RNA–Protein interactions for RNA: ENST00000539484.1

CCDC144NL-203, Transcript of coiled-coil domain containing 144 family, N-terminal like, humanhuman

TSL 3

Gene CCDC144NL, Length 751 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144NL-203ENST00000539484 AEBP2Q6ZN18 517 aaPredicted RBP32.73■■■□□ 2.83
CCDC144NL-203ENST00000539484 CHIC1Q5VXU3 224 aa30.64■■■□□ 2.5
CCDC144NL-203ENST00000539484 SENP3Q9H4L4 574 aaPredicted RBP28.06■■■□□ 2.08
CCDC144NL-203ENST00000539484 PHF23Q9BUL5 403 aaPredicted RBP27.62■■■□□ 2.01
CCDC144NL-203ENST00000539484 FOXD1Q16676 465 aa26.21■■□□□ 1.79
CCDC144NL-203ENST00000539484 POTEDQ86YR6 584 aa25.19■■□□□ 1.62
CCDC144NL-203ENST00000539484 MSH5O43196 834 aa24.78■■□□□ 1.56
CCDC144NL-203ENST00000539484 PIAS4Q8N2W9 510 aaPredicted RBP24.36■■□□□ 1.49
CCDC144NL-203ENST00000539484 PLPPR3Q6T4P5 718 aa24.14■■□□□ 1.45
CCDC144NL-203ENST00000539484 PPP6R1Q9UPN7 881 aa24.04■■□□□ 1.44
CCDC144NL-203ENST00000539484 ADRA2BP18089 450 aa23.94■■□□□ 1.42
CCDC144NL-203ENST00000539484 NISCHQ9Y2I1 1504 aa22.47■■□□□ 1.19
CCDC144NL-203ENST00000539484 MAPK8IP2Q13387 824 aaPredicted RBP22.18■■□□□ 1.14
CCDC144NL-203ENST00000539484 DMRT2Q9Y5R5 561 aa22.13■■□□□ 1.13
CCDC144NL-203ENST00000539484 SCAF1Q9H7N4 1312 aaKnown RBP21.97■■□□□ 1.11
CCDC144NL-203ENST00000539484 CACNB1Q02641 598 aaPredicted RBP21.67■■□□□ 1.06
CCDC144NL-203ENST00000539484 DCAF8L1A6NGE4 600 aa21.35■■□□□ 1.01
CCDC144NL-203ENST00000539484 HOXD11P31277 338 aaPredicted RBP21.08■□□□□ 0.97
CCDC144NL-203ENST00000539484 PPP4R3CPQ6ZMV5 832 aa21.08■□□□□ 0.97
CCDC144NL-203ENST00000539484 RNF39Q9H2S5 420 aa21.06■□□□□ 0.96
CCDC144NL-203ENST00000539484 CNKSR2Q8WXI2 1034 aa20.82■□□□□ 0.92
CCDC144NL-203ENST00000539484 RNF216Q9NWF9 866 aaPredicted RBP20.78■□□□□ 0.92
CCDC144NL-203ENST00000539484 C1QBPQ07021 282 aaKnown RBP20.75■□□□□ 0.91
CCDC144NL-203ENST00000539484 DNAJC5BQ9UF47 199 aa20.46■□□□□ 0.87
CCDC144NL-203ENST00000539484 ABCC9O60706 1549 aa20.27■□□□□ 0.83
CCDC144NL-203ENST00000539484 CCDC180Q9P1Z9 1646 aa20.26■□□□□ 0.83
CCDC144NL-203ENST00000539484 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.15■□□□□ 0.822e-7■■□□□ 13.7
CCDC144NL-203ENST00000539484 NCBP3Q53F19 620 aaKnown RBP20.12■□□□□ 0.81
CCDC144NL-203ENST00000539484 NPM3O75607 178 aaKnown RBP19.77■□□□□ 0.76
CCDC144NL-203ENST00000539484 POTEHQ6S545 545 aa19.64■□□□□ 0.73
CCDC144NL-203ENST00000539484 U3KPZ7 1027 aaPredicted RBP19.59■□□□□ 0.73
CCDC144NL-203ENST00000539484 CAPN15O75808 1086 aa19.55■□□□□ 0.72
CCDC144NL-203ENST00000539484 DSG3P32926 999 aa19.53■□□□□ 0.72
CCDC144NL-203ENST00000539484 SPINK5Q9NQ38 1064 aaPredicted RBP19.52■□□□□ 0.72
CCDC144NL-203ENST00000539484 RB1CC1Q8TDY2 1594 aa19.31■□□□□ 0.68
CCDC144NL-203ENST00000539484 NACADO15069 1562 aa19.15■□□□□ 0.66
CCDC144NL-203ENST00000539484 DCAF8L2P0C7V8 631 aa19.09■□□□□ 0.65
CCDC144NL-203ENST00000539484 TRHP20396 242 aaPredicted RBP19.09■□□□□ 0.65
CCDC144NL-203ENST00000539484 APLP2Q06481 763 aa19.05■□□□□ 0.64
CCDC144NL-203ENST00000539484 SLC4A2P04920 1241 aa19.03■□□□□ 0.64
CCDC144NL-203ENST00000539484 ABCB7O75027 752 aa19.02■□□□□ 0.64
CCDC144NL-203ENST00000539484 ZNF219Q9P2Y4 722 aaPredicted RBP19.01■□□□□ 0.63
CCDC144NL-203ENST00000539484 UNC13AQ9UPW8 1703 aa18.9■□□□□ 0.62
CCDC144NL-203ENST00000539484 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.88■□□□□ 0.61
CCDC144NL-203ENST00000539484 HNRNPUL2Q1KMD3 747 aaKnown RBP18.88■□□□□ 0.61
CCDC144NL-203ENST00000539484 KCNA4P22459 653 aa18.86■□□□□ 0.61
CCDC144NL-203ENST00000539484 PABPN1Q86U42 306 aaKnown RBP eCLIP18.85■□□□□ 0.61
CCDC144NL-203ENST00000539484 MYO15BQ96JP2 1530 aa18.81■□□□□ 0.6
CCDC144NL-203ENST00000539484 SAMD1Q6SPF0 538 aaPredicted RBP18.73■□□□□ 0.59
CCDC144NL-203ENST00000539484 RBM42Q9BTD8 480 aaKnown RBP18.68■□□□□ 0.58
CCDC144NL-203ENST00000539484 BICRAQ9NZM4 1560 aa18.66■□□□□ 0.58
CCDC144NL-203ENST00000539484 ZCCHC6Q5VYS8 1495 aaKnown RBP18.59■□□□□ 0.57
CCDC144NL-203ENST00000539484 DCAF1Q9Y4B6 1507 aa18.55■□□□□ 0.56
CCDC144NL-203ENST00000539484 CHRDL2Q6WN34 429 aa18.5■□□□□ 0.55
CCDC144NL-203ENST00000539484 SHROOM4Q9ULL8 1493 aa18.46■□□□□ 0.54
CCDC144NL-203ENST00000539484 SCRIBQ14160 1630 aa18.44■□□□□ 0.54
CCDC144NL-203ENST00000539484 POLA2Q14181 598 aa18.43■□□□□ 0.54
CCDC144NL-203ENST00000539484 CC2D2AQ9P2K1 1620 aa18.32■□□□□ 0.52
CCDC144NL-203ENST00000539484 MYCNP04198 464 aaPredicted RBP18.32■□□□□ 0.52
CCDC144NL-203ENST00000539484 CECR2Q9BXF3 1484 aa18.26■□□□□ 0.51
CCDC144NL-203ENST00000539484 EIF4G1Q04637 1599 aaKnown RBP18.25■□□□□ 0.51
CCDC144NL-203ENST00000539484 SP7Q8TDD2 431 aaPredicted RBP18.12■□□□□ 0.49
CCDC144NL-203ENST00000539484 AKT1S1Q96B36 256 aa18.12■□□□□ 0.49
CCDC144NL-203ENST00000539484 ZBTB12Q9Y330 459 aaPredicted RBP18■□□□□ 0.47
CCDC144NL-203ENST00000539484 REM2Q8IYK8 340 aaPredicted RBP17.95■□□□□ 0.46
CCDC144NL-203ENST00000539484 PIP4P2Q8N4L2 257 aa17.92■□□□□ 0.46
CCDC144NL-203ENST00000539484 ATF5Q9Y2D1 282 aaPredicted RBP17.92■□□□□ 0.46
CCDC144NL-203ENST00000539484 OSCARQ8IYS5 282 aa17.83■□□□□ 0.44
CCDC144NL-203ENST00000539484 HAX1O00165 279 aa17.82■□□□□ 0.44
CCDC144NL-203ENST00000539484 FOXD4L1Q9NU39 408 aa17.8■□□□□ 0.44
CCDC144NL-203ENST00000539484 PITPNM1O00562 1244 aa17.74■□□□□ 0.43
CCDC144NL-203ENST00000539484 FXR2P51116 673 aaKnown RBP eCLIP17.71■□□□□ 0.43
CCDC144NL-203ENST00000539484 SLC4A1APQ9BWU0 796 aaKnown RBP17.71■□□□□ 0.43
CCDC144NL-203ENST00000539484 NCAPD3P42695 1498 aa17.62■□□□□ 0.41
CCDC144NL-203ENST00000539484 SMARCA4P51532 1647 aa17.58■□□□□ 0.4
CCDC144NL-203ENST00000539484 SMARCA2P51531 1590 aa17.57■□□□□ 0.4
CCDC144NL-203ENST00000539484 ERCC6Q03468 1493 aa17.56■□□□□ 0.4
CCDC144NL-203ENST00000539484 ATAD2BQ9ULI0 1458 aa17.56■□□□□ 0.4
CCDC144NL-203ENST00000539484 DNAJC5Q9H3Z4 198 aa17.52■□□□□ 0.4
CCDC144NL-203ENST00000539484 HMGXB3Q12766 1538 aa17.52■□□□□ 0.39
CCDC144NL-203ENST00000539484 CUX2O14529 1486 aa17.51■□□□□ 0.39
CCDC144NL-203ENST00000539484 BAZ1AQ9NRL2 1556 aaPredicted RBP17.49■□□□□ 0.39
CCDC144NL-203ENST00000539484 EVX2Q03828 476 aa17.48■□□□□ 0.39
CCDC144NL-203ENST00000539484 BAZ1BQ9UIG0 1483 aaKnown RBP17.44■□□□□ 0.38
CCDC144NL-203ENST00000539484 SPDYE2BA6NHP3 402 aa17.39■□□□□ 0.37
CCDC144NL-203ENST00000539484 SPDYE6P0CI01 402 aa17.39■□□□□ 0.37
CCDC144NL-203ENST00000539484 SPDYE2Q495Y8 402 aa17.39■□□□□ 0.37
CCDC144NL-203ENST00000539484 PEG3Q9GZU2 1588 aa17.36■□□□□ 0.37
CCDC144NL-203ENST00000539484 NESP48681 1621 aa17.36■□□□□ 0.37
CCDC144NL-203ENST00000539484 FBLN2P98095 1184 aa17.33■□□□□ 0.36
CCDC144NL-203ENST00000539484 ATXN8OSP0DMR3 200 aa17.32■□□□□ 0.36
CCDC144NL-203ENST00000539484 PRKAR2AP13861 404 aaKnown RBP17.31■□□□□ 0.36
CCDC144NL-203ENST00000539484 ZBTB22O15209 634 aa17.3■□□□□ 0.36
CCDC144NL-203ENST00000539484 MROH2BQ7Z745 1585 aa17.3■□□□□ 0.36
CCDC144NL-203ENST00000539484 LAMC3Q9Y6N6 1575 aa17.3■□□□□ 0.36
CCDC144NL-203ENST00000539484 CLEC11AQ9Y240 323 aa17.28■□□□□ 0.36
CCDC144NL-203ENST00000539484 SPDYE1Q8NFV5 336 aaPredicted RBP17.25■□□□□ 0.35
CCDC144NL-203ENST00000539484 THOC2Q8NI27 1593 aaKnown RBP17.22■□□□□ 0.35
CCDC144NL-203ENST00000539484 KIF21AQ7Z4S6 1674 aa17.22■□□□□ 0.35
CCDC144NL-203ENST00000539484 PDS5BQ9NTI5 1447 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms