RNA–Protein interactions for RNA: ENST00000539739.5

DDB1-216, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 5

Gene DDB1, Length 1,624 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-216ENST00000539739 NISCHQ9Y2I1 1504 aa36.36■■■■□ 3.41
DDB1-216ENST00000539739 CCDC180Q9P1Z9 1646 aa32.06■■■□□ 2.72
DDB1-216ENST00000539739 ABCC9O60706 1549 aa30.95■■■□□ 2.55
DDB1-216ENST00000539739 ZCCHC6Q5VYS8 1495 aaKnown RBP30.38■■■□□ 2.45
DDB1-216ENST00000539739 DCAF8L2P0C7V8 631 aa30.29■■■□□ 2.44
DDB1-216ENST00000539739 DCAF1Q9Y4B6 1507 aa30.1■■■□□ 2.41
DDB1-216ENST00000539739 NACADO15069 1562 aa30.07■■■□□ 2.4
DDB1-216ENST00000539739 MYO15BQ96JP2 1530 aa30.04■■■□□ 2.4
DDB1-216ENST00000539739 RB1CC1Q8TDY2 1594 aa29.99■■■□□ 2.39
DDB1-216ENST00000539739 SCRIBQ14160 1630 aa29.32■■■□□ 2.28
DDB1-216ENST00000539739 UNC13AQ9UPW8 1703 aa29.22■■■□□ 2.27
DDB1-216ENST00000539739 SHROOM4Q9ULL8 1493 aa29.08■■■□□ 2.25
DDB1-216ENST00000539739 PABPN1Q86U42 306 aaKnown RBP eCLIP29.04■■■□□ 2.24
DDB1-216ENST00000539739 BICRAQ9NZM4 1560 aa29■■■□□ 2.23
DDB1-216ENST00000539739 CECR2Q9BXF3 1484 aa28.25■■■□□ 2.11
DDB1-216ENST00000539739 EIF4G1Q04637 1599 aaKnown RBP28.23■■■□□ 2.11
DDB1-216ENST00000539739 BAZ1AQ9NRL2 1556 aaPredicted RBP28.16■■■□□ 2.1
DDB1-216ENST00000539739 SMARCA4P51532 1647 aa28.08■■■□□ 2.09
DDB1-216ENST00000539739 MROH2BQ7Z745 1585 aa28.02■■■□□ 2.08
DDB1-216ENST00000539739 CC2D2AQ9P2K1 1620 aa27.99■■■□□ 2.07
DDB1-216ENST00000539739 DNAJC5BQ9UF47 199 aa27.94■■■□□ 2.06
DDB1-216ENST00000539739 RSF1Q96T23 1441 aaPredicted RBP27.9■■■□□ 2.06
DDB1-216ENST00000539739 ATAD2BQ9ULI0 1458 aa27.83■■■□□ 2.05
DDB1-216ENST00000539739 SMARCA2P51531 1590 aa27.83■■■□□ 2.05
DDB1-216ENST00000539739 PEG3Q9GZU2 1588 aa27.8■■■□□ 2.04
DDB1-216ENST00000539739 NCAPD3P42695 1498 aa27.75■■■□□ 2.03
DDB1-216ENST00000539739 WIZO95785 1651 aa27.73■■■□□ 2.03
DDB1-216ENST00000539739 SUPT5HO00267 1087 aaKnown RBP27.66■■■□□ 2.02
DDB1-216ENST00000539739 BAZ1BQ9UIG0 1483 aaKnown RBP27.65■■■□□ 2.02
DDB1-216ENST00000539739 HMGXB3Q12766 1538 aa27.64■■■□□ 2.01
DDB1-216ENST00000539739 TOP2AP11388 1531 aaKnown RBP27.49■■□□□ 1.99
DDB1-216ENST00000539739 CCDC88BA6NC98 1476 aa27.18■■□□□ 1.94
DDB1-216ENST00000539739 CADPSQ9ULU8 1353 aa26.99■■□□□ 1.91
DDB1-216ENST00000539739 LAMC3Q9Y6N6 1575 aa26.92■■□□□ 1.9
DDB1-216ENST00000539739 CFTRP13569 1480 aa26.91■■□□□ 1.9
DDB1-216ENST00000539739 NESP48681 1621 aa26.9■■□□□ 1.9
DDB1-216ENST00000539739 PDS5BQ9NTI5 1447 aa26.78■■□□□ 1.88
DDB1-216ENST00000539739 PRDM2Q13029 1718 aa26.68■■□□□ 1.86
DDB1-216ENST00000539739 ERCC6Q03468 1493 aa26.67■■□□□ 1.86
DDB1-216ENST00000539739 FANCD2Q9BXW9 1451 aa26.67■■□□□ 1.86
DDB1-216ENST00000539739 CEP164Q9UPV0 1460 aa26.59■■□□□ 1.85
DDB1-216ENST00000539739 KIF21AQ7Z4S6 1674 aa26.57■■□□□ 1.84
DDB1-216ENST00000539739 MRC2Q9UBG0 1479 aa26.44■■□□□ 1.82
DDB1-216ENST00000539739 THOC2Q8NI27 1593 aaKnown RBP26.36■■□□□ 1.81
DDB1-216ENST00000539739 ABCC8Q09428 1581 aa26.35■■□□□ 1.81
DDB1-216ENST00000539739 URB2Q14146 1524 aaKnown RBP26.34■■□□□ 1.81
DDB1-216ENST00000539739 WRNQ14191 1432 aaPredicted RBP eCLIP26.32■■□□□ 1.8
DDB1-216ENST00000539739 WDR62O43379 1518 aa26.31■■□□□ 1.8
DDB1-216ENST00000539739 DNMBPQ6XZF7 1577 aa26.29■■□□□ 1.8
DDB1-216ENST00000539739 TOPBP1Q92547 1522 aa26.29■■□□□ 1.8
DDB1-216ENST00000539739 CUX1P39880 1505 aa26.25■■□□□ 1.79
DDB1-216ENST00000539739 CUX2O14529 1486 aa26.18■■□□□ 1.78
DDB1-216ENST00000539739 SYNJ1O43426 1573 aa26.17■■□□□ 1.78
DDB1-216ENST00000539739 TOP2BQ02880 1626 aa26.16■■□□□ 1.78
DDB1-216ENST00000539739 BIVM-ERCC5R4GMW8 1640 aa26.13■■□□□ 1.77
DDB1-216ENST00000539739 FGD5Q6ZNL6 1462 aa26.11■■□□□ 1.77
DDB1-216ENST00000539739 TRIM41Q8WV44 630 aa26.1■■□□□ 1.77
DDB1-216ENST00000539739 POLA1P09884 1462 aaPredicted RBP26.09■■□□□ 1.77
DDB1-216ENST00000539739 CHIC1Q5VXU3 224 aa26.08■■□□□ 1.77
DDB1-216ENST00000539739 SOGA1O94964 1423 aa26.04■■□□□ 1.76
DDB1-216ENST00000539739 IFT140Q96RY7 1462 aa26.01■■□□□ 1.75
DDB1-216ENST00000539739 RAD54L2Q9Y4B4 1467 aa25.98■■□□□ 1.75
DDB1-216ENST00000539739 TARBP1Q13395 1621 aaKnown RBP25.92■■□□□ 1.74
DDB1-216ENST00000539739 ABCA10Q8WWZ4 1543 aa25.89■■□□□ 1.73
DDB1-216ENST00000539739 TDRD9Q8NDG6 1382 aaKnown RBP25.82■■□□□ 1.72
DDB1-216ENST00000539739 ZNF608Q9ULD9 1512 aaPredicted RBP25.82■■□□□ 1.72
DDB1-216ENST00000539739 WDR97A6NE52 1622 aa25.8■■□□□ 1.72
DDB1-216ENST00000539739 AQRO60306 1485 aaKnown RBP eCLIP25.77■■□□□ 1.721e-8■■■■□ 26.3
DDB1-216ENST00000539739 KIF27Q86VH2 1401 aa25.75■■□□□ 1.71
DDB1-216ENST00000539739 GAPVD1Q14C86 1478 aa25.73■■□□□ 1.71
DDB1-216ENST00000539739 EIF4G3O43432 1585 aaKnown RBP25.72■■□□□ 1.71
DDB1-216ENST00000539739 ABCA5Q8WWZ7 1642 aa25.69■■□□□ 1.7
DDB1-216ENST00000539739 GRIN2BQ13224 1484 aa25.66■■□□□ 1.7
DDB1-216ENST00000539739 RUSC2Q8N2Y8 1516 aa25.61■■□□□ 1.69
DDB1-216ENST00000539739 EEA1Q15075 1411 aa25.6■■□□□ 1.69
DDB1-216ENST00000539739 ERICH3Q5RHP9 1530 aa25.58■■□□□ 1.69
DDB1-216ENST00000539739 PBRM1Q86U86 1689 aa25.58■■□□□ 1.69
DDB1-216ENST00000539739 IGF1RP08069 1367 aa25.57■■□□□ 1.68
DDB1-216ENST00000539739 FAM9AQ8IZU1 332 aaPredicted RBP25.54■■□□□ 1.68
DDB1-216ENST00000539739 SNAPC4Q5SXM2 1469 aa25.54■■□□□ 1.68
DDB1-216ENST00000539739 MAGI1Q96QZ7 1491 aaPredicted RBP25.53■■□□□ 1.68
DDB1-216ENST00000539739 CSRNP3Q8WYN3 585 aa25.51■■□□□ 1.67
DDB1-216ENST00000539739 FHAD1B1AJZ9 1412 aa25.46■■□□□ 1.67
DDB1-216ENST00000539739 CARMIL1Q5VZK9 1371 aa25.45■■□□□ 1.66
DDB1-216ENST00000539739 FBLN2P98095 1184 aa25.44■■□□□ 1.66
DDB1-216ENST00000539739 CHMP7Q8WUX9 453 aaPredicted RBP25.44■■□□□ 1.66
DDB1-216ENST00000539739 CUL7Q14999 1698 aa25.44■■□□□ 1.66
DDB1-216ENST00000539739 SYNJ2O15056 1496 aa25.42■■□□□ 1.66
DDB1-216ENST00000539739 ADAMTS12P58397 1594 aa25.42■■□□□ 1.66
DDB1-216ENST00000539739 PRXQ9BXM0 1461 aa25.34■■□□□ 1.65
DDB1-216ENST00000539739 RAPGEF2Q9Y4G8 1499 aa25.33■■□□□ 1.65
DDB1-216ENST00000539739 GRIN2AQ12879 1464 aa25.31■■□□□ 1.64
DDB1-216ENST00000539739 CHD1O14646 1710 aa25.29■■□□□ 1.64
DDB1-216ENST00000539739 OSCARQ8IYS5 282 aa25.25■■□□□ 1.63
DDB1-216ENST00000539739 KIF21BO75037 1637 aa25.23■■□□□ 1.63
DDB1-216ENST00000539739 EHMT2Q96KQ7 1210 aa25.17■■□□□ 1.62
DDB1-216ENST00000539739 NUP160Q12769 1436 aa25.17■■□□□ 1.62
DDB1-216ENST00000539739 GOLGA3Q08378 1498 aa25.16■■□□□ 1.62
DDB1-216ENST00000539739 CEP170Q5SW79 1584 aa25.13■■□□□ 1.61
DDB1-216ENST00000539739 UBTFP17480 764 aaKnown RBP25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms