RNA–Protein interactions for RNA: ENST00000539952.5

CPSF7-219, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 953 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-219ENST00000539952 AEBP2Q6ZN18 517 aaPredicted RBP15.2■□□□□ 0.02
CPSF7-219ENST00000539952 NISCHQ9Y2I1 1504 aa14.92□□□□□ -0.02
CPSF7-219ENST00000539952 CHIC1Q5VXU3 224 aa14.87□□□□□ -0.03
CPSF7-219ENST00000539952 ABCC9O60706 1549 aa13.74□□□□□ -0.21
CPSF7-219ENST00000539952 CCDC180Q9P1Z9 1646 aa13.41□□□□□ -0.26
CPSF7-219ENST00000539952 PHF23Q9BUL5 403 aaPredicted RBP13.24□□□□□ -0.29
CPSF7-219ENST00000539952 DNAJC5BQ9UF47 199 aa13.23□□□□□ -0.29
CPSF7-219ENST00000539952 RB1CC1Q8TDY2 1594 aa12.97□□□□□ -0.33
CPSF7-219ENST00000539952 DCAF8L2P0C7V8 631 aa12.89□□□□□ -0.35
CPSF7-219ENST00000539952 PABPN1Q86U42 306 aaKnown RBP eCLIP12.86□□□□□ -0.35
CPSF7-219ENST00000539952 NACADO15069 1562 aa12.84□□□□□ -0.35
CPSF7-219ENST00000539952 DNAJC5Q9H3Z4 198 aa12.73□□□□□ -0.37
CPSF7-219ENST00000539952 SENP3Q9H4L4 574 aaPredicted RBP12.61□□□□□ -0.39
CPSF7-219ENST00000539952 MYO15BQ96JP2 1530 aa12.61□□□□□ -0.39
CPSF7-219ENST00000539952 BICRAQ9NZM4 1560 aa12.55□□□□□ -0.4
CPSF7-219ENST00000539952 UNC13AQ9UPW8 1703 aa12.51□□□□□ -0.41
CPSF7-219ENST00000539952 CECR2Q9BXF3 1484 aa12.45□□□□□ -0.42
CPSF7-219ENST00000539952 SHROOM4Q9ULL8 1493 aa12.43□□□□□ -0.42
CPSF7-219ENST00000539952 CC2D2AQ9P2K1 1620 aa12.37□□□□□ -0.43
CPSF7-219ENST00000539952 DCAF1Q9Y4B6 1507 aa12.32□□□□□ -0.44
CPSF7-219ENST00000539952 EIF4G1Q04637 1599 aaKnown RBP12.29□□□□□ -0.44
CPSF7-219ENST00000539952 ZCCHC6Q5VYS8 1495 aaKnown RBP12.27□□□□□ -0.45
CPSF7-219ENST00000539952 SCRIBQ14160 1630 aa12.21□□□□□ -0.46
CPSF7-219ENST00000539952 PLPPR3Q6T4P5 718 aa12.08□□□□□ -0.48
CPSF7-219ENST00000539952 CUX2O14529 1486 aa11.99□□□□□ -0.49
CPSF7-219ENST00000539952 NCAPD3P42695 1498 aa11.92□□□□□ -0.5
CPSF7-219ENST00000539952 ERCC6Q03468 1493 aa11.92□□□□□ -0.5
CPSF7-219ENST00000539952 FOXD1Q16676 465 aa11.86□□□□□ -0.51
CPSF7-219ENST00000539952 ATAD2BQ9ULI0 1458 aa11.8□□□□□ -0.52
CPSF7-219ENST00000539952 SMARCA2P51531 1590 aa11.74□□□□□ -0.53
CPSF7-219ENST00000539952 NESP48681 1621 aa11.71□□□□□ -0.53
CPSF7-219ENST00000539952 TRIM41Q8WV44 630 aa11.71□□□□□ -0.53
CPSF7-219ENST00000539952 HMGXB3Q12766 1538 aa11.7□□□□□ -0.54
CPSF7-219ENST00000539952 PPP6R1Q9UPN7 881 aa11.66□□□□□ -0.54
CPSF7-219ENST00000539952 BAZ1BQ9UIG0 1483 aaKnown RBP11.65□□□□□ -0.54
CPSF7-219ENST00000539952 PDS5BQ9NTI5 1447 aa11.65□□□□□ -0.54
CPSF7-219ENST00000539952 ADRA2BP18089 450 aa11.63□□□□□ -0.55
CPSF7-219ENST00000539952 SMARCA4P51532 1647 aa11.63□□□□□ -0.55
CPSF7-219ENST00000539952 LAMC3Q9Y6N6 1575 aa11.61□□□□□ -0.55
CPSF7-219ENST00000539952 BAZ1AQ9NRL2 1556 aaPredicted RBP11.59□□□□□ -0.55
CPSF7-219ENST00000539952 THOC2Q8NI27 1593 aaKnown RBP11.57□□□□□ -0.56
CPSF7-219ENST00000539952 CADPSQ9ULU8 1353 aa11.56□□□□□ -0.56
CPSF7-219ENST00000539952 OSCARQ8IYS5 282 aa11.56□□□□□ -0.56
CPSF7-219ENST00000539952 PEG3Q9GZU2 1588 aa11.55□□□□□ -0.56
CPSF7-219ENST00000539952 MRC2Q9UBG0 1479 aa11.48□□□□□ -0.57
CPSF7-219ENST00000539952 MROH2BQ7Z745 1585 aa11.47□□□□□ -0.57
CPSF7-219ENST00000539952 KIF21AQ7Z4S6 1674 aa11.46□□□□□ -0.58
CPSF7-219ENST00000539952 WDR62O43379 1518 aa11.41□□□□□ -0.58
CPSF7-219ENST00000539952 CEP164Q9UPV0 1460 aa11.38□□□□□ -0.59
CPSF7-219ENST00000539952 FANCD2Q9BXW9 1451 aa11.36□□□□□ -0.59
CPSF7-219ENST00000539952 CFTRP13569 1480 aa11.32□□□□□ -0.6
CPSF7-219ENST00000539952 WIZO95785 1651 aa11.27□□□□□ -0.6
CPSF7-219ENST00000539952 CYB5RLQ6IPT4 315 aa11.26□□□□□ -0.61
CPSF7-219ENST00000539952 URB2Q14146 1524 aaKnown RBP11.25□□□□□ -0.61
CPSF7-219ENST00000539952 TRHP20396 242 aaPredicted RBP11.23□□□□□ -0.61
CPSF7-219ENST00000539952 IFT140Q96RY7 1462 aa11.2□□□□□ -0.62
CPSF7-219ENST00000539952 RSF1Q96T23 1441 aaPredicted RBP11.2□□□□□ -0.62
CPSF7-219ENST00000539952 RIMBP3CA6NJZ7 1639 aa11.2□□□□□ -0.62
CPSF7-219ENST00000539952 RIMBP3BA6NNM3 1639 aa11.2□□□□□ -0.62
CPSF7-219ENST00000539952 RIMBP3Q9UFD9 1639 aa11.2□□□□□ -0.62
CPSF7-219ENST00000539952 ARHGEF11O15085 1522 aa11.18□□□□□ -0.62
CPSF7-219ENST00000539952 PIAS4Q8N2W9 510 aaPredicted RBP11.16□□□□□ -0.62
CPSF7-219ENST00000539952 ABCC8Q09428 1581 aa11.16□□□□□ -0.62
CPSF7-219ENST00000539952 ZNF608Q9ULD9 1512 aaPredicted RBP11.15□□□□□ -0.62
CPSF7-219ENST00000539952 FBLN2P98095 1184 aa11.15□□□□□ -0.62
CPSF7-219ENST00000539952 ILDR1Q86SU0 546 aaPredicted RBP11.15□□□□□ -0.62
CPSF7-219ENST00000539952 TOP2AP11388 1531 aaKnown RBP11.14□□□□□ -0.63
CPSF7-219ENST00000539952 TOPBP1Q92547 1522 aa11.09□□□□□ -0.63
CPSF7-219ENST00000539952 CCDC88BA6NC98 1476 aa11.08□□□□□ -0.64
CPSF7-219ENST00000539952 AQRO60306 1485 aaKnown RBP eCLIP11.08□□□□□ -0.643e-7■■■■■ 40.5
CPSF7-219ENST00000539952 CHMP7Q8WUX9 453 aaPredicted RBP11.05□□□□□ -0.64
CPSF7-219ENST00000539952 ARAP1Q96P48 1450 aa11.03□□□□□ -0.64
CPSF7-219ENST00000539952 DNMBPQ6XZF7 1577 aa11□□□□□ -0.65
CPSF7-219ENST00000539952 TDRD9Q8NDG6 1382 aaKnown RBP11□□□□□ -0.65
CPSF7-219ENST00000539952 SOGA1O94964 1423 aa11□□□□□ -0.65
CPSF7-219ENST00000539952 EIF4G3O43432 1585 aaKnown RBP10.99□□□□□ -0.65
CPSF7-219ENST00000539952 PRDM2Q13029 1718 aa10.99□□□□□ -0.65
CPSF7-219ENST00000539952 TARBP1Q13395 1621 aaKnown RBP10.96□□□□□ -0.65
CPSF7-219ENST00000539952 POLA1P09884 1462 aaPredicted RBP10.96□□□□□ -0.65
CPSF7-219ENST00000539952 RAD54L2Q9Y4B4 1467 aa10.94□□□□□ -0.66
CPSF7-219ENST00000539952 CHD1O14646 1710 aa10.94□□□□□ -0.66
CPSF7-219ENST00000539952 GRIN2BQ13224 1484 aa10.89□□□□□ -0.67
CPSF7-219ENST00000539952 SNAPC4Q5SXM2 1469 aa10.89□□□□□ -0.67
CPSF7-219ENST00000539952 MAGI1Q96QZ7 1491 aaPredicted RBP10.89□□□□□ -0.67
CPSF7-219ENST00000539952 SYNJ1O43426 1573 aa10.89□□□□□ -0.67
CPSF7-219ENST00000539952 WDR97A6NE52 1622 aa10.87□□□□□ -0.67
CPSF7-219ENST00000539952 CLASP1Q7Z460 1538 aa10.87□□□□□ -0.67
CPSF7-219ENST00000539952 SYNJ2O15056 1496 aa10.87□□□□□ -0.67
CPSF7-219ENST00000539952 GAPVD1Q14C86 1478 aa10.86□□□□□ -0.67
CPSF7-219ENST00000539952 FGD5Q6ZNL6 1462 aa10.85□□□□□ -0.67
CPSF7-219ENST00000539952 KCNA4P22459 653 aa10.83□□□□□ -0.68
CPSF7-219ENST00000539952 CUX1P39880 1505 aa10.78□□□□□ -0.68
CPSF7-219ENST00000539952 NPM1P06748 294 aaKnown RBP eCLIP10.76□□□□□ -0.69
CPSF7-219ENST00000539952 PPP4R3CPQ6ZMV5 832 aa10.76□□□□□ -0.69
CPSF7-219ENST00000539952 ABCA10Q8WWZ4 1543 aa10.74□□□□□ -0.69
CPSF7-219ENST00000539952 JPH4Q96JJ6 628 aa10.73□□□□□ -0.69
CPSF7-219ENST00000539952 FAM69CQ0P6D2 419 aa10.72□□□□□ -0.69
CPSF7-219ENST00000539952 GRIN2AQ12879 1464 aa10.72□□□□□ -0.69
CPSF7-219ENST00000539952 NUP160Q12769 1436 aa10.7□□□□□ -0.7
CPSF7-219ENST00000539952 WRNQ14191 1432 aaPredicted RBP eCLIP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms