RNA–Protein interactions for RNA: ENST00000537296.5

LDHA-215, Transcript of lactate dehydrogenase A, humanhuman

TSL 2

Gene LDHA, Length 1,511 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHA-215ENST00000537296 NISCHQ9Y2I1 1504 aa26.59■■□□□ 1.85
LDHA-215ENST00000537296 AEBP2Q6ZN18 517 aaPredicted RBP24.89■■□□□ 1.57
LDHA-215ENST00000537296 CHIC1Q5VXU3 224 aa24.47■■□□□ 1.51
LDHA-215ENST00000537296 CCDC180Q9P1Z9 1646 aa23.66■■□□□ 1.38
LDHA-215ENST00000537296 ABCC9O60706 1549 aa23.28■■□□□ 1.32
LDHA-215ENST00000537296 RB1CC1Q8TDY2 1594 aa22.29■■□□□ 1.16
LDHA-215ENST00000537296 DCAF8L2P0C7V8 631 aa22.26■■□□□ 1.15
LDHA-215ENST00000537296 NACADO15069 1562 aa22.23■■□□□ 1.15
LDHA-215ENST00000537296 ZCCHC6Q5VYS8 1495 aaKnown RBP22.14■■□□□ 1.13
LDHA-215ENST00000537296 MYO15BQ96JP2 1530 aa22.04■■□□□ 1.12
LDHA-215ENST00000537296 DCAF1Q9Y4B6 1507 aa21.93■■□□□ 1.1
LDHA-215ENST00000537296 UNC13AQ9UPW8 1703 aa21.93■■□□□ 1.1
LDHA-215ENST00000537296 PABPN1Q86U42 306 aaKnown RBP eCLIP21.75■■□□□ 1.07
LDHA-215ENST00000537296 BICRAQ9NZM4 1560 aa21.71■■□□□ 1.07
LDHA-215ENST00000537296 SCRIBQ14160 1630 aa21.65■■□□□ 1.06
LDHA-215ENST00000537296 PHF23Q9BUL5 403 aaPredicted RBP21.53■■□□□ 1.04
LDHA-215ENST00000537296 DNAJC5BQ9UF47 199 aa21.48■■□□□ 1.03
LDHA-215ENST00000537296 SHROOM4Q9ULL8 1493 aa21.31■■□□□ 1
LDHA-215ENST00000537296 SENP3Q9H4L4 574 aaPredicted RBP21.13■□□□□ 0.97
LDHA-215ENST00000537296 EIF4G1Q04637 1599 aaKnown RBP21.1■□□□□ 0.97
LDHA-215ENST00000537296 CC2D2AQ9P2K1 1620 aa21.06■□□□□ 0.96
LDHA-215ENST00000537296 CECR2Q9BXF3 1484 aa20.89■□□□□ 0.93
LDHA-215ENST00000537296 SMARCA4P51532 1647 aa20.67■□□□□ 0.9
LDHA-215ENST00000537296 BAZ1AQ9NRL2 1556 aaPredicted RBP20.59■□□□□ 0.89
LDHA-215ENST00000537296 ATAD2BQ9ULI0 1458 aa20.55■□□□□ 0.88
LDHA-215ENST00000537296 MROH2BQ7Z745 1585 aa20.54■□□□□ 0.88
LDHA-215ENST00000537296 NCAPD3P42695 1498 aa20.52■□□□□ 0.88
LDHA-215ENST00000537296 SMARCA2P51531 1590 aa20.49■□□□□ 0.87
LDHA-215ENST00000537296 PEG3Q9GZU2 1588 aa20.43■□□□□ 0.86
LDHA-215ENST00000537296 HMGXB3Q12766 1538 aa20.42■□□□□ 0.86
LDHA-215ENST00000537296 BAZ1BQ9UIG0 1483 aaKnown RBP20.37■□□□□ 0.85
LDHA-215ENST00000537296 WIZO95785 1651 aa20.34■□□□□ 0.85
LDHA-215ENST00000537296 RSF1Q96T23 1441 aaPredicted RBP20.24■□□□□ 0.83
LDHA-215ENST00000537296 NESP48681 1621 aa20.15■□□□□ 0.82
LDHA-215ENST00000537296 TOP2AP11388 1531 aaKnown RBP20.05■□□□□ 0.8
LDHA-215ENST00000537296 ERCC6Q03468 1493 aa20.02■□□□□ 0.8
LDHA-215ENST00000537296 LAMC3Q9Y6N6 1575 aa20■□□□□ 0.79
LDHA-215ENST00000537296 PLPPR3Q6T4P5 718 aa19.97■□□□□ 0.79
LDHA-215ENST00000537296 KIF21AQ7Z4S6 1674 aa19.92■□□□□ 0.78
LDHA-215ENST00000537296 CADPSQ9ULU8 1353 aa19.92■□□□□ 0.78
LDHA-215ENST00000537296 THOC2Q8NI27 1593 aaKnown RBP19.84■□□□□ 0.77
LDHA-215ENST00000537296 PDS5BQ9NTI5 1447 aa19.83■□□□□ 0.77
LDHA-215ENST00000537296 CCDC88BA6NC98 1476 aa19.83■□□□□ 0.77
LDHA-215ENST00000537296 CUX2O14529 1486 aa19.8■□□□□ 0.76
LDHA-215ENST00000537296 CFTRP13569 1480 aa19.8■□□□□ 0.76
LDHA-215ENST00000537296 FANCD2Q9BXW9 1451 aa19.72■□□□□ 0.75
LDHA-215ENST00000537296 PRDM2Q13029 1718 aa19.7■□□□□ 0.74
LDHA-215ENST00000537296 CEP164Q9UPV0 1460 aa19.69■□□□□ 0.74
LDHA-215ENST00000537296 SUPT5HO00267 1087 aaKnown RBP19.68■□□□□ 0.74
LDHA-215ENST00000537296 MRC2Q9UBG0 1479 aa19.68■□□□□ 0.74
LDHA-215ENST00000537296 WDR62O43379 1518 aa19.64■□□□□ 0.73
LDHA-215ENST00000537296 FOXD1Q16676 465 aa19.58■□□□□ 0.73
LDHA-215ENST00000537296 URB2Q14146 1524 aaKnown RBP19.57■□□□□ 0.72
LDHA-215ENST00000537296 TOPBP1Q92547 1522 aa19.41■□□□□ 0.7
LDHA-215ENST00000537296 DNMBPQ6XZF7 1577 aa19.37■□□□□ 0.69
LDHA-215ENST00000537296 DNAJC5Q9H3Z4 198 aa19.31■□□□□ 0.68
LDHA-215ENST00000537296 ABCC8Q09428 1581 aa19.31■□□□□ 0.68
LDHA-215ENST00000537296 ZNF608Q9ULD9 1512 aaPredicted RBP19.27■□□□□ 0.68
LDHA-215ENST00000537296 CUX1P39880 1505 aa19.26■□□□□ 0.67
LDHA-215ENST00000537296 IFT140Q96RY7 1462 aa19.26■□□□□ 0.67
LDHA-215ENST00000537296 POLA1P09884 1462 aaPredicted RBP19.25■□□□□ 0.67
LDHA-215ENST00000537296 TARBP1Q13395 1621 aaKnown RBP19.23■□□□□ 0.67
LDHA-215ENST00000537296 FGD5Q6ZNL6 1462 aa19.19■□□□□ 0.66
LDHA-215ENST00000537296 RAD54L2Q9Y4B4 1467 aa19.19■□□□□ 0.66
LDHA-215ENST00000537296 EIF4G3O43432 1585 aaKnown RBP19.18■□□□□ 0.66
LDHA-215ENST00000537296 AQRO60306 1485 aaKnown RBP eCLIP19.13■□□□□ 0.652e-8■■■■□ 26.4
LDHA-215ENST00000537296 SOGA1O94964 1423 aa19.13■□□□□ 0.65
LDHA-215ENST00000537296 SYNJ1O43426 1573 aa19.09■□□□□ 0.65
LDHA-215ENST00000537296 TDRD9Q8NDG6 1382 aaKnown RBP19.07■□□□□ 0.64
LDHA-215ENST00000537296 WDR97A6NE52 1622 aa19.07■□□□□ 0.64
LDHA-215ENST00000537296 BIVM-ERCC5R4GMW8 1640 aa19.06■□□□□ 0.64
LDHA-215ENST00000537296 WRNQ14191 1432 aaPredicted RBP eCLIP19.05■□□□□ 0.64
LDHA-215ENST00000537296 TOP2BQ02880 1626 aa19.05■□□□□ 0.64
LDHA-215ENST00000537296 CHD1O14646 1710 aa18.98■□□□□ 0.63
LDHA-215ENST00000537296 ABCA10Q8WWZ4 1543 aa18.96■□□□□ 0.63
LDHA-215ENST00000537296 ADRA2BP18089 450 aa18.96■□□□□ 0.63
LDHA-215ENST00000537296 OSCARQ8IYS5 282 aa18.96■□□□□ 0.63
LDHA-215ENST00000537296 PPP6R1Q9UPN7 881 aa18.96■□□□□ 0.63
LDHA-215ENST00000537296 PBRM1Q86U86 1689 aa18.95■□□□□ 0.62
LDHA-215ENST00000537296 ABCA5Q8WWZ7 1642 aa18.95■□□□□ 0.62
LDHA-215ENST00000537296 SNAPC4Q5SXM2 1469 aa18.94■□□□□ 0.62
LDHA-215ENST00000537296 GAPVD1Q14C86 1478 aa18.91■□□□□ 0.62
LDHA-215ENST00000537296 GRIN2BQ13224 1484 aa18.91■□□□□ 0.62
LDHA-215ENST00000537296 FBLN2P98095 1184 aa18.89■□□□□ 0.61
LDHA-215ENST00000537296 MAGI1Q96QZ7 1491 aaPredicted RBP18.86■□□□□ 0.61
LDHA-215ENST00000537296 SYNJ2O15056 1496 aa18.8■□□□□ 0.6
LDHA-215ENST00000537296 CHMP7Q8WUX9 453 aaPredicted RBP18.78■□□□□ 0.6
LDHA-215ENST00000537296 RIMBP3CA6NJZ7 1639 aa18.77■□□□□ 0.59
LDHA-215ENST00000537296 RIMBP3BA6NNM3 1639 aa18.77■□□□□ 0.59
LDHA-215ENST00000537296 RIMBP3Q9UFD9 1639 aa18.77■□□□□ 0.59
LDHA-215ENST00000537296 ADAMTS12P58397 1594 aa18.76■□□□□ 0.59
LDHA-215ENST00000537296 ARHGEF11O15085 1522 aa18.73■□□□□ 0.59
LDHA-215ENST00000537296 ERICH3Q5RHP9 1530 aa18.73■□□□□ 0.59
LDHA-215ENST00000537296 CLASP1Q7Z460 1538 aa18.73■□□□□ 0.59
LDHA-215ENST00000537296 GRIN2AQ12879 1464 aa18.69■□□□□ 0.58
LDHA-215ENST00000537296 TRIM41Q8WV44 630 aa18.69■□□□□ 0.58
LDHA-215ENST00000537296 FHAD1B1AJZ9 1412 aa18.67■□□□□ 0.58
LDHA-215ENST00000537296 CEP170Q5SW79 1584 aa18.65■□□□□ 0.58
LDHA-215ENST00000537296 KIF27Q86VH2 1401 aa18.63■□□□□ 0.57
LDHA-215ENST00000537296 IGF1RP08069 1367 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 233.7 ms