RNA–Protein interactions for RNA: ENST00000539332.2

DDB1-213, Transcript of damage specific DNA binding protein 1, humanhuman

TSL 2

Gene DDB1, Length 1,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDB1-213ENST00000539332 NISCHQ9Y2I1 1504 aa20.27■□□□□ 0.84
DDB1-213ENST00000539332 CCDC180Q9P1Z9 1646 aa17.83■□□□□ 0.45
DDB1-213ENST00000539332 ABCC9O60706 1549 aa17.02■□□□□ 0.32
DDB1-213ENST00000539332 ZCCHC6Q5VYS8 1495 aaKnown RBP16.98■□□□□ 0.31
DDB1-213ENST00000539332 DCAF1Q9Y4B6 1507 aa16.78■□□□□ 0.28
DDB1-213ENST00000539332 DCAF8L2P0C7V8 631 aa16.77■□□□□ 0.27
DDB1-213ENST00000539332 MYO15BQ96JP2 1530 aa16.68■□□□□ 0.26
DDB1-213ENST00000539332 NACADO15069 1562 aa16.64■□□□□ 0.25
DDB1-213ENST00000539332 RB1CC1Q8TDY2 1594 aa16.55■□□□□ 0.24
DDB1-213ENST00000539332 SHROOM4Q9ULL8 1493 aa16.32■□□□□ 0.2
DDB1-213ENST00000539332 SCRIBQ14160 1630 aa16.32■□□□□ 0.2
DDB1-213ENST00000539332 UNC13AQ9UPW8 1703 aa16.26■□□□□ 0.19
DDB1-213ENST00000539332 BICRAQ9NZM4 1560 aa16.06■□□□□ 0.16
DDB1-213ENST00000539332 PABPN1Q86U42 306 aaKnown RBP eCLIP15.98■□□□□ 0.15
DDB1-213ENST00000539332 CECR2Q9BXF3 1484 aa15.76■□□□□ 0.11
DDB1-213ENST00000539332 BAZ1AQ9NRL2 1556 aaPredicted RBP15.68■□□□□ 0.1
DDB1-213ENST00000539332 SMARCA4P51532 1647 aa15.65■□□□□ 0.1
DDB1-213ENST00000539332 MROH2BQ7Z745 1585 aa15.65■□□□□ 0.1
DDB1-213ENST00000539332 RSF1Q96T23 1441 aaPredicted RBP15.62■□□□□ 0.09
DDB1-213ENST00000539332 SUPT5HO00267 1087 aaKnown RBP15.59■□□□□ 0.09
DDB1-213ENST00000539332 EIF4G1Q04637 1599 aaKnown RBP15.59■□□□□ 0.09
DDB1-213ENST00000539332 WIZO95785 1651 aa15.52■□□□□ 0.07
DDB1-213ENST00000539332 PEG3Q9GZU2 1588 aa15.48■□□□□ 0.07
DDB1-213ENST00000539332 SMARCA2P51531 1590 aa15.43■□□□□ 0.06
DDB1-213ENST00000539332 ATAD2BQ9ULI0 1458 aa15.43■□□□□ 0.06
DDB1-213ENST00000539332 CC2D2AQ9P2K1 1620 aa15.42■□□□□ 0.06
DDB1-213ENST00000539332 TOP2AP11388 1531 aaKnown RBP15.35■□□□□ 0.05
DDB1-213ENST00000539332 NCAPD3P42695 1498 aa15.34■□□□□ 0.05
DDB1-213ENST00000539332 BAZ1BQ9UIG0 1483 aaKnown RBP15.33■□□□□ 0.04
DDB1-213ENST00000539332 HMGXB3Q12766 1538 aa15.32■□□□□ 0.04
DDB1-213ENST00000539332 DNAJC5BQ9UF47 199 aa15.21■□□□□ 0.02
DDB1-213ENST00000539332 CCDC88BA6NC98 1476 aa15.18■□□□□ 0.02
DDB1-213ENST00000539332 CHIC1Q5VXU3 224 aa15.04■□□□□ -0
DDB1-213ENST00000539332 CFTRP13569 1480 aa14.94□□□□□ -0.02
DDB1-213ENST00000539332 CADPSQ9ULU8 1353 aa14.92□□□□□ -0.02
DDB1-213ENST00000539332 PRDM2Q13029 1718 aa14.91□□□□□ -0.02
DDB1-213ENST00000539332 LAMC3Q9Y6N6 1575 aa14.87□□□□□ -0.03
DDB1-213ENST00000539332 NESP48681 1621 aa14.87□□□□□ -0.03
DDB1-213ENST00000539332 SLC24A1O60721 1099 aa14.84□□□□□ -0.03
DDB1-213ENST00000539332 ABCC8Q09428 1581 aa14.79□□□□□ -0.04
DDB1-213ENST00000539332 FANCD2Q9BXW9 1451 aa14.76□□□□□ -0.05
DDB1-213ENST00000539332 PDS5BQ9NTI5 1447 aa14.74□□□□□ -0.05
DDB1-213ENST00000539332 KIF21AQ7Z4S6 1674 aa14.73□□□□□ -0.05
DDB1-213ENST00000539332 WRNQ14191 1432 aaPredicted RBP eCLIP14.71□□□□□ -0.05
DDB1-213ENST00000539332 CEP164Q9UPV0 1460 aa14.7□□□□□ -0.06
DDB1-213ENST00000539332 TRIM41Q8WV44 630 aa14.7□□□□□ -0.06
DDB1-213ENST00000539332 SYNJ1O43426 1573 aa14.68□□□□□ -0.06
DDB1-213ENST00000539332 CUX1P39880 1505 aa14.65□□□□□ -0.06
DDB1-213ENST00000539332 TOP2BQ02880 1626 aa14.65□□□□□ -0.06
DDB1-213ENST00000539332 BIVM-ERCC5R4GMW8 1640 aa14.65□□□□□ -0.06
DDB1-213ENST00000539332 ERCC6Q03468 1493 aa14.62□□□□□ -0.07
DDB1-213ENST00000539332 DNMBPQ6XZF7 1577 aa14.6□□□□□ -0.07
DDB1-213ENST00000539332 URB2Q14146 1524 aaKnown RBP14.59□□□□□ -0.07
DDB1-213ENST00000539332 TOPBP1Q92547 1522 aa14.58□□□□□ -0.08
DDB1-213ENST00000539332 MRC2Q9UBG0 1479 aa14.57□□□□□ -0.08
DDB1-213ENST00000539332 THOC2Q8NI27 1593 aaKnown RBP14.54□□□□□ -0.08
DDB1-213ENST00000539332 FGD5Q6ZNL6 1462 aa14.52□□□□□ -0.08
DDB1-213ENST00000539332 WDR62O43379 1518 aa14.52□□□□□ -0.08
DDB1-213ENST00000539332 EEA1Q15075 1411 aa14.5□□□□□ -0.09
DDB1-213ENST00000539332 POLA1P09884 1462 aaPredicted RBP14.5□□□□□ -0.09
DDB1-213ENST00000539332 SOGA1O94964 1423 aa14.45□□□□□ -0.1
DDB1-213ENST00000539332 RAD54L2Q9Y4B4 1467 aa14.42□□□□□ -0.1
DDB1-213ENST00000539332 CUX2O14529 1486 aa14.41□□□□□ -0.1
DDB1-213ENST00000539332 TARBP1Q13395 1621 aaKnown RBP14.41□□□□□ -0.1
DDB1-213ENST00000539332 RUSC2Q8N2Y8 1516 aa14.41□□□□□ -0.1
DDB1-213ENST00000539332 WDR97A6NE52 1622 aa14.4□□□□□ -0.1
DDB1-213ENST00000539332 ABCA10Q8WWZ4 1543 aa14.4□□□□□ -0.1
DDB1-213ENST00000539332 LOC105371045A0A1W2PR82 267 aa14.39□□□□□ -0.11
DDB1-213ENST00000539332 FAM9AQ8IZU1 332 aaPredicted RBP14.39□□□□□ -0.11
DDB1-213ENST00000539332 KIF21BO75037 1637 aa14.37□□□□□ -0.11
DDB1-213ENST00000539332 KIF27Q86VH2 1401 aa14.36□□□□□ -0.11
DDB1-213ENST00000539332 IFT140Q96RY7 1462 aa14.36□□□□□ -0.11
DDB1-213ENST00000539332 ABCA5Q8WWZ7 1642 aa14.32□□□□□ -0.12
DDB1-213ENST00000539332 TDRD9Q8NDG6 1382 aaKnown RBP14.31□□□□□ -0.12
DDB1-213ENST00000539332 CSRNP3Q8WYN3 585 aa14.3□□□□□ -0.12
DDB1-213ENST00000539332 ZNF608Q9ULD9 1512 aaPredicted RBP14.29□□□□□ -0.12
DDB1-213ENST00000539332 GAPVD1Q14C86 1478 aa14.27□□□□□ -0.12
DDB1-213ENST00000539332 GOLGA3Q08378 1498 aa14.27□□□□□ -0.13
DDB1-213ENST00000539332 AQRO60306 1485 aaKnown RBP eCLIP14.26□□□□□ -0.133e-11■■■■■ 33.7
DDB1-213ENST00000539332 EIF4G3O43432 1585 aaKnown RBP14.26□□□□□ -0.13
DDB1-213ENST00000539332 ERICH3Q5RHP9 1530 aa14.26□□□□□ -0.13
DDB1-213ENST00000539332 IGF1RP08069 1367 aa14.25□□□□□ -0.13
DDB1-213ENST00000539332 PBRM1Q86U86 1689 aa14.24□□□□□ -0.13
DDB1-213ENST00000539332 PRXQ9BXM0 1461 aa14.24□□□□□ -0.13
DDB1-213ENST00000539332 TNIKQ9UKE5 1360 aa14.22□□□□□ -0.13
DDB1-213ENST00000539332 CUL7Q14999 1698 aa14.21□□□□□ -0.14
DDB1-213ENST00000539332 GRIN2BQ13224 1484 aa14.2□□□□□ -0.14
DDB1-213ENST00000539332 EHMT2Q96KQ7 1210 aa14.18□□□□□ -0.14
DDB1-213ENST00000539332 RAPGEF2Q9Y4G8 1499 aa14.18□□□□□ -0.14
DDB1-213ENST00000539332 CARMIL1Q5VZK9 1371 aa14.17□□□□□ -0.14
DDB1-213ENST00000539332 ADAMTS12P58397 1594 aa14.14□□□□□ -0.15
DDB1-213ENST00000539332 CEP162Q5TB80 1403 aa14.13□□□□□ -0.15
DDB1-213ENST00000539332 SNAPC4Q5SXM2 1469 aa14.13□□□□□ -0.15
DDB1-213ENST00000539332 MAGI1Q96QZ7 1491 aaPredicted RBP14.12□□□□□ -0.15
DDB1-213ENST00000539332 FHAD1B1AJZ9 1412 aa14.11□□□□□ -0.15
DDB1-213ENST00000539332 UBTFP17480 764 aaKnown RBP14.09□□□□□ -0.15
DDB1-213ENST00000539332 SYNJ2O15056 1496 aa14.06□□□□□ -0.16
DDB1-213ENST00000539332 CTTNBP2Q8WZ74 1663 aa14.03□□□□□ -0.16
DDB1-213ENST00000539332 GRIN2AQ12879 1464 aa14.03□□□□□ -0.16
DDB1-213ENST00000539332 CHMP7Q8WUX9 453 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms