RNA–Protein interactions for RNA: ENST00000535202.1

SFSWAP-202, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-202ENST00000535202 NISCHQ9Y2I1 1504 aa21.13■□□□□ 0.97
SFSWAP-202ENST00000535202 CCDC180Q9P1Z9 1646 aa18.92■□□□□ 0.62
SFSWAP-202ENST00000535202 ABCC9O60706 1549 aa18.76■□□□□ 0.59
SFSWAP-202ENST00000535202 RB1CC1Q8TDY2 1594 aa17.92■□□□□ 0.46
SFSWAP-202ENST00000535202 NACADO15069 1562 aa17.83■□□□□ 0.44
SFSWAP-202ENST00000535202 DCAF8L2P0C7V8 631 aa17.79■□□□□ 0.44
SFSWAP-202ENST00000535202 MYO15BQ96JP2 1530 aa17.6■□□□□ 0.41
SFSWAP-202ENST00000535202 ZCCHC6Q5VYS8 1495 aaKnown RBP17.56■□□□□ 0.4
SFSWAP-202ENST00000535202 UNC13AQ9UPW8 1703 aa17.55■□□□□ 0.4
SFSWAP-202ENST00000535202 PABPN1Q86U42 306 aaKnown RBP eCLIP17.48■□□□□ 0.39
SFSWAP-202ENST00000535202 DCAF1Q9Y4B6 1507 aa17.44■□□□□ 0.38
SFSWAP-202ENST00000535202 DNAJC5BQ9UF47 199 aa17.41■□□□□ 0.38
SFSWAP-202ENST00000535202 BICRAQ9NZM4 1560 aa17.38■□□□□ 0.37
SFSWAP-202ENST00000535202 SCRIBQ14160 1630 aa17.27■□□□□ 0.36
SFSWAP-202ENST00000535202 SHROOM4Q9ULL8 1493 aa17.15■□□□□ 0.34
SFSWAP-202ENST00000535202 CC2D2AQ9P2K1 1620 aa16.96■□□□□ 0.31
SFSWAP-202ENST00000535202 EIF4G1Q04637 1599 aaKnown RBP16.95■□□□□ 0.3
SFSWAP-202ENST00000535202 CECR2Q9BXF3 1484 aa16.87■□□□□ 0.29
SFSWAP-202ENST00000535202 SMARCA4P51532 1647 aa16.47■□□□□ 0.23
SFSWAP-202ENST00000535202 NCAPD3P42695 1498 aa16.43■□□□□ 0.22
SFSWAP-202ENST00000535202 ATAD2BQ9ULI0 1458 aa16.42■□□□□ 0.22
SFSWAP-202ENST00000535202 SMARCA2P51531 1590 aa16.4■□□□□ 0.22
SFSWAP-202ENST00000535202 BAZ1AQ9NRL2 1556 aaPredicted RBP16.4■□□□□ 0.22
SFSWAP-202ENST00000535202 HMGXB3Q12766 1538 aa16.35■□□□□ 0.21
SFSWAP-202ENST00000535202 MROH2BQ7Z745 1585 aa16.3■□□□□ 0.2
SFSWAP-202ENST00000535202 BAZ1BQ9UIG0 1483 aaKnown RBP16.29■□□□□ 0.2
SFSWAP-202ENST00000535202 PEG3Q9GZU2 1588 aa16.28■□□□□ 0.2
SFSWAP-202ENST00000535202 ERCC6Q03468 1493 aa16.2■□□□□ 0.18
SFSWAP-202ENST00000535202 NESP48681 1621 aa16.16■□□□□ 0.18
SFSWAP-202ENST00000535202 WIZO95785 1651 aa16.13■□□□□ 0.17
SFSWAP-202ENST00000535202 CUX2O14529 1486 aa16.09■□□□□ 0.17
SFSWAP-202ENST00000535202 LAMC3Q9Y6N6 1575 aa16.07■□□□□ 0.16
SFSWAP-202ENST00000535202 RSF1Q96T23 1441 aaPredicted RBP16■□□□□ 0.15
SFSWAP-202ENST00000535202 KIF21AQ7Z4S6 1674 aa15.99■□□□□ 0.15
SFSWAP-202ENST00000535202 THOC2Q8NI27 1593 aaKnown RBP15.97■□□□□ 0.15
SFSWAP-202ENST00000535202 PDS5BQ9NTI5 1447 aa15.95■□□□□ 0.14
SFSWAP-202ENST00000535202 CADPSQ9ULU8 1353 aa15.95■□□□□ 0.14
SFSWAP-202ENST00000535202 TOP2AP11388 1531 aaKnown RBP15.93■□□□□ 0.14
SFSWAP-202ENST00000535202 DNAJC5Q9H3Z4 198 aa15.86■□□□□ 0.13
SFSWAP-202ENST00000535202 MRC2Q9UBG0 1479 aa15.83■□□□□ 0.12
SFSWAP-202ENST00000535202 CFTRP13569 1480 aa15.8■□□□□ 0.12
SFSWAP-202ENST00000535202 CEP164Q9UPV0 1460 aa15.8■□□□□ 0.12
SFSWAP-202ENST00000535202 FANCD2Q9BXW9 1451 aa15.79■□□□□ 0.12
SFSWAP-202ENST00000535202 WDR62O43379 1518 aa15.78■□□□□ 0.12
SFSWAP-202ENST00000535202 CCDC88BA6NC98 1476 aa15.72■□□□□ 0.11
SFSWAP-202ENST00000535202 PRDM2Q13029 1718 aa15.72■□□□□ 0.11
SFSWAP-202ENST00000535202 URB2Q14146 1524 aaKnown RBP15.65■□□□□ 0.1
SFSWAP-202ENST00000535202 TOPBP1Q92547 1522 aa15.51■□□□□ 0.07
SFSWAP-202ENST00000535202 DNMBPQ6XZF7 1577 aa15.48■□□□□ 0.07
SFSWAP-202ENST00000535202 ABCC8Q09428 1581 aa15.47■□□□□ 0.07
SFSWAP-202ENST00000535202 IFT140Q96RY7 1462 aa15.46■□□□□ 0.07
SFSWAP-202ENST00000535202 SUPT5HO00267 1087 aaKnown RBP15.44■□□□□ 0.06
SFSWAP-202ENST00000535202 ZNF608Q9ULD9 1512 aaPredicted RBP15.43■□□□□ 0.06
SFSWAP-202ENST00000535202 EIF4G3O43432 1585 aaKnown RBP15.37■□□□□ 0.05
SFSWAP-202ENST00000535202 POLA1P09884 1462 aaPredicted RBP15.36■□□□□ 0.05
SFSWAP-202ENST00000535202 OSCARQ8IYS5 282 aa15.36■□□□□ 0.05
SFSWAP-202ENST00000535202 TARBP1Q13395 1621 aaKnown RBP15.35■□□□□ 0.05
SFSWAP-202ENST00000535202 AQRO60306 1485 aaKnown RBP eCLIP15.31■□□□□ 0.045e-7■■■■■ 30.5
SFSWAP-202ENST00000535202 RAD54L2Q9Y4B4 1467 aa15.31■□□□□ 0.04
SFSWAP-202ENST00000535202 CUX1P39880 1505 aa15.31■□□□□ 0.04
SFSWAP-202ENST00000535202 FGD5Q6ZNL6 1462 aa15.29■□□□□ 0.04
SFSWAP-202ENST00000535202 TRIM41Q8WV44 630 aa15.29■□□□□ 0.04
SFSWAP-202ENST00000535202 SOGA1O94964 1423 aa15.28■□□□□ 0.04
SFSWAP-202ENST00000535202 CHD1O14646 1710 aa15.25■□□□□ 0.03
SFSWAP-202ENST00000535202 TDRD9Q8NDG6 1382 aaKnown RBP15.23■□□□□ 0.03
SFSWAP-202ENST00000535202 WDR97A6NE52 1622 aa15.21■□□□□ 0.03
SFSWAP-202ENST00000535202 RIMBP3CA6NJZ7 1639 aa15.19■□□□□ 0.02
SFSWAP-202ENST00000535202 RIMBP3BA6NNM3 1639 aa15.19■□□□□ 0.02
SFSWAP-202ENST00000535202 RIMBP3Q9UFD9 1639 aa15.19■□□□□ 0.02
SFSWAP-202ENST00000535202 FBLN2P98095 1184 aa15.19■□□□□ 0.02
SFSWAP-202ENST00000535202 SNAPC4Q5SXM2 1469 aa15.18■□□□□ 0.02
SFSWAP-202ENST00000535202 ARHGEF11O15085 1522 aa15.14■□□□□ 0.01
SFSWAP-202ENST00000535202 PBRM1Q86U86 1689 aa15.14■□□□□ 0.01
SFSWAP-202ENST00000535202 GRIN2BQ13224 1484 aa15.14■□□□□ 0.01
SFSWAP-202ENST00000535202 MAGI1Q96QZ7 1491 aaPredicted RBP15.13■□□□□ 0.01
SFSWAP-202ENST00000535202 ABCA10Q8WWZ4 1543 aa15.12■□□□□ 0.01
SFSWAP-202ENST00000535202 BIVM-ERCC5R4GMW8 1640 aa15.11■□□□□ 0.01
SFSWAP-202ENST00000535202 GAPVD1Q14C86 1478 aa15.11■□□□□ 0.01
SFSWAP-202ENST00000535202 TOP2BQ02880 1626 aa15.1■□□□□ 0.01
SFSWAP-202ENST00000535202 WRNQ14191 1432 aaPredicted RBP eCLIP15.1■□□□□ 0.01
SFSWAP-202ENST00000535202 SYNJ1O43426 1573 aa15.1■□□□□ 0.01
SFSWAP-202ENST00000535202 ABCA5Q8WWZ7 1642 aa15.1■□□□□ 0.01
SFSWAP-202ENST00000535202 CHMP7Q8WUX9 453 aaPredicted RBP15.09■□□□□ 0.01
SFSWAP-202ENST00000535202 SYNJ2O15056 1496 aa15.07■□□□□ 0
SFSWAP-202ENST00000535202 CLASP1Q7Z460 1538 aa15.04■□□□□ -0
SFSWAP-202ENST00000535202 CYB5RLQ6IPT4 315 aa15.01□□□□□ -0.01
SFSWAP-202ENST00000535202 ARAP1Q96P48 1450 aa15.01□□□□□ -0.01
SFSWAP-202ENST00000535202 ADAMTS12P58397 1594 aa14.98□□□□□ -0.01
SFSWAP-202ENST00000535202 GRIN2AQ12879 1464 aa14.95□□□□□ -0.02
SFSWAP-202ENST00000535202 ERICH3Q5RHP9 1530 aa14.93□□□□□ -0.02
SFSWAP-202ENST00000535202 FHAD1B1AJZ9 1412 aa14.92□□□□□ -0.02
SFSWAP-202ENST00000535202 CEP170Q5SW79 1584 aa14.9□□□□□ -0.02
SFSWAP-202ENST00000535202 NUP160Q12769 1436 aa14.88□□□□□ -0.03
SFSWAP-202ENST00000535202 ERCC6L2Q5T890 1561 aa14.83□□□□□ -0.04
SFSWAP-202ENST00000535202 SHROOM2Q13796 1616 aa14.81□□□□□ -0.04
SFSWAP-202ENST00000535202 TRHP20396 242 aaPredicted RBP14.81□□□□□ -0.04
SFSWAP-202ENST00000535202 KIF27Q86VH2 1401 aa14.81□□□□□ -0.04
SFSWAP-202ENST00000535202 CUL7Q14999 1698 aa14.77□□□□□ -0.05
SFSWAP-202ENST00000535202 RUSC2Q8N2Y8 1516 aa14.76□□□□□ -0.05
SFSWAP-202ENST00000535202 IGF1RP08069 1367 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms