RNA–Protein interactions for RNA: ENST00000536797.5

LPCAT3-204, Transcript of lysophosphatidylcholine acyltransferase 3, humanhuman

TSL 2

Gene LPCAT3, Length 1,412 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LPCAT3-204ENST00000536797 NISCHQ9Y2I1 1504 aa50.71■■■■■ 5.71
LPCAT3-204ENST00000536797 CCDC180Q9P1Z9 1646 aa45.06■■■■■ 4.8
LPCAT3-204ENST00000536797 ABCC9O60706 1549 aa43.93■■■■■ 4.62
LPCAT3-204ENST00000536797 RB1CC1Q8TDY2 1594 aa42.35■■■■■ 4.37
LPCAT3-204ENST00000536797 NACADO15069 1562 aa42.32■■■■■ 4.37
LPCAT3-204ENST00000536797 DCAF8L2P0C7V8 631 aa42.32■■■■■ 4.37
LPCAT3-204ENST00000536797 ZCCHC6Q5VYS8 1495 aaKnown RBP42.28■■■■■ 4.36
LPCAT3-204ENST00000536797 MYO15BQ96JP2 1530 aa42.1■■■■■ 4.33
LPCAT3-204ENST00000536797 DCAF1Q9Y4B6 1507 aa41.97■■■■■ 4.31
LPCAT3-204ENST00000536797 UNC13AQ9UPW8 1703 aa41.4■■■■■ 4.22
LPCAT3-204ENST00000536797 SCRIBQ14160 1630 aa41.12■■■■■ 4.17
LPCAT3-204ENST00000536797 PABPN1Q86U42 306 aaKnown RBP eCLIP41.05■■■■■ 4.16
LPCAT3-204ENST00000536797 BICRAQ9NZM4 1560 aa41.03■■■■■ 4.16
LPCAT3-204ENST00000536797 SHROOM4Q9ULL8 1493 aa40.64■■■■■ 4.1
LPCAT3-204ENST00000536797 DNAJC5BQ9UF47 199 aa40.13■■■■■ 4.01
LPCAT3-204ENST00000536797 EIF4G1Q04637 1599 aaKnown RBP39.95■■■■□ 3.99
LPCAT3-204ENST00000536797 CC2D2AQ9P2K1 1620 aa39.76■■■■□ 3.96
LPCAT3-204ENST00000536797 CECR2Q9BXF3 1484 aa39.47■■■■□ 3.91
LPCAT3-204ENST00000536797 SMARCA4P51532 1647 aa39.34■■■■□ 3.89
LPCAT3-204ENST00000536797 BAZ1AQ9NRL2 1556 aaPredicted RBP39.32■■■■□ 3.88
LPCAT3-204ENST00000536797 MROH2BQ7Z745 1585 aa39.08■■■■□ 3.85
LPCAT3-204ENST00000536797 ATAD2BQ9ULI0 1458 aa39.07■■■■□ 3.84
LPCAT3-204ENST00000536797 SMARCA2P51531 1590 aa39.05■■■■□ 3.84
LPCAT3-204ENST00000536797 NCAPD3P42695 1498 aa39.02■■■■□ 3.84
LPCAT3-204ENST00000536797 PEG3Q9GZU2 1588 aa38.94■■■■□ 3.82
LPCAT3-204ENST00000536797 HMGXB3Q12766 1538 aa38.88■■■■□ 3.81
LPCAT3-204ENST00000536797 BAZ1BQ9UIG0 1483 aaKnown RBP38.78■■■■□ 3.8
LPCAT3-204ENST00000536797 WIZO95785 1651 aa38.69■■■■□ 3.78
LPCAT3-204ENST00000536797 RSF1Q96T23 1441 aaPredicted RBP38.67■■■■□ 3.78
LPCAT3-204ENST00000536797 TOP2AP11388 1531 aaKnown RBP38.29■■■■□ 3.72
LPCAT3-204ENST00000536797 NESP48681 1621 aa38.04■■■■□ 3.68
LPCAT3-204ENST00000536797 LAMC3Q9Y6N6 1575 aa38.01■■■■□ 3.68
LPCAT3-204ENST00000536797 CADPSQ9ULU8 1353 aa37.9■■■■□ 3.66
LPCAT3-204ENST00000536797 ERCC6Q03468 1493 aa37.89■■■■□ 3.66
LPCAT3-204ENST00000536797 CCDC88BA6NC98 1476 aa37.81■■■■□ 3.64
LPCAT3-204ENST00000536797 SUPT5HO00267 1087 aaKnown RBP37.81■■■■□ 3.64
LPCAT3-204ENST00000536797 PDS5BQ9NTI5 1447 aa37.74■■■■□ 3.63
LPCAT3-204ENST00000536797 CFTRP13569 1480 aa37.7■■■■□ 3.63
LPCAT3-204ENST00000536797 KIF21AQ7Z4S6 1674 aa37.64■■■■□ 3.62
LPCAT3-204ENST00000536797 PRDM2Q13029 1718 aa37.5■■■■□ 3.59
LPCAT3-204ENST00000536797 FANCD2Q9BXW9 1451 aa37.47■■■■□ 3.59
LPCAT3-204ENST00000536797 THOC2Q8NI27 1593 aaKnown RBP37.47■■■■□ 3.59
LPCAT3-204ENST00000536797 CEP164Q9UPV0 1460 aa37.43■■■■□ 3.58
LPCAT3-204ENST00000536797 CUX2O14529 1486 aa37.43■■■■□ 3.58
LPCAT3-204ENST00000536797 MRC2Q9UBG0 1479 aa37.34■■■■□ 3.57
LPCAT3-204ENST00000536797 WDR62O43379 1518 aa37.22■■■■□ 3.55
LPCAT3-204ENST00000536797 URB2Q14146 1524 aaKnown RBP37.07■■■■□ 3.53
LPCAT3-204ENST00000536797 ABCC8Q09428 1581 aa36.92■■■■□ 3.5
LPCAT3-204ENST00000536797 TOPBP1Q92547 1522 aa36.89■■■■□ 3.5
LPCAT3-204ENST00000536797 DNMBPQ6XZF7 1577 aa36.88■■■■□ 3.49
LPCAT3-204ENST00000536797 CUX1P39880 1505 aa36.65■■■■□ 3.46
LPCAT3-204ENST00000536797 IFT140Q96RY7 1462 aa36.63■■■■□ 3.45
LPCAT3-204ENST00000536797 POLA1P09884 1462 aaPredicted RBP36.59■■■■□ 3.45
LPCAT3-204ENST00000536797 FGD5Q6ZNL6 1462 aa36.52■■■■□ 3.44
LPCAT3-204ENST00000536797 WRNQ14191 1432 aaPredicted RBP eCLIP36.49■■■■□ 3.43
LPCAT3-204ENST00000536797 TARBP1Q13395 1621 aaKnown RBP36.48■■■■□ 3.43
LPCAT3-204ENST00000536797 SOGA1O94964 1423 aa36.43■■■■□ 3.42
LPCAT3-204ENST00000536797 ZNF608Q9ULD9 1512 aaPredicted RBP36.43■■■■□ 3.42
LPCAT3-204ENST00000536797 RAD54L2Q9Y4B4 1467 aa36.41■■■■□ 3.42
LPCAT3-204ENST00000536797 BIVM-ERCC5R4GMW8 1640 aa36.41■■■■□ 3.42
LPCAT3-204ENST00000536797 TOP2BQ02880 1626 aa36.4■■■■□ 3.42
LPCAT3-204ENST00000536797 SYNJ1O43426 1573 aa36.39■■■■□ 3.42
LPCAT3-204ENST00000536797 EIF4G3O43432 1585 aaKnown RBP36.33■■■■□ 3.41
LPCAT3-204ENST00000536797 AQRO60306 1485 aaKnown RBP eCLIP36.25■■■■□ 3.393e-6■■■■□ 23.3
LPCAT3-204ENST00000536797 WDR97A6NE52 1622 aa36.24■■■■□ 3.39
LPCAT3-204ENST00000536797 TDRD9Q8NDG6 1382 aaKnown RBP36.2■■■■□ 3.39
LPCAT3-204ENST00000536797 ABCA10Q8WWZ4 1543 aa36.17■■■■□ 3.38
LPCAT3-204ENST00000536797 DNAJC5Q9H3Z4 198 aa36.07■■■■□ 3.36
LPCAT3-204ENST00000536797 GAPVD1Q14C86 1478 aa36.03■■■■□ 3.36
LPCAT3-204ENST00000536797 ABCA5Q8WWZ7 1642 aa36.03■■■■□ 3.36
LPCAT3-204ENST00000536797 GRIN2BQ13224 1484 aa36■■■■□ 3.35
LPCAT3-204ENST00000536797 PBRM1Q86U86 1689 aa35.98■■■■□ 3.35
LPCAT3-204ENST00000536797 SNAPC4Q5SXM2 1469 aa35.94■■■■□ 3.34
LPCAT3-204ENST00000536797 MAGI1Q96QZ7 1491 aaPredicted RBP35.9■■■■□ 3.34
LPCAT3-204ENST00000536797 OSCARQ8IYS5 282 aa35.88■■■■□ 3.33
LPCAT3-204ENST00000536797 CHD1O14646 1710 aa35.86■■■■□ 3.33
LPCAT3-204ENST00000536797 FBLN2P98095 1184 aa35.81■■■■□ 3.32
LPCAT3-204ENST00000536797 SYNJ2O15056 1496 aa35.76■■■■□ 3.32
LPCAT3-204ENST00000536797 ERICH3Q5RHP9 1530 aa35.76■■■■□ 3.31
LPCAT3-204ENST00000536797 CHMP7Q8WUX9 453 aaPredicted RBP35.74■■■■□ 3.31
LPCAT3-204ENST00000536797 TRIM41Q8WV44 630 aa35.72■■■■□ 3.31
LPCAT3-204ENST00000536797 KIF27Q86VH2 1401 aa35.71■■■■□ 3.31
LPCAT3-204ENST00000536797 ADAMTS12P58397 1594 aa35.68■■■■□ 3.3
LPCAT3-204ENST00000536797 FHAD1B1AJZ9 1412 aa35.62■■■■□ 3.29
LPCAT3-204ENST00000536797 GRIN2AQ12879 1464 aa35.54■■■■□ 3.28
LPCAT3-204ENST00000536797 IGF1RP08069 1367 aa35.52■■■■□ 3.28
LPCAT3-204ENST00000536797 CUL7Q14999 1698 aa35.48■■■■□ 3.27
LPCAT3-204ENST00000536797 CLASP1Q7Z460 1538 aa35.44■■■■□ 3.26
LPCAT3-204ENST00000536797 RUSC2Q8N2Y8 1516 aa35.41■■■■□ 3.26
LPCAT3-204ENST00000536797 CEP170Q5SW79 1584 aa35.36■■■■□ 3.25
LPCAT3-204ENST00000536797 NUP160Q12769 1436 aa35.36■■■■□ 3.25
LPCAT3-204ENST00000536797 CHIC1Q5VXU3 224 aa35.34■■■■□ 3.25
LPCAT3-204ENST00000536797 CARMIL1Q5VZK9 1371 aa35.34■■■■□ 3.25
LPCAT3-204ENST00000536797 RIMBP3CA6NJZ7 1639 aa35.31■■■■□ 3.24
LPCAT3-204ENST00000536797 RIMBP3BA6NNM3 1639 aa35.31■■■■□ 3.24
LPCAT3-204ENST00000536797 RIMBP3Q9UFD9 1639 aa35.31■■■■□ 3.24
LPCAT3-204ENST00000536797 ARHGEF11O15085 1522 aa35.31■■■■□ 3.24
LPCAT3-204ENST00000536797 RAPGEF2Q9Y4G8 1499 aa35.16■■■■□ 3.22
LPCAT3-204ENST00000536797 EEA1Q15075 1411 aa35.13■■■■□ 3.21
LPCAT3-204ENST00000536797 SHROOM2Q13796 1616 aa35.1■■■■□ 3.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms