RNA–Protein interactions for RNA: ENST00000534636.5

CTSB-233, Transcript of cathepsin B, human

TSL 4

Gene CTSB, Length 633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSB-233	ENST00000534636	NISCH	Q9Y2I1	1504 aa		45.98	■■■■■ 4.95
CTSB-233	ENST00000534636	CCDC180	Q9P1Z9	1646 aa		41.29	■■■■■ 4.2
CTSB-233	ENST00000534636	ABCC9	O60706	1549 aa		41.05	■■■■■ 4.16
CTSB-233	ENST00000534636	RB1CC1	Q8TDY2	1594 aa		39.22	■■■■□ 3.87
CTSB-233	ENST00000534636	NACAD	O15069	1562 aa		38.97	■■■■□ 3.83
CTSB-233	ENST00000534636	DCAF8L2	P0C7V8	631 aa		38.75	■■■■□ 3.79
CTSB-233	ENST00000534636	MYO15B	Q96JP2	1530 aa		38.46	■■■■□ 3.75
CTSB-233	ENST00000534636	UNC13A	Q9UPW8	1703 aa		38.32	■■■■□ 3.73
CTSB-233	ENST00000534636	DNAJC5B	Q9UF47	199 aa		38.22	■■■■□ 3.71
CTSB-233	ENST00000534636	PABPN1	Q86U42	306 aa	Known RBP eCLIP	38.2	■■■■□ 3.71
CTSB-233	ENST00000534636	ZCCHC6	Q5VYS8	1495 aa	Known RBP	38.15	■■■■□ 3.7
CTSB-233	ENST00000534636	DCAF1	Q9Y4B6	1507 aa		38.02	■■■■□ 3.68
CTSB-233	ENST00000534636	BICRA	Q9NZM4	1560 aa		37.97	■■■■□ 3.67
CTSB-233	ENST00000534636	SCRIB	Q14160	1630 aa		37.61	■■■■□ 3.61
CTSB-233	ENST00000534636	SHROOM4	Q9ULL8	1493 aa		37.6	■■■■□ 3.61
CTSB-233	ENST00000534636	CC2D2A	Q9P2K1	1620 aa		37.13	■■■■□ 3.53
CTSB-233	ENST00000534636	EIF4G1	Q04637	1599 aa	Known RBP	37.08	■■■■□ 3.53
CTSB-233	ENST00000534636	CECR2	Q9BXF3	1484 aa		36.99	■■■■□ 3.51
CTSB-233	ENST00000534636	NCAPD3	P42695	1498 aa		35.91	■■■■□ 3.34
CTSB-233	ENST00000534636	SMARCA4	P51532	1647 aa		35.88	■■■■□ 3.33
CTSB-233	ENST00000534636	ATAD2B	Q9ULI0	1458 aa		35.83	■■■■□ 3.33
CTSB-233	ENST00000534636	SMARCA2	P51531	1590 aa		35.81	■■■■□ 3.32
CTSB-233	ENST00000534636	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	35.74	■■■■□ 3.31
CTSB-233	ENST00000534636	HMGXB3	Q12766	1538 aa		35.73	■■■■□ 3.31
CTSB-233	ENST00000534636	BAZ1B	Q9UIG0	1483 aa	Known RBP	35.55	■■■■□ 3.28
CTSB-233	ENST00000534636	ERCC6	Q03468	1493 aa		35.53	■■■■□ 3.28
CTSB-233	ENST00000534636	PEG3	Q9GZU2	1588 aa		35.51	■■■■□ 3.28
CTSB-233	ENST00000534636	MROH2B	Q7Z745	1585 aa		35.4	■■■■□ 3.26
CTSB-233	ENST00000534636	CUX2	O14529	1486 aa		35.39	■■■■□ 3.26
CTSB-233	ENST00000534636	NES	P48681	1621 aa		35.28	■■■■□ 3.24
CTSB-233	ENST00000534636	LAMC3	Q9Y6N6	1575 aa		35.15	■■■■□ 3.22
CTSB-233	ENST00000534636	DNAJC5	Q9H3Z4	198 aa		35.07	■■■■□ 3.2
CTSB-233	ENST00000534636	WIZ	O95785	1651 aa		35.02	■■■■□ 3.2
CTSB-233	ENST00000534636	THOC2	Q8NI27	1593 aa	Known RBP	34.96	■■■■□ 3.19
CTSB-233	ENST00000534636	PDS5B	Q9NTI5	1447 aa		34.93	■■■■□ 3.18
CTSB-233	ENST00000534636	KIF21A	Q7Z4S6	1674 aa		34.92	■■■■□ 3.18
CTSB-233	ENST00000534636	CADPS	Q9ULU8	1353 aa		34.83	■■■■□ 3.17
CTSB-233	ENST00000534636	RSF1	Q96T23	1441 aa	Predicted RBP	34.72	■■■■□ 3.15
CTSB-233	ENST00000534636	TOP2A	P11388	1531 aa	Known RBP	34.63	■■■■□ 3.13
CTSB-233	ENST00000534636	MRC2	Q9UBG0	1479 aa		34.62	■■■■□ 3.13
CTSB-233	ENST00000534636	CEP164	Q9UPV0	1460 aa		34.53	■■■■□ 3.12
CTSB-233	ENST00000534636	WDR62	O43379	1518 aa		34.53	■■■■□ 3.12
CTSB-233	ENST00000534636	CFTR	P13569	1480 aa		34.47	■■■■□ 3.11
CTSB-233	ENST00000534636	FANCD2	Q9BXW9	1451 aa		34.47	■■■■□ 3.11
CTSB-233	ENST00000534636	PRDM2	Q13029	1718 aa		34.28	■■■■□ 3.08
CTSB-233	ENST00000534636	CCDC88B	A6NC98	1476 aa		34.16	■■■■□ 3.06
CTSB-233	ENST00000534636	URB2	Q14146	1524 aa	Known RBP	34.14	■■■■□ 3.06
CTSB-233	ENST00000534636	TOPBP1	Q92547	1522 aa		33.83	■■■■□ 3.01
CTSB-233	ENST00000534636	IFT140	Q96RY7	1462 aa		33.82	■■■■□ 3
CTSB-233	ENST00000534636	ABCC8	Q09428	1581 aa		33.81	■■■■□ 3
CTSB-233	ENST00000534636	DNMBP	Q6XZF7	1577 aa		33.76	■■■□□ 2.99
CTSB-233	ENST00000534636	OSCAR	Q8IYS5	282 aa		33.73	■■■□□ 2.99
CTSB-233	ENST00000534636	ZNF608	Q9ULD9	1512 aa	Predicted RBP	33.68	■■■□□ 2.98
CTSB-233	ENST00000534636	TRIM41	Q8WV44	630 aa		33.67	■■■□□ 2.98
CTSB-233	ENST00000534636	EIF4G3	O43432	1585 aa	Known RBP	33.59	■■■□□ 2.97
CTSB-233	ENST00000534636	TARBP1	Q13395	1621 aa	Known RBP	33.51	■■■□□ 2.96
CTSB-233	ENST00000534636	POLA1	P09884	1462 aa	Predicted RBP	33.49	■■■□□ 2.95
CTSB-233	ENST00000534636	AQR	O60306	1485 aa	Known RBP eCLIP	33.39	■■■□□ 2.94	3e-7	■■■■■ 33.7
CTSB-233	ENST00000534636	CHD1	O14646	1710 aa		33.33	■■■□□ 2.93
CTSB-233	ENST00000534636	RAD54L2	Q9Y4B4	1467 aa		33.32	■■■□□ 2.92
CTSB-233	ENST00000534636	SOGA1	O94964	1423 aa		33.32	■■■□□ 2.92
CTSB-233	ENST00000534636	RIMBP3C	A6NJZ7	1639 aa		33.31	■■■□□ 2.92
CTSB-233	ENST00000534636	RIMBP3B	A6NNM3	1639 aa		33.31	■■■□□ 2.92
CTSB-233	ENST00000534636	RIMBP3	Q9UFD9	1639 aa		33.31	■■■□□ 2.92
CTSB-233	ENST00000534636	SUPT5H	O00267	1087 aa	Known RBP	33.31	■■■□□ 2.92
CTSB-233	ENST00000534636	FGD5	Q6ZNL6	1462 aa		33.31	■■■□□ 2.92
CTSB-233	ENST00000534636	WDR97	A6NE52	1622 aa		33.28	■■■□□ 2.92
CTSB-233	ENST00000534636	CUX1	P39880	1505 aa		33.28	■■■□□ 2.92
CTSB-233	ENST00000534636	ARHGEF11	O15085	1522 aa		33.23	■■■□□ 2.91
CTSB-233	ENST00000534636	TDRD9	Q8NDG6	1382 aa	Known RBP	33.21	■■■□□ 2.91
CTSB-233	ENST00000534636	FBLN2	P98095	1184 aa		33.2	■■■□□ 2.91
CTSB-233	ENST00000534636	SNAPC4	Q5SXM2	1469 aa		33.12	■■■□□ 2.89
CTSB-233	ENST00000534636	MAGI1	Q96QZ7	1491 aa	Predicted RBP	33.06	■■■□□ 2.88
CTSB-233	ENST00000534636	GRIN2B	Q13224	1484 aa		33.05	■■■□□ 2.88
CTSB-233	ENST00000534636	PBRM1	Q86U86	1689 aa		33	■■■□□ 2.87
CTSB-233	ENST00000534636	CHMP7	Q8WUX9	453 aa	Predicted RBP	32.98	■■■□□ 2.87
CTSB-233	ENST00000534636	SYNJ1	O43426	1573 aa		32.96	■■■□□ 2.87
CTSB-233	ENST00000534636	GAPVD1	Q14C86	1478 aa		32.96	■■■□□ 2.87
CTSB-233	ENST00000534636	ABCA10	Q8WWZ4	1543 aa		32.94	■■■□□ 2.86
CTSB-233	ENST00000534636	SYNJ2	O15056	1496 aa		32.93	■■■□□ 2.86
CTSB-233	ENST00000534636	CYB5RL	Q6IPT4	315 aa		32.92	■■■□□ 2.86
CTSB-233	ENST00000534636	ABCA5	Q8WWZ7	1642 aa		32.9	■■■□□ 2.86
CTSB-233	ENST00000534636	CLASP1	Q7Z460	1538 aa		32.89	■■■□□ 2.86
CTSB-233	ENST00000534636	ARAP1	Q96P48	1450 aa		32.87	■■■□□ 2.85
CTSB-233	ENST00000534636	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.85	■■■□□ 2.85
CTSB-233	ENST00000534636	BIVM-ERCC5	R4GMW8	1640 aa		32.84	■■■□□ 2.85
CTSB-233	ENST00000534636	TOP2B	Q02880	1626 aa		32.83	■■■□□ 2.85
CTSB-233	ENST00000534636	ADAMTS12	P58397	1594 aa		32.66	■■■□□ 2.82
CTSB-233	ENST00000534636	GRIN2A	Q12879	1464 aa		32.63	■■■□□ 2.81
CTSB-233	ENST00000534636	TRH	P20396	242 aa	Predicted RBP	32.56	■■■□□ 2.8
CTSB-233	ENST00000534636	ERICH3	Q5RHP9	1530 aa		32.56	■■■□□ 2.8
CTSB-233	ENST00000534636	FHAD1	B1AJZ9	1412 aa		32.54	■■■□□ 2.8
CTSB-233	ENST00000534636	NUP160	Q12769	1436 aa		32.49	■■■□□ 2.79
CTSB-233	ENST00000534636	CEP170	Q5SW79	1584 aa		32.49	■■■□□ 2.79
CTSB-233	ENST00000534636	SHROOM2	Q13796	1616 aa		32.35	■■■□□ 2.77
CTSB-233	ENST00000534636	ERCC6L2	Q5T890	1561 aa		32.34	■■■□□ 2.77
CTSB-233	ENST00000534636	KIF27	Q86VH2	1401 aa		32.2	■■■□□ 2.75
CTSB-233	ENST00000534636	RUSC2	Q8N2Y8	1516 aa		32.19	■■■□□ 2.74
CTSB-233	ENST00000534636	CUL7	Q14999	1698 aa		32.17	■■■□□ 2.74
CTSB-233	ENST00000534636	PRG4	Q92954	1404 aa	Predicted RBP	32.17	■■■□□ 2.74

Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms