RNA–Protein interactions for RNA: ENST00000539934.5

DDX55-206, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 2,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-206ENST00000539934 NISCHQ9Y2I1 1504 aa27.18■■□□□ 1.94
DDX55-206ENST00000539934 ABCC9O60706 1549 aa25.2■■□□□ 1.62
DDX55-206ENST00000539934 CCDC180Q9P1Z9 1646 aa24.42■■□□□ 1.5
DDX55-206ENST00000539934 DNAJC5BQ9UF47 199 aa24.12■■□□□ 1.45
DDX55-206ENST00000539934 RB1CC1Q8TDY2 1594 aa23.55■■□□□ 1.36
DDX55-206ENST00000539934 DCAF8L2P0C7V8 631 aa23.52■■□□□ 1.36
DDX55-206ENST00000539934 PABPN1Q86U42 306 aaKnown RBP eCLIP23.51■■□□□ 1.35
DDX55-206ENST00000539934 NACADO15069 1562 aa23.24■■□□□ 1.31
DDX55-206ENST00000539934 UNC13AQ9UPW8 1703 aa23.1■■□□□ 1.29
DDX55-206ENST00000539934 BICRAQ9NZM4 1560 aa22.96■■□□□ 1.27
DDX55-206ENST00000539934 PELP1Q8IZL8 1130 aaKnown RBP22.76■■□□□ 1.23
DDX55-206ENST00000539934 MYT1Q01538 1121 aa22.69■■□□□ 1.22
DDX55-206ENST00000539934 CECR2Q9BXF3 1484 aa22.65■■□□□ 1.22
DDX55-206ENST00000539934 MYO15BQ96JP2 1530 aa22.65■■□□□ 1.22
DDX55-206ENST00000539934 CC2D2AQ9P2K1 1620 aa22.62■■□□□ 1.21
DDX55-206ENST00000539934 SCRIBQ14160 1630 aa22.5■■□□□ 1.19
DDX55-206ENST00000539934 EIF4G1Q04637 1599 aaKnown RBP22.43■■□□□ 1.18
DDX55-206ENST00000539934 ZCCHC6Q5VYS8 1495 aaKnown RBP22.41■■□□□ 1.18
DDX55-206ENST00000539934 SHROOM4Q9ULL8 1493 aa22.32■■□□□ 1.16
DDX55-206ENST00000539934 DNAJC5Q9H3Z4 198 aa22.31■■□□□ 1.16
DDX55-206ENST00000539934 DCAF1Q9Y4B6 1507 aa22.24■■□□□ 1.15
DDX55-206ENST00000539934 TTBK1Q5TCY1 1321 aaPredicted RBP22.1■■□□□ 1.13
DDX55-206ENST00000539934 ERCC6Q03468 1493 aa21.73■■□□□ 1.07
DDX55-206ENST00000539934 SLC24A1O60721 1099 aa21.65■■□□□ 1.06
DDX55-206ENST00000539934 CUX2O14529 1486 aa21.65■■□□□ 1.06
DDX55-206ENST00000539934 NESP48681 1621 aa21.54■■□□□ 1.04
DDX55-206ENST00000539934 NCAPD3P42695 1498 aa21.51■■□□□ 1.03
DDX55-206ENST00000539934 ATAD2BQ9ULI0 1458 aa21.45■■□□□ 1.02
DDX55-206ENST00000539934 TRIM41Q8WV44 630 aa21.37■■□□□ 1.01
DDX55-206ENST00000539934 SMARCA4P51532 1647 aa21.3■■□□□ 1
DDX55-206ENST00000539934 PRKCSHP14314 528 aaPredicted RBP21.29■■□□□ 1
DDX55-206ENST00000539934 SMARCA2P51531 1590 aa21.28■■□□□ 1
DDX55-206ENST00000539934 HMGXB3Q12766 1538 aa21.26■□□□□ 0.99
DDX55-206ENST00000539934 BAZ1BQ9UIG0 1483 aaKnown RBP21.24■□□□□ 0.99
DDX55-206ENST00000539934 THOC2Q8NI27 1593 aaKnown RBP21.22■□□□□ 0.99
DDX55-206ENST00000539934 KIF21AQ7Z4S6 1674 aa21.13■□□□□ 0.97
DDX55-206ENST00000539934 APLP2Q06481 763 aa21.12■□□□□ 0.97
DDX55-206ENST00000539934 ERICH6Q7L0X2 663 aa21.09■□□□□ 0.97
DDX55-206ENST00000539934 BAZ1AQ9NRL2 1556 aaPredicted RBP21.08■□□□□ 0.97
DDX55-206ENST00000539934 LAMC3Q9Y6N6 1575 aa21.07■□□□□ 0.96
DDX55-206ENST00000539934 MROH2BQ7Z745 1585 aa21.04■□□□□ 0.96
DDX55-206ENST00000539934 PDS5BQ9NTI5 1447 aa21.02■□□□□ 0.96
DDX55-206ENST00000539934 PEG3Q9GZU2 1588 aa20.98■□□□□ 0.95
DDX55-206ENST00000539934 SUPT5HO00267 1087 aaKnown RBP20.94■□□□□ 0.94
DDX55-206ENST00000539934 CADPSQ9ULU8 1353 aa20.9■□□□□ 0.94
DDX55-206ENST00000539934 MRC2Q9UBG0 1479 aa20.87■□□□□ 0.93
DDX55-206ENST00000539934 WDR62O43379 1518 aa20.8■□□□□ 0.92
DDX55-206ENST00000539934 WIZO95785 1651 aa20.78■□□□□ 0.92
DDX55-206ENST00000539934 OSCARQ8IYS5 282 aa20.76■□□□□ 0.91
DDX55-206ENST00000539934 CEP164Q9UPV0 1460 aa20.73■□□□□ 0.91
DDX55-206ENST00000539934 FANCD2Q9BXW9 1451 aa20.7■□□□□ 0.9
DDX55-206ENST00000539934 DAXXQ9UER7 740 aaPredicted RBP20.61■□□□□ 0.89
DDX55-206ENST00000539934 URB2Q14146 1524 aaKnown RBP20.57■□□□□ 0.88
DDX55-206ENST00000539934 CFTRP13569 1480 aa20.54■□□□□ 0.88
DDX55-206ENST00000539934 RIMBP3CA6NJZ7 1639 aa20.5■□□□□ 0.87
DDX55-206ENST00000539934 RIMBP3BA6NNM3 1639 aa20.5■□□□□ 0.87
DDX55-206ENST00000539934 RIMBP3Q9UFD9 1639 aa20.5■□□□□ 0.87
DDX55-206ENST00000539934 ZNF608Q9ULD9 1512 aaPredicted RBP20.46■□□□□ 0.87
DDX55-206ENST00000539934 CYB5RLQ6IPT4 315 aa20.45■□□□□ 0.86
DDX55-206ENST00000539934 RSF1Q96T23 1441 aaPredicted RBP20.43■□□□□ 0.86
DDX55-206ENST00000539934 ARHGEF11O15085 1522 aa20.4■□□□□ 0.86
DDX55-206ENST00000539934 TRHP20396 242 aaPredicted RBP20.38■□□□□ 0.85
DDX55-206ENST00000539934 TOP2AP11388 1531 aaKnown RBP20.35■□□□□ 0.85
DDX55-206ENST00000539934 BCL11AQ9H165 835 aa20.34■□□□□ 0.85
DDX55-206ENST00000539934 FBLN2P98095 1184 aa20.31■□□□□ 0.84
DDX55-206ENST00000539934 IFT140Q96RY7 1462 aa20.28■□□□□ 0.84
DDX55-206ENST00000539934 AQRO60306 1485 aaKnown RBP eCLIP20.24■□□□□ 0.832e-6■■■■■ 27.6
DDX55-206ENST00000539934 TOPBP1Q92547 1522 aa20.24■□□□□ 0.83
DDX55-206ENST00000539934 CCDC88BA6NC98 1476 aa20.23■□□□□ 0.83
DDX55-206ENST00000539934 EIF4G3O43432 1585 aaKnown RBP20.23■□□□□ 0.83
DDX55-206ENST00000539934 PRDM2Q13029 1718 aa20.19■□□□□ 0.82
DDX55-206ENST00000539934 ARAP1Q96P48 1450 aa20.18■□□□□ 0.82
DDX55-206ENST00000539934 CHD1O14646 1710 aa20.17■□□□□ 0.82
DDX55-206ENST00000539934 CHIC1Q5VXU3 224 aa20.09■□□□□ 0.81
DDX55-206ENST00000539934 TDRD9Q8NDG6 1382 aaKnown RBP20.07■□□□□ 0.8
DDX55-206ENST00000539934 RAD54L2Q9Y4B4 1467 aa20.07■□□□□ 0.8
DDX55-206ENST00000539934 DNMBPQ6XZF7 1577 aa20.06■□□□□ 0.8
DDX55-206ENST00000539934 TARBP1Q13395 1621 aaKnown RBP20.06■□□□□ 0.8
DDX55-206ENST00000539934 AEBP2Q6ZN18 517 aaPredicted RBP20.05■□□□□ 0.8
DDX55-206ENST00000539934 POLA1P09884 1462 aaPredicted RBP20.03■□□□□ 0.8
DDX55-206ENST00000539934 ABCC8Q09428 1581 aa20.02■□□□□ 0.79
DDX55-206ENST00000539934 HRCP23327 699 aa20.01■□□□□ 0.79
DDX55-206ENST00000539934 FAM9AQ8IZU1 332 aaPredicted RBP19.99■□□□□ 0.79
DDX55-206ENST00000539934 CHMP7Q8WUX9 453 aaPredicted RBP19.96■□□□□ 0.79
DDX55-206ENST00000539934 SOGA1O94964 1423 aa19.95■□□□□ 0.78
DDX55-206ENST00000539934 SNAPC4Q5SXM2 1469 aa19.95■□□□□ 0.78
DDX55-206ENST00000539934 SCAF1Q9H7N4 1312 aaKnown RBP19.88■□□□□ 0.77
DDX55-206ENST00000539934 FGD5Q6ZNL6 1462 aa19.86■□□□□ 0.77
DDX55-206ENST00000539934 CLASP1Q7Z460 1538 aa19.85■□□□□ 0.77
DDX55-206ENST00000539934 SYNJ1O43426 1573 aa19.8■□□□□ 0.76
DDX55-206ENST00000539934 GAPVD1Q14C86 1478 aa19.76■□□□□ 0.75
DDX55-206ENST00000539934 CUX1P39880 1505 aa19.76■□□□□ 0.75
DDX55-206ENST00000539934 GRIN2BQ13224 1484 aa19.75■□□□□ 0.75
DDX55-206ENST00000539934 MAGI1Q96QZ7 1491 aaPredicted RBP19.75■□□□□ 0.75
DDX55-206ENST00000539934 EIF5BO60841 1220 aaKnown RBP19.75■□□□□ 0.75
DDX55-206ENST00000539934 SYNJ2O15056 1496 aa19.74■□□□□ 0.75
DDX55-206ENST00000539934 ERCC6L2Q5T890 1561 aa19.7■□□□□ 0.74
DDX55-206ENST00000539934 PBRM1Q86U86 1689 aa19.65■□□□□ 0.74
DDX55-206ENST00000539934 WDR97A6NE52 1622 aa19.61■□□□□ 0.73
DDX55-206ENST00000539934 GRIN2AQ12879 1464 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 146.6 ms