCF1-207ENST00000542772 CSRNP3Q8WYN3 585 aa9.79□□□□□ -0.84
ABCF1-207ENST00000542772 EEA1Q15075 1411 aa9.79□□□□□ -0.84
ABCF1-207ENST00000542772 EIF4G3O43432 1585 aaKnown RBP9.79□□□□□ -0.84
ABCF1-207ENST00000542772 ERICH3Q5RHP9 1530 aa9.78□□□□□ -0.84
ABCF1-207ENST00000542772 PBRM1Q86U86 1689 aa9.74□□□□□ -0.85
ABCF1-207ENST00000542772 MAGI1Q96QZ7 1491 aaPredicted RBP9.74□□□□□ -0.85
ABCF1-207ENST00000542772 CARMIL1Q5VZK9 1371 aa9.73□□□□□ -0.85
ABCF1-207ENST00000542772 FHAD1B1AJZ9 1412 aa9.73□□□□□ -0.85
ABCF1-207ENST00000542772 SNAPC4Q5SXM2 1469 aa9.72□□□□□ -0.85
ABCF1-207ENST00000542772 PRXQ9BXM0 1461 aa9.72□□□□□ -0.85
ABCF1-207ENST00000542772 FAM9AQ8IZU1 332 aaPredicted RBP9.7□□□□□ -0.86
ABCF1-207ENST00000542772 CHMP7Q8WUX9 453 aaPredicted RBP9.7□□□□□ -0.86
ABCF1-207ENST00000542772 SYNJ2O15056 1496 aa9.7□□□□□ -0.86
ABCF1-207ENST00000542772 CUL7Q14999 1698 aa9.7□□□□□ -0.86
ABCF1-207ENST00000542772 RAPGEF2Q9Y4G8 1499 aa9.68□□□□□ -0.86
ABCF1-207ENST00000542772 ADAMTS12P58397 1594 aa9.67□□□□□ -0.86
ABCF1-207ENST00000542772 FBLN2P98095 1184 aa9.66□□□□□ -0.86
ABCF1-207ENST00000542772 OSCARQ8IYS5 282 aa9.66□□□□□ -0.86
ABCF1-207ENST00000542772 GRIN2AQ12879 1464 aa9.66□□□□□ -0.86
ABCF1-207ENST00000542772 KIF21BO75037 1637 aa9.64□□□□□ -0.87
ABCF1-207ENST00000542772 CHD1O14646 1710 aa9.63□□□□□ -0.87
ABCF1-207ENST00000542772 NUP160Q12769 1436 aa9.63□□□□□ -0.87
ABCF1-207ENST00000542772 KIAA0586Q9BVV6 1533 aa9.6□□□□□ -0.87
ABCF1-207ENST00000542772 CEP170Q5SW79 1584 aa9.59□□□□□ -0.87
ABCF1-207ENST00000542772 LOC105371045A0A1W2PR82 267 aa9.59□□□□□ -0.87
ABCF1-207ENST00000542772 GOLGA3Q08378 1498 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms