RNA–Protein interactions for RNA: ENST00000541295.5

LMO3-225, Transcript of LIM domain only 3, humanhuman

TSL 2 BASIC

Gene LMO3, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-225ENST00000541295 NISCHQ9Y2I1 1504 aa11.84□□□□□ -0.51
LMO3-225ENST00000541295 MYT1Q01538 1121 aa11.48□□□□□ -0.57
LMO3-225ENST00000541295 SLC24A1O60721 1099 aa11.4□□□□□ -0.58
LMO3-225ENST00000541295 PELP1Q8IZL8 1130 aaKnown RBP11.38□□□□□ -0.59
LMO3-225ENST00000541295 TTBK1Q5TCY1 1321 aaPredicted RBP11.17□□□□□ -0.62
LMO3-225ENST00000541295 ERICH6Q7L0X2 663 aa10.83□□□□□ -0.67
LMO3-225ENST00000541295 PRKCSHP14314 528 aaPredicted RBP10.67□□□□□ -0.7
LMO3-225ENST00000541295 DAXXQ9UER7 740 aaPredicted RBP10.66□□□□□ -0.7
LMO3-225ENST00000541295 APLP2Q06481 763 aa10.56□□□□□ -0.72
LMO3-225ENST00000541295 AEBP2Q6ZN18 517 aaPredicted RBP10.31□□□□□ -0.76
LMO3-225ENST00000541295 CCDC180Q9P1Z9 1646 aa10.19□□□□□ -0.78
LMO3-225ENST00000541295 EIF5BO60841 1220 aaKnown RBP10.15□□□□□ -0.79
LMO3-225ENST00000541295 DCAF8L2P0C7V8 631 aa10.1□□□□□ -0.79
LMO3-225ENST00000541295 NCBP3Q53F19 620 aaKnown RBP10.09□□□□□ -0.79
LMO3-225ENST00000541295 BCL11AQ9H165 835 aa10.06□□□□□ -0.8
LMO3-225ENST00000541295 EHMT2Q96KQ7 1210 aa10.06□□□□□ -0.8
LMO3-225ENST00000541295 SHROOM4Q9ULL8 1493 aa10.03□□□□□ -0.8
LMO3-225ENST00000541295 RANGAP1P46060 587 aaPredicted RBP10.03□□□□□ -0.8
LMO3-225ENST00000541295 ZCCHC6Q5VYS8 1495 aaKnown RBP9.95□□□□□ -0.82
LMO3-225ENST00000541295 RTN4Q9NQC3 1192 aaKnown RBP9.89□□□□□ -0.83
LMO3-225ENST00000541295 ARXQ96QS3 562 aa9.87□□□□□ -0.83
LMO3-225ENST00000541295 PLPPR3Q6T4P5 718 aa9.86□□□□□ -0.83
LMO3-225ENST00000541295 ABCC9O60706 1549 aa9.81□□□□□ -0.84
LMO3-225ENST00000541295 CHIC1Q5VXU3 224 aa9.79□□□□□ -0.84
LMO3-225ENST00000541295 FAM9AQ8IZU1 332 aaPredicted RBP9.79□□□□□ -0.84
LMO3-225ENST00000541295 SUPT5HO00267 1087 aaKnown RBP9.69□□□□□ -0.86
LMO3-225ENST00000541295 CENPBP07199 599 aaPredicted RBP9.68□□□□□ -0.86
LMO3-225ENST00000541295 PLEKHG5O94827 1062 aa9.66□□□□□ -0.86
LMO3-225ENST00000541295 DCAF1Q9Y4B6 1507 aa9.66□□□□□ -0.86
LMO3-225ENST00000541295 AMER1Q5JTC6 1135 aaPredicted RBP9.65□□□□□ -0.86
LMO3-225ENST00000541295 TIMELESSQ9UNS1 1208 aa9.64□□□□□ -0.87
LMO3-225ENST00000541295 PODXL2Q9NZ53 605 aa9.63□□□□□ -0.87
LMO3-225ENST00000541295 HOMEZQ8IX15 550 aa9.61□□□□□ -0.87
LMO3-225ENST00000541295 KLHL34Q8N239 644 aa9.6□□□□□ -0.87
LMO3-225ENST00000541295 SCRIBQ14160 1630 aa9.59□□□□□ -0.87
LMO3-225ENST00000541295 TULP1O00294 542 aaPredicted RBP9.57□□□□□ -0.88
LMO3-225ENST00000541295 NACADO15069 1562 aa9.5□□□□□ -0.89
LMO3-225ENST00000541295 MYO15BQ96JP2 1530 aa9.48□□□□□ -0.89
LMO3-225ENST00000541295 UBE2Q2Q8WVN8 375 aa9.48□□□□□ -0.89
LMO3-225ENST00000541295 SCAF1Q9H7N4 1312 aaKnown RBP9.47□□□□□ -0.89
LMO3-225ENST00000541295 RB1CC1Q8TDY2 1594 aa9.45□□□□□ -0.9
LMO3-225ENST00000541295 HRCP23327 699 aa9.44□□□□□ -0.9
LMO3-225ENST00000541295 NEFLP07196 543 aa9.39□□□□□ -0.91
LMO3-225ENST00000541295 PDIA4P13667 645 aaKnown RBP9.37□□□□□ -0.91
LMO3-225ENST00000541295 PKNOX2Q96KN3 472 aa9.36□□□□□ -0.91
LMO3-225ENST00000541295 PABPN1Q86U42 306 aaKnown RBP eCLIP9.34□□□□□ -0.91
LMO3-225ENST00000541295 TAOK2Q9UL54 1235 aa9.34□□□□□ -0.91
LMO3-225ENST00000541295 NPM2Q86SE8 214 aaKnown RBP9.33□□□□□ -0.92
LMO3-225ENST00000541295 PDE4CQ08493 712 aa9.3□□□□□ -0.92
LMO3-225ENST00000541295 ANP32EQ9BTT0 268 aa9.29□□□□□ -0.92
LMO3-225ENST00000541295 CECR2Q9BXF3 1484 aa9.29□□□□□ -0.92
LMO3-225ENST00000541295 C14orf37Q86TY3 774 aa9.27□□□□□ -0.93
LMO3-225ENST00000541295 RSF1Q96T23 1441 aaPredicted RBP9.27□□□□□ -0.93
LMO3-225ENST00000541295 KCNA4P22459 653 aa9.25□□□□□ -0.93
LMO3-225ENST00000541295 TPRNQ4KMQ1 711 aa9.25□□□□□ -0.93
LMO3-225ENST00000541295 UNC13AQ9UPW8 1703 aa9.25□□□□□ -0.93
LMO3-225ENST00000541295 BCANQ96GW7 911 aa9.22□□□□□ -0.93
LMO3-225ENST00000541295 MROH2BQ7Z745 1585 aa9.21□□□□□ -0.93
LMO3-225ENST00000541295 ANO8Q9HCE9 1232 aaPredicted RBP9.19□□□□□ -0.94
LMO3-225ENST00000541295 GTF3C3Q9Y5Q9 886 aa9.17□□□□□ -0.94
LMO3-225ENST00000541295 BICRAQ9NZM4 1560 aa9.15□□□□□ -0.94
LMO3-225ENST00000541295 WIZO95785 1651 aa9.15□□□□□ -0.94
LMO3-225ENST00000541295 TAF7LQ5H9L4 462 aa9.14□□□□□ -0.95
LMO3-225ENST00000541295 BAZ1AQ9NRL2 1556 aaPredicted RBP9.14□□□□□ -0.95
LMO3-225ENST00000541295 FBXO3Q9UK99 471 aa9.13□□□□□ -0.95
LMO3-225ENST00000541295 HAP1P54257 671 aaPredicted RBP9.11□□□□□ -0.95
LMO3-225ENST00000541295 SMARCA4P51532 1647 aa9.09□□□□□ -0.95
LMO3-225ENST00000541295 CSRNP3Q8WYN3 585 aa9.08□□□□□ -0.96
LMO3-225ENST00000541295 BRD2P25440 801 aaKnown RBP9.06□□□□□ -0.96
LMO3-225ENST00000541295 CHMP4AQ9BY43 222 aa9.06□□□□□ -0.96
LMO3-225ENST00000541295 CDK11BP21127 795 aaKnown RBP9.05□□□□□ -0.96
LMO3-225ENST00000541295 CDK11AQ9UQ88 783 aaPredicted RBP9.05□□□□□ -0.96
LMO3-225ENST00000541295 ACIN1Q9UKV3 1341 aaKnown RBP9.05□□□□□ -0.96
LMO3-225ENST00000541295 GLIPR1L2Q4G1C9 344 aa9.03□□□□□ -0.96
LMO3-225ENST00000541295 BCL11BQ9C0K0 894 aaPredicted RBP9.02□□□□□ -0.97
LMO3-225ENST00000541295 TRIM41Q8WV44 630 aa9.02□□□□□ -0.97
LMO3-225ENST00000541295 ERICH6BQ5W0A0 696 aa9.01□□□□□ -0.97
LMO3-225ENST00000541295 CLSPNQ9HAW4 1339 aa9.01□□□□□ -0.97
LMO3-225ENST00000541295 FGD1P98174 961 aa9.01□□□□□ -0.97
LMO3-225ENST00000541295 ZNF326Q5BKZ1 582 aaKnown RBP9□□□□□ -0.97
LMO3-225ENST00000541295 TOP2AP11388 1531 aaKnown RBP8.99□□□□□ -0.97
LMO3-225ENST00000541295 ZEB1P37275 1124 aaPredicted RBP8.99□□□□□ -0.97
LMO3-225ENST00000541295 DHX37Q8IY37 1157 aaKnown RBP8.99□□□□□ -0.97
LMO3-225ENST00000541295 LOC105371045A0A1W2PR82 267 aa8.97□□□□□ -0.97
LMO3-225ENST00000541295 CCDC88BA6NC98 1476 aa8.95□□□□□ -0.98
LMO3-225ENST00000541295 MYT1LQ9UL68 1186 aa8.95□□□□□ -0.98
LMO3-225ENST00000541295 BAZ1BQ9UIG0 1483 aaKnown RBP8.94□□□□□ -0.98
LMO3-225ENST00000541295 ATAD2BQ9ULI0 1458 aa8.94□□□□□ -0.98
LMO3-225ENST00000541295 PPARGC1BQ86YN6 1023 aaKnown RBP8.93□□□□□ -0.98
LMO3-225ENST00000541295 SMARCA2P51531 1590 aa8.93□□□□□ -0.98
LMO3-225ENST00000541295 A0A0U1RQG5 324 aaPredicted RBP8.93□□□□□ -0.98
LMO3-225ENST00000541295 TRIM26Q12899 539 aaPredicted RBP8.92□□□□□ -0.98
LMO3-225ENST00000541295 POLR3GLQ9BT43 218 aa8.91□□□□□ -0.98
LMO3-225ENST00000541295 EIF4G1Q04637 1599 aaKnown RBP8.91□□□□□ -0.98
LMO3-225ENST00000541295 HSP90B1P14625 803 aaKnown RBP8.9□□□□□ -0.99
LMO3-225ENST00000541295 SAMD1Q6SPF0 538 aaPredicted RBP8.9□□□□□ -0.99
LMO3-225ENST00000541295 SALL2Q9Y467 1007 aaPredicted RBP8.9□□□□□ -0.99
LMO3-225ENST00000541295 CCDC136Q96JN2 1154 aa8.89□□□□□ -0.99
LMO3-225ENST00000541295 TMEM132AQ24JP5 1023 aa8.89□□□□□ -0.99
LMO3-225ENST00000541295 SENP3Q9H4L4 574 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms