RNA–Protein interactions for RNA: ENST00000535810.1

CHD4-204, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 607 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-204ENST00000535810 NISCHQ9Y2I1 1504 aa21.85■■□□□ 1.09
CHD4-204ENST00000535810 AEBP2Q6ZN18 517 aaPredicted RBP21.23■□□□□ 0.99
CHD4-204ENST00000535810 CHIC1Q5VXU3 224 aa20.97■□□□□ 0.95
CHD4-204ENST00000535810 CCDC180Q9P1Z9 1646 aa19.49■□□□□ 0.71
CHD4-204ENST00000535810 ABCC9O60706 1549 aa19.25■□□□□ 0.67
CHD4-204ENST00000535810 DNAJC5BQ9UF47 199 aa18.65■□□□□ 0.58
CHD4-204ENST00000535810 PHF23Q9BUL5 403 aaPredicted RBP18.53■□□□□ 0.56
CHD4-204ENST00000535810 RB1CC1Q8TDY2 1594 aa18.42■□□□□ 0.54
CHD4-204ENST00000535810 NACADO15069 1562 aa18.36■□□□□ 0.53
CHD4-204ENST00000535810 DCAF8L2P0C7V8 631 aa18.26■□□□□ 0.51
CHD4-204ENST00000535810 MYO15BQ96JP2 1530 aa18.22■□□□□ 0.51
CHD4-204ENST00000535810 ZCCHC6Q5VYS8 1495 aaKnown RBP18.18■□□□□ 0.5
CHD4-204ENST00000535810 DCAF1Q9Y4B6 1507 aa18.07■□□□□ 0.48
CHD4-204ENST00000535810 UNC13AQ9UPW8 1703 aa17.99■□□□□ 0.47
CHD4-204ENST00000535810 PABPN1Q86U42 306 aaKnown RBP eCLIP17.93■□□□□ 0.46
CHD4-204ENST00000535810 BICRAQ9NZM4 1560 aa17.89■□□□□ 0.45
CHD4-204ENST00000535810 SENP3Q9H4L4 574 aaPredicted RBP17.88■□□□□ 0.45
CHD4-204ENST00000535810 SCRIBQ14160 1630 aa17.78■□□□□ 0.44
CHD4-204ENST00000535810 SHROOM4Q9ULL8 1493 aa17.69■□□□□ 0.42
CHD4-204ENST00000535810 DNAJC5Q9H3Z4 198 aa17.61■□□□□ 0.41
CHD4-204ENST00000535810 CECR2Q9BXF3 1484 aa17.44■□□□□ 0.38
CHD4-204ENST00000535810 EIF4G1Q04637 1599 aaKnown RBP17.43■□□□□ 0.38
CHD4-204ENST00000535810 CC2D2AQ9P2K1 1620 aa17.39■□□□□ 0.37
CHD4-204ENST00000535810 PLPPR3Q6T4P5 718 aa17.15■□□□□ 0.34
CHD4-204ENST00000535810 SMARCA4P51532 1647 aa16.99■□□□□ 0.31
CHD4-204ENST00000535810 NCAPD3P42695 1498 aa16.95■□□□□ 0.3
CHD4-204ENST00000535810 ATAD2BQ9ULI0 1458 aa16.94■□□□□ 0.3
CHD4-204ENST00000535810 BAZ1AQ9NRL2 1556 aaPredicted RBP16.94■□□□□ 0.3
CHD4-204ENST00000535810 SMARCA2P51531 1590 aa16.9■□□□□ 0.3
CHD4-204ENST00000535810 CUX2O14529 1486 aa16.89■□□□□ 0.29
CHD4-204ENST00000535810 HMGXB3Q12766 1538 aa16.86■□□□□ 0.29
CHD4-204ENST00000535810 MROH2BQ7Z745 1585 aa16.84■□□□□ 0.29
CHD4-204ENST00000535810 PEG3Q9GZU2 1588 aa16.84■□□□□ 0.29
CHD4-204ENST00000535810 BAZ1BQ9UIG0 1483 aaKnown RBP16.79■□□□□ 0.28
CHD4-204ENST00000535810 ERCC6Q03468 1493 aa16.69■□□□□ 0.26
CHD4-204ENST00000535810 WIZO95785 1651 aa16.62■□□□□ 0.25
CHD4-204ENST00000535810 FOXD1Q16676 465 aa16.62■□□□□ 0.25
CHD4-204ENST00000535810 NESP48681 1621 aa16.6■□□□□ 0.25
CHD4-204ENST00000535810 RSF1Q96T23 1441 aaPredicted RBP16.58■□□□□ 0.24
CHD4-204ENST00000535810 LAMC3Q9Y6N6 1575 aa16.52■□□□□ 0.24
CHD4-204ENST00000535810 TRIM41Q8WV44 630 aa16.52■□□□□ 0.24
CHD4-204ENST00000535810 TOP2AP11388 1531 aaKnown RBP16.46■□□□□ 0.23
CHD4-204ENST00000535810 CADPSQ9ULU8 1353 aa16.44■□□□□ 0.22
CHD4-204ENST00000535810 PDS5BQ9NTI5 1447 aa16.41■□□□□ 0.22
CHD4-204ENST00000535810 THOC2Q8NI27 1593 aaKnown RBP16.39■□□□□ 0.21
CHD4-204ENST00000535810 KIF21AQ7Z4S6 1674 aa16.39■□□□□ 0.21
CHD4-204ENST00000535810 CFTRP13569 1480 aa16.32■□□□□ 0.2
CHD4-204ENST00000535810 ADRA2BP18089 450 aa16.29■□□□□ 0.2
CHD4-204ENST00000535810 PPP6R1Q9UPN7 881 aa16.28■□□□□ 0.2
CHD4-204ENST00000535810 MRC2Q9UBG0 1479 aa16.28■□□□□ 0.2
CHD4-204ENST00000535810 FANCD2Q9BXW9 1451 aa16.26■□□□□ 0.19
CHD4-204ENST00000535810 CEP164Q9UPV0 1460 aa16.26■□□□□ 0.19
CHD4-204ENST00000535810 CCDC88BA6NC98 1476 aa16.25■□□□□ 0.19
CHD4-204ENST00000535810 WDR62O43379 1518 aa16.24■□□□□ 0.19
CHD4-204ENST00000535810 PRDM2Q13029 1718 aa16.16■□□□□ 0.18
CHD4-204ENST00000535810 URB2Q14146 1524 aaKnown RBP16.12■□□□□ 0.17
CHD4-204ENST00000535810 OSCARQ8IYS5 282 aa16.08■□□□□ 0.16
CHD4-204ENST00000535810 TOPBP1Q92547 1522 aa15.99■□□□□ 0.15
CHD4-204ENST00000535810 SUPT5HO00267 1087 aaKnown RBP15.98■□□□□ 0.15
CHD4-204ENST00000535810 ABCC8Q09428 1581 aa15.95■□□□□ 0.14
CHD4-204ENST00000535810 DNMBPQ6XZF7 1577 aa15.95■□□□□ 0.14
CHD4-204ENST00000535810 IFT140Q96RY7 1462 aa15.92■□□□□ 0.14
CHD4-204ENST00000535810 ZNF608Q9ULD9 1512 aaPredicted RBP15.88■□□□□ 0.13
CHD4-204ENST00000535810 POLA1P09884 1462 aaPredicted RBP15.84■□□□□ 0.13
CHD4-204ENST00000535810 TARBP1Q13395 1621 aaKnown RBP15.83■□□□□ 0.12
CHD4-204ENST00000535810 EIF4G3O43432 1585 aaKnown RBP15.81■□□□□ 0.12
CHD4-204ENST00000535810 CUX1P39880 1505 aa15.8■□□□□ 0.12
CHD4-204ENST00000535810 RIMBP3CA6NJZ7 1639 aa15.78■□□□□ 0.12
CHD4-204ENST00000535810 RIMBP3BA6NNM3 1639 aa15.78■□□□□ 0.12
CHD4-204ENST00000535810 RIMBP3Q9UFD9 1639 aa15.78■□□□□ 0.12
CHD4-204ENST00000535810 FGD5Q6ZNL6 1462 aa15.78■□□□□ 0.12
CHD4-204ENST00000535810 RAD54L2Q9Y4B4 1467 aa15.77■□□□□ 0.11
CHD4-204ENST00000535810 PIAS4Q8N2W9 510 aaPredicted RBP15.75■□□□□ 0.11
CHD4-204ENST00000535810 AQRO60306 1485 aaKnown RBP eCLIP15.75■□□□□ 0.112e-7■■■■□ 22
CHD4-204ENST00000535810 SOGA1O94964 1423 aa15.75■□□□□ 0.11
CHD4-204ENST00000535810 ARHGEF11O15085 1522 aa15.73■□□□□ 0.11
CHD4-204ENST00000535810 TRHP20396 242 aaPredicted RBP15.71■□□□□ 0.11
CHD4-204ENST00000535810 CYB5RLQ6IPT4 315 aa15.71■□□□□ 0.11
CHD4-204ENST00000535810 TDRD9Q8NDG6 1382 aaKnown RBP15.69■□□□□ 0.1
CHD4-204ENST00000535810 WDR97A6NE52 1622 aa15.68■□□□□ 0.1
CHD4-204ENST00000535810 WRNQ14191 1432 aaPredicted RBP eCLIP15.63■□□□□ 0.09
CHD4-204ENST00000535810 CHD1O14646 1710 aa15.62■□□□□ 0.09
CHD4-204ENST00000535810 ABCA10Q8WWZ4 1543 aa15.62■□□□□ 0.09
CHD4-204ENST00000535810 SYNJ1O43426 1573 aa15.62■□□□□ 0.09
CHD4-204ENST00000535810 TOP2BQ02880 1626 aa15.61■□□□□ 0.09
CHD4-204ENST00000535810 SNAPC4Q5SXM2 1469 aa15.61■□□□□ 0.09
CHD4-204ENST00000535810 BIVM-ERCC5R4GMW8 1640 aa15.61■□□□□ 0.09
CHD4-204ENST00000535810 GRIN2BQ13224 1484 aa15.59■□□□□ 0.09
CHD4-204ENST00000535810 MAGI1Q96QZ7 1491 aaPredicted RBP15.59■□□□□ 0.09
CHD4-204ENST00000535810 GAPVD1Q14C86 1478 aa15.58■□□□□ 0.08
CHD4-204ENST00000535810 ABCA5Q8WWZ7 1642 aa15.57■□□□□ 0.08
CHD4-204ENST00000535810 FBLN2P98095 1184 aa15.56■□□□□ 0.08
CHD4-204ENST00000535810 PBRM1Q86U86 1689 aa15.54■□□□□ 0.08
CHD4-204ENST00000535810 SYNJ2O15056 1496 aa15.52■□□□□ 0.08
CHD4-204ENST00000535810 ARAP1Q96P48 1450 aa15.52■□□□□ 0.08
CHD4-204ENST00000535810 CHMP7Q8WUX9 453 aaPredicted RBP15.5■□□□□ 0.07
CHD4-204ENST00000535810 CLASP1Q7Z460 1538 aa15.47■□□□□ 0.07
CHD4-204ENST00000535810 ADAMTS12P58397 1594 aa15.45■□□□□ 0.06
CHD4-204ENST00000535810 ERICH3Q5RHP9 1530 aa15.42■□□□□ 0.06
CHD4-204ENST00000535810 GRIN2AQ12879 1464 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms