RNA–Protein interactions for RNA: ENST00000536079.5

DDX55-204, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 765 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-204ENST00000536079 NISCHQ9Y2I1 1504 aa43.32■■■■■ 4.52
DDX55-204ENST00000536079 CCDC180Q9P1Z9 1646 aa38.31■■■■□ 3.72
DDX55-204ENST00000536079 ABCC9O60706 1549 aa37.54■■■■□ 3.6
DDX55-204ENST00000536079 DCAF8L2P0C7V8 631 aa36.2■■■■□ 3.39
DDX55-204ENST00000536079 ZCCHC6Q5VYS8 1495 aaKnown RBP36.11■■■■□ 3.37
DDX55-204ENST00000536079 NACADO15069 1562 aa36.02■■■■□ 3.36
DDX55-204ENST00000536079 RB1CC1Q8TDY2 1594 aa36.02■■■■□ 3.36
DDX55-204ENST00000536079 MYO15BQ96JP2 1530 aa35.84■■■■□ 3.33
DDX55-204ENST00000536079 DCAF1Q9Y4B6 1507 aa35.77■■■■□ 3.32
DDX55-204ENST00000536079 UNC13AQ9UPW8 1703 aa35.26■■■■□ 3.24
DDX55-204ENST00000536079 PABPN1Q86U42 306 aaKnown RBP eCLIP35.18■■■■□ 3.22
DDX55-204ENST00000536079 SCRIBQ14160 1630 aa35.11■■■■□ 3.21
DDX55-204ENST00000536079 BICRAQ9NZM4 1560 aa35.07■■■■□ 3.2
DDX55-204ENST00000536079 SHROOM4Q9ULL8 1493 aa34.51■■■■□ 3.11
DDX55-204ENST00000536079 DNAJC5BQ9UF47 199 aa34.48■■■■□ 3.11
DDX55-204ENST00000536079 EIF4G1Q04637 1599 aaKnown RBP34.07■■■■□ 3.05
DDX55-204ENST00000536079 CC2D2AQ9P2K1 1620 aa33.91■■■■□ 3.02
DDX55-204ENST00000536079 CECR2Q9BXF3 1484 aa33.83■■■■□ 3.01
DDX55-204ENST00000536079 SMARCA4P51532 1647 aa33.55■■■□□ 2.96
DDX55-204ENST00000536079 BAZ1AQ9NRL2 1556 aaPredicted RBP33.49■■■□□ 2.95
DDX55-204ENST00000536079 MROH2BQ7Z745 1585 aa33.45■■■□□ 2.95
DDX55-204ENST00000536079 ATAD2BQ9ULI0 1458 aa33.38■■■□□ 2.93
DDX55-204ENST00000536079 NCAPD3P42695 1498 aa33.31■■■□□ 2.92
DDX55-204ENST00000536079 SMARCA2P51531 1590 aa33.24■■■□□ 2.91
DDX55-204ENST00000536079 PEG3Q9GZU2 1588 aa33.19■■■□□ 2.9
DDX55-204ENST00000536079 RSF1Q96T23 1441 aaPredicted RBP33.11■■■□□ 2.89
DDX55-204ENST00000536079 HMGXB3Q12766 1538 aa33.1■■■□□ 2.89
DDX55-204ENST00000536079 WIZO95785 1651 aa33.07■■■□□ 2.88
DDX55-204ENST00000536079 BAZ1BQ9UIG0 1483 aaKnown RBP33.06■■■□□ 2.88
DDX55-204ENST00000536079 TOP2AP11388 1531 aaKnown RBP32.67■■■□□ 2.82
DDX55-204ENST00000536079 NESP48681 1621 aa32.57■■■□□ 2.8
DDX55-204ENST00000536079 SUPT5HO00267 1087 aaKnown RBP32.41■■■□□ 2.78
DDX55-204ENST00000536079 CADPSQ9ULU8 1353 aa32.36■■■□□ 2.77
DDX55-204ENST00000536079 CCDC88BA6NC98 1476 aa32.35■■■□□ 2.77
DDX55-204ENST00000536079 LAMC3Q9Y6N6 1575 aa32.33■■■□□ 2.77
DDX55-204ENST00000536079 ERCC6Q03468 1493 aa32.25■■■□□ 2.75
DDX55-204ENST00000536079 CFTRP13569 1480 aa32.19■■■□□ 2.74
DDX55-204ENST00000536079 PDS5BQ9NTI5 1447 aa32.14■■■□□ 2.74
DDX55-204ENST00000536079 KIF21AQ7Z4S6 1674 aa32.07■■■□□ 2.72
DDX55-204ENST00000536079 FANCD2Q9BXW9 1451 aa31.98■■■□□ 2.71
DDX55-204ENST00000536079 THOC2Q8NI27 1593 aaKnown RBP31.94■■■□□ 2.7
DDX55-204ENST00000536079 CEP164Q9UPV0 1460 aa31.89■■■□□ 2.7
DDX55-204ENST00000536079 CUX2O14529 1486 aa31.83■■■□□ 2.69
DDX55-204ENST00000536079 MRC2Q9UBG0 1479 aa31.83■■■□□ 2.69
DDX55-204ENST00000536079 PRDM2Q13029 1718 aa31.82■■■□□ 2.68
DDX55-204ENST00000536079 WDR62O43379 1518 aa31.72■■■□□ 2.67
DDX55-204ENST00000536079 URB2Q14146 1524 aaKnown RBP31.7■■■□□ 2.67
DDX55-204ENST00000536079 TOPBP1Q92547 1522 aa31.5■■■□□ 2.63
DDX55-204ENST00000536079 DNMBPQ6XZF7 1577 aa31.43■■■□□ 2.62
DDX55-204ENST00000536079 ABCC8Q09428 1581 aa31.38■■■□□ 2.61
DDX55-204ENST00000536079 CUX1P39880 1505 aa31.36■■■□□ 2.61
DDX55-204ENST00000536079 POLA1P09884 1462 aaPredicted RBP31.25■■■□□ 2.59
DDX55-204ENST00000536079 IFT140Q96RY7 1462 aa31.22■■■□□ 2.59
DDX55-204ENST00000536079 FGD5Q6ZNL6 1462 aa31.2■■■□□ 2.58
DDX55-204ENST00000536079 ZNF608Q9ULD9 1512 aaPredicted RBP31.19■■■□□ 2.58
DDX55-204ENST00000536079 RAD54L2Q9Y4B4 1467 aa31.18■■■□□ 2.58
DDX55-204ENST00000536079 WRNQ14191 1432 aaPredicted RBP eCLIP31.15■■■□□ 2.58
DDX55-204ENST00000536079 TARBP1Q13395 1621 aaKnown RBP31.13■■■□□ 2.57
DDX55-204ENST00000536079 SOGA1O94964 1423 aa31.12■■■□□ 2.57
DDX55-204ENST00000536079 SYNJ1O43426 1573 aa31.12■■■□□ 2.57
DDX55-204ENST00000536079 TOP2BQ02880 1626 aa31.05■■■□□ 2.56
DDX55-204ENST00000536079 BIVM-ERCC5R4GMW8 1640 aa31.02■■■□□ 2.56
DDX55-204ENST00000536079 AQRO60306 1485 aaKnown RBP eCLIP31.02■■■□□ 2.561e-6■■■■■ 42.9
DDX55-204ENST00000536079 TDRD9Q8NDG6 1382 aaKnown RBP30.99■■■□□ 2.55
DDX55-204ENST00000536079 EIF4G3O43432 1585 aaKnown RBP30.96■■■□□ 2.55
DDX55-204ENST00000536079 ABCA10Q8WWZ4 1543 aa30.88■■■□□ 2.53
DDX55-204ENST00000536079 WDR97A6NE52 1622 aa30.87■■■□□ 2.53
DDX55-204ENST00000536079 DNAJC5Q9H3Z4 198 aa30.79■■■□□ 2.52
DDX55-204ENST00000536079 GAPVD1Q14C86 1478 aa30.74■■■□□ 2.51
DDX55-204ENST00000536079 ABCA5Q8WWZ7 1642 aa30.73■■■□□ 2.51
DDX55-204ENST00000536079 GRIN2BQ13224 1484 aa30.7■■■□□ 2.5
DDX55-204ENST00000536079 SNAPC4Q5SXM2 1469 aa30.69■■■□□ 2.5
DDX55-204ENST00000536079 PBRM1Q86U86 1689 aa30.61■■■□□ 2.49
DDX55-204ENST00000536079 OSCARQ8IYS5 282 aa30.6■■■□□ 2.49
DDX55-204ENST00000536079 FBLN2P98095 1184 aa30.58■■■□□ 2.49
DDX55-204ENST00000536079 MAGI1Q96QZ7 1491 aaPredicted RBP30.57■■■□□ 2.48
DDX55-204ENST00000536079 CHD1O14646 1710 aa30.53■■■□□ 2.48
DDX55-204ENST00000536079 TRIM41Q8WV44 630 aa30.53■■■□□ 2.48
DDX55-204ENST00000536079 CHMP7Q8WUX9 453 aaPredicted RBP30.48■■■□□ 2.47
DDX55-204ENST00000536079 SYNJ2O15056 1496 aa30.48■■■□□ 2.47
DDX55-204ENST00000536079 ERICH3Q5RHP9 1530 aa30.46■■■□□ 2.47
DDX55-204ENST00000536079 KIF27Q86VH2 1401 aa30.46■■■□□ 2.47
DDX55-204ENST00000536079 ADAMTS12P58397 1594 aa30.43■■■□□ 2.46
DDX55-204ENST00000536079 IGF1RP08069 1367 aa30.42■■■□□ 2.46
DDX55-204ENST00000536079 RUSC2Q8N2Y8 1516 aa30.41■■■□□ 2.46
DDX55-204ENST00000536079 FHAD1B1AJZ9 1412 aa30.38■■■□□ 2.45
DDX55-204ENST00000536079 CHIC1Q5VXU3 224 aa30.35■■■□□ 2.45
DDX55-204ENST00000536079 GRIN2AQ12879 1464 aa30.31■■■□□ 2.44
DDX55-204ENST00000536079 CLASP1Q7Z460 1538 aa30.25■■■□□ 2.43
DDX55-204ENST00000536079 CEP170Q5SW79 1584 aa30.2■■■□□ 2.43
DDX55-204ENST00000536079 NUP160Q12769 1436 aa30.2■■■□□ 2.42
DDX55-204ENST00000536079 CARMIL1Q5VZK9 1371 aa30.19■■■□□ 2.42
DDX55-204ENST00000536079 CUL7Q14999 1698 aa30.17■■■□□ 2.42
DDX55-204ENST00000536079 ARHGEF11O15085 1522 aa30.11■■■□□ 2.41
DDX55-204ENST00000536079 RIMBP3CA6NJZ7 1639 aa30.1■■■□□ 2.41
DDX55-204ENST00000536079 RIMBP3BA6NNM3 1639 aa30.1■■■□□ 2.41
DDX55-204ENST00000536079 RIMBP3Q9UFD9 1639 aa30.1■■■□□ 2.41
DDX55-204ENST00000536079 FAM9AQ8IZU1 332 aaPredicted RBP30■■■□□ 2.39
DDX55-204ENST00000536079 RAPGEF2Q9Y4G8 1499 aa29.99■■■□□ 2.39
DDX55-204ENST00000536079 CSRNP3Q8WYN3 585 aa29.98■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 98.6 ms