RNA–Protein interactions for RNA: ENST00000533671.1

NXF1-217, Transcript of nuclear RNA export factor 1, humanhuman

TSL 4

Gene NXF1, Length 589 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-217ENST00000533671 NISCHQ9Y2I1 1504 aa42.24■■■■■ 4.35
NXF1-217ENST00000533671 CCDC180Q9P1Z9 1646 aa37.6■■■■□ 3.61
NXF1-217ENST00000533671 ABCC9O60706 1549 aa36.8■■■■□ 3.48
NXF1-217ENST00000533671 DCAF8L2P0C7V8 631 aa35.48■■■■□ 3.27
NXF1-217ENST00000533671 RB1CC1Q8TDY2 1594 aa35.41■■■■□ 3.26
NXF1-217ENST00000533671 NACADO15069 1562 aa35.34■■■■□ 3.25
NXF1-217ENST00000533671 ZCCHC6Q5VYS8 1495 aaKnown RBP35.16■■■■□ 3.22
NXF1-217ENST00000533671 MYO15BQ96JP2 1530 aa35.05■■■■□ 3.2
NXF1-217ENST00000533671 DCAF1Q9Y4B6 1507 aa34.91■■■■□ 3.18
NXF1-217ENST00000533671 UNC13AQ9UPW8 1703 aa34.63■■■■□ 3.13
NXF1-217ENST00000533671 PABPN1Q86U42 306 aaKnown RBP eCLIP34.4■■■■□ 3.1
NXF1-217ENST00000533671 SCRIBQ14160 1630 aa34.34■■■■□ 3.09
NXF1-217ENST00000533671 BICRAQ9NZM4 1560 aa34.25■■■■□ 3.07
NXF1-217ENST00000533671 SHROOM4Q9ULL8 1493 aa33.89■■■■□ 3.02
NXF1-217ENST00000533671 DNAJC5BQ9UF47 199 aa33.69■■■□□ 2.98
NXF1-217ENST00000533671 EIF4G1Q04637 1599 aaKnown RBP33.39■■■□□ 2.94
NXF1-217ENST00000533671 CC2D2AQ9P2K1 1620 aa33.28■■■□□ 2.92
NXF1-217ENST00000533671 CECR2Q9BXF3 1484 aa33.05■■■□□ 2.88
NXF1-217ENST00000533671 SMARCA4P51532 1647 aa32.81■■■□□ 2.84
NXF1-217ENST00000533671 BAZ1AQ9NRL2 1556 aaPredicted RBP32.78■■■□□ 2.84
NXF1-217ENST00000533671 SMARCA2P51531 1590 aa32.6■■■□□ 2.81
NXF1-217ENST00000533671 ATAD2BQ9ULI0 1458 aa32.6■■■□□ 2.81
NXF1-217ENST00000533671 MROH2BQ7Z745 1585 aa32.56■■■□□ 2.8
NXF1-217ENST00000533671 NCAPD3P42695 1498 aa32.55■■■□□ 2.8
NXF1-217ENST00000533671 HMGXB3Q12766 1538 aa32.42■■■□□ 2.78
NXF1-217ENST00000533671 PEG3Q9GZU2 1588 aa32.42■■■□□ 2.78
NXF1-217ENST00000533671 BAZ1BQ9UIG0 1483 aaKnown RBP32.38■■■□□ 2.77
NXF1-217ENST00000533671 WIZO95785 1651 aa32.27■■■□□ 2.76
NXF1-217ENST00000533671 RSF1Q96T23 1441 aaPredicted RBP32.17■■■□□ 2.74
NXF1-217ENST00000533671 TOP2AP11388 1531 aaKnown RBP31.89■■■□□ 2.7
NXF1-217ENST00000533671 NESP48681 1621 aa31.82■■■□□ 2.69
NXF1-217ENST00000533671 ERCC6Q03468 1493 aa31.78■■■□□ 2.68
NXF1-217ENST00000533671 LAMC3Q9Y6N6 1575 aa31.77■■■□□ 2.68
NXF1-217ENST00000533671 CADPSQ9ULU8 1353 aa31.65■■■□□ 2.66
NXF1-217ENST00000533671 PDS5BQ9NTI5 1447 aa31.57■■■□□ 2.64
NXF1-217ENST00000533671 SUPT5HO00267 1087 aaKnown RBP31.51■■■□□ 2.63
NXF1-217ENST00000533671 CCDC88BA6NC98 1476 aa31.51■■■□□ 2.63
NXF1-217ENST00000533671 KIF21AQ7Z4S6 1674 aa31.5■■■□□ 2.63
NXF1-217ENST00000533671 CFTRP13569 1480 aa31.43■■■□□ 2.62
NXF1-217ENST00000533671 CUX2O14529 1486 aa31.36■■■□□ 2.61
NXF1-217ENST00000533671 THOC2Q8NI27 1593 aaKnown RBP31.33■■■□□ 2.61
NXF1-217ENST00000533671 PRDM2Q13029 1718 aa31.32■■■□□ 2.6
NXF1-217ENST00000533671 FANCD2Q9BXW9 1451 aa31.31■■■□□ 2.6
NXF1-217ENST00000533671 CEP164Q9UPV0 1460 aa31.29■■■□□ 2.6
NXF1-217ENST00000533671 MRC2Q9UBG0 1479 aa31.21■■■□□ 2.59
NXF1-217ENST00000533671 WDR62O43379 1518 aa31.08■■■□□ 2.57
NXF1-217ENST00000533671 URB2Q14146 1524 aaKnown RBP30.96■■■□□ 2.55
NXF1-217ENST00000533671 ABCC8Q09428 1581 aa30.82■■■□□ 2.52
NXF1-217ENST00000533671 TOPBP1Q92547 1522 aa30.79■■■□□ 2.52
NXF1-217ENST00000533671 DNMBPQ6XZF7 1577 aa30.77■■■□□ 2.52
NXF1-217ENST00000533671 IFT140Q96RY7 1462 aa30.61■■■□□ 2.49
NXF1-217ENST00000533671 CUX1P39880 1505 aa30.55■■■□□ 2.48
NXF1-217ENST00000533671 POLA1P09884 1462 aaPredicted RBP30.52■■■□□ 2.48
NXF1-217ENST00000533671 FGD5Q6ZNL6 1462 aa30.47■■■□□ 2.47
NXF1-217ENST00000533671 ZNF608Q9ULD9 1512 aaPredicted RBP30.45■■■□□ 2.47
NXF1-217ENST00000533671 TARBP1Q13395 1621 aaKnown RBP30.44■■■□□ 2.46
NXF1-217ENST00000533671 SOGA1O94964 1423 aa30.44■■■□□ 2.46
NXF1-217ENST00000533671 RAD54L2Q9Y4B4 1467 aa30.41■■■□□ 2.46
NXF1-217ENST00000533671 DNAJC5Q9H3Z4 198 aa30.39■■■□□ 2.46
NXF1-217ENST00000533671 WRNQ14191 1432 aaPredicted RBP eCLIP30.39■■■□□ 2.45
NXF1-217ENST00000533671 EIF4G3O43432 1585 aaKnown RBP30.37■■■□□ 2.45
NXF1-217ENST00000533671 TOP2BQ02880 1626 aa30.31■■■□□ 2.44
NXF1-217ENST00000533671 BIVM-ERCC5R4GMW8 1640 aa30.31■■■□□ 2.44
NXF1-217ENST00000533671 AQRO60306 1485 aaKnown RBP eCLIP30.3■■■□□ 2.44
NXF1-217ENST00000533671 SYNJ1O43426 1573 aa30.29■■■□□ 2.44
NXF1-217ENST00000533671 TDRD9Q8NDG6 1382 aaKnown RBP30.25■■■□□ 2.43
NXF1-217ENST00000533671 WDR97A6NE52 1622 aa30.22■■■□□ 2.43
NXF1-217ENST00000533671 ABCA10Q8WWZ4 1543 aa30.15■■■□□ 2.42
NXF1-217ENST00000533671 OSCARQ8IYS5 282 aa30.12■■■□□ 2.41
NXF1-217ENST00000533671 GAPVD1Q14C86 1478 aa30.08■■■□□ 2.41
NXF1-217ENST00000533671 GRIN2BQ13224 1484 aa30.07■■■□□ 2.4
NXF1-217ENST00000533671 PBRM1Q86U86 1689 aa30.07■■■□□ 2.4
NXF1-217ENST00000533671 FBLN2P98095 1184 aa30.05■■■□□ 2.4
NXF1-217ENST00000533671 CHD1O14646 1710 aa30.04■■■□□ 2.4
NXF1-217ENST00000533671 ABCA5Q8WWZ7 1642 aa30.04■■■□□ 2.4
NXF1-217ENST00000533671 SNAPC4Q5SXM2 1469 aa30.03■■■□□ 2.4
NXF1-217ENST00000533671 MAGI1Q96QZ7 1491 aaPredicted RBP29.98■■■□□ 2.39
NXF1-217ENST00000533671 CHMP7Q8WUX9 453 aaPredicted RBP29.93■■■□□ 2.38
NXF1-217ENST00000533671 SYNJ2O15056 1496 aa29.86■■■□□ 2.37
NXF1-217ENST00000533671 ERICH3Q5RHP9 1530 aa29.81■■■□□ 2.36
NXF1-217ENST00000533671 KIF27Q86VH2 1401 aa29.77■■■□□ 2.36
NXF1-217ENST00000533671 ADAMTS12P58397 1594 aa29.77■■■□□ 2.36
NXF1-217ENST00000533671 TRIM41Q8WV44 630 aa29.74■■■□□ 2.35
NXF1-217ENST00000533671 FHAD1B1AJZ9 1412 aa29.72■■■□□ 2.35
NXF1-217ENST00000533671 GRIN2AQ12879 1464 aa29.67■■■□□ 2.34
NXF1-217ENST00000533671 RIMBP3CA6NJZ7 1639 aa29.62■■■□□ 2.33
NXF1-217ENST00000533671 RIMBP3BA6NNM3 1639 aa29.62■■■□□ 2.33
NXF1-217ENST00000533671 RIMBP3Q9UFD9 1639 aa29.62■■■□□ 2.33
NXF1-217ENST00000533671 CLASP1Q7Z460 1538 aa29.61■■■□□ 2.33
NXF1-217ENST00000533671 IGF1RP08069 1367 aa29.59■■■□□ 2.33
NXF1-217ENST00000533671 ARHGEF11O15085 1522 aa29.59■■■□□ 2.33
NXF1-217ENST00000533671 CUL7Q14999 1698 aa29.59■■■□□ 2.33
NXF1-217ENST00000533671 CEP170Q5SW79 1584 aa29.52■■■□□ 2.32
NXF1-217ENST00000533671 NUP160Q12769 1436 aa29.5■■■□□ 2.31
NXF1-217ENST00000533671 CARMIL1Q5VZK9 1371 aa29.47■■■□□ 2.31
NXF1-217ENST00000533671 RUSC2Q8N2Y8 1516 aa29.45■■■□□ 2.31
NXF1-217ENST00000533671 CYB5RLQ6IPT4 315 aa29.37■■■□□ 2.29
NXF1-217ENST00000533671 ARAP1Q96P48 1450 aa29.33■■■□□ 2.29
NXF1-217ENST00000533671 CHIC1Q5VXU3 224 aa29.31■■■□□ 2.28
NXF1-217ENST00000533671 RAPGEF2Q9Y4G8 1499 aa29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms