RNA–Protein interactions for RNA: ENST00000533572.5

CTSB-229, Transcript of cathepsin B, humanhuman

TSL 3

Gene CTSB, Length 975 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSB-229ENST00000533572 NISCHQ9Y2I1 1504 aa41.51■■■■■ 4.24
CTSB-229ENST00000533572 CCDC180Q9P1Z9 1646 aa36.99■■■■□ 3.51
CTSB-229ENST00000533572 ABCC9O60706 1549 aa36.39■■■■□ 3.42
CTSB-229ENST00000533572 RB1CC1Q8TDY2 1594 aa34.94■■■■□ 3.18
CTSB-229ENST00000533572 DCAF8L2P0C7V8 631 aa34.86■■■■□ 3.17
CTSB-229ENST00000533572 NACADO15069 1562 aa34.83■■■■□ 3.17
CTSB-229ENST00000533572 ZCCHC6Q5VYS8 1495 aaKnown RBP34.54■■■■□ 3.12
CTSB-229ENST00000533572 MYO15BQ96JP2 1530 aa34.54■■■■□ 3.12
CTSB-229ENST00000533572 DCAF1Q9Y4B6 1507 aa34.33■■■■□ 3.09
CTSB-229ENST00000533572 UNC13AQ9UPW8 1703 aa34.05■■■■□ 3.04
CTSB-229ENST00000533572 PABPN1Q86U42 306 aaKnown RBP eCLIP33.97■■■■□ 3.03
CTSB-229ENST00000533572 DNAJC5BQ9UF47 199 aa33.89■■■■□ 3.02
CTSB-229ENST00000533572 BICRAQ9NZM4 1560 aa33.79■■■■□ 3
CTSB-229ENST00000533572 SCRIBQ14160 1630 aa33.77■■■■□ 3
CTSB-229ENST00000533572 SHROOM4Q9ULL8 1493 aa33.51■■■□□ 2.96
CTSB-229ENST00000533572 EIF4G1Q04637 1599 aaKnown RBP32.97■■■□□ 2.87
CTSB-229ENST00000533572 CC2D2AQ9P2K1 1620 aa32.88■■■□□ 2.85
CTSB-229ENST00000533572 CECR2Q9BXF3 1484 aa32.72■■■□□ 2.83
CTSB-229ENST00000533572 SMARCA4P51532 1647 aa32.26■■■□□ 2.75
CTSB-229ENST00000533572 BAZ1AQ9NRL2 1556 aaPredicted RBP32.23■■■□□ 2.75
CTSB-229ENST00000533572 SMARCA2P51531 1590 aa32.12■■■□□ 2.73
CTSB-229ENST00000533572 ATAD2BQ9ULI0 1458 aa32.12■■■□□ 2.73
CTSB-229ENST00000533572 NCAPD3P42695 1498 aa32.11■■■□□ 2.73
CTSB-229ENST00000533572 MROH2BQ7Z745 1585 aa31.98■■■□□ 2.71
CTSB-229ENST00000533572 HMGXB3Q12766 1538 aa31.97■■■□□ 2.71
CTSB-229ENST00000533572 PEG3Q9GZU2 1588 aa31.91■■■□□ 2.7
CTSB-229ENST00000533572 BAZ1BQ9UIG0 1483 aaKnown RBP31.9■■■□□ 2.7
CTSB-229ENST00000533572 WIZO95785 1651 aa31.63■■■□□ 2.65
CTSB-229ENST00000533572 RSF1Q96T23 1441 aaPredicted RBP31.55■■■□□ 2.64
CTSB-229ENST00000533572 ERCC6Q03468 1493 aa31.45■■■□□ 2.62
CTSB-229ENST00000533572 DNAJC5Q9H3Z4 198 aa31.43■■■□□ 2.62
CTSB-229ENST00000533572 NESP48681 1621 aa31.4■■■□□ 2.62
CTSB-229ENST00000533572 LAMC3Q9Y6N6 1575 aa31.33■■■□□ 2.61
CTSB-229ENST00000533572 TOP2AP11388 1531 aaKnown RBP31.32■■■□□ 2.6
CTSB-229ENST00000533572 CADPSQ9ULU8 1353 aa31.2■■■□□ 2.59
CTSB-229ENST00000533572 PDS5BQ9NTI5 1447 aa31.16■■■□□ 2.58
CTSB-229ENST00000533572 CUX2O14529 1486 aa31.12■■■□□ 2.57
CTSB-229ENST00000533572 KIF21AQ7Z4S6 1674 aa31.03■■■□□ 2.56
CTSB-229ENST00000533572 THOC2Q8NI27 1593 aaKnown RBP30.96■■■□□ 2.55
CTSB-229ENST00000533572 CFTRP13569 1480 aa30.96■■■□□ 2.55
CTSB-229ENST00000533572 CCDC88BA6NC98 1476 aa30.92■■■□□ 2.54
CTSB-229ENST00000533572 CEP164Q9UPV0 1460 aa30.87■■■□□ 2.53
CTSB-229ENST00000533572 FANCD2Q9BXW9 1451 aa30.86■■■□□ 2.53
CTSB-229ENST00000533572 MRC2Q9UBG0 1479 aa30.83■■■□□ 2.53
CTSB-229ENST00000533572 SUPT5HO00267 1087 aaKnown RBP30.72■■■□□ 2.51
CTSB-229ENST00000533572 PRDM2Q13029 1718 aa30.72■■■□□ 2.51
CTSB-229ENST00000533572 WDR62O43379 1518 aa30.71■■■□□ 2.51
CTSB-229ENST00000533572 URB2Q14146 1524 aaKnown RBP30.52■■■□□ 2.48
CTSB-229ENST00000533572 ABCC8Q09428 1581 aa30.36■■■□□ 2.45
CTSB-229ENST00000533572 TOPBP1Q92547 1522 aa30.33■■■□□ 2.45
CTSB-229ENST00000533572 DNMBPQ6XZF7 1577 aa30.29■■■□□ 2.44
CTSB-229ENST00000533572 IFT140Q96RY7 1462 aa30.21■■■□□ 2.43
CTSB-229ENST00000533572 POLA1P09884 1462 aaPredicted RBP30.06■■■□□ 2.4
CTSB-229ENST00000533572 ZNF608Q9ULD9 1512 aaPredicted RBP30.04■■■□□ 2.4
CTSB-229ENST00000533572 CUX1P39880 1505 aa30.01■■■□□ 2.4
CTSB-229ENST00000533572 FGD5Q6ZNL6 1462 aa29.98■■■□□ 2.39
CTSB-229ENST00000533572 TARBP1Q13395 1621 aaKnown RBP29.97■■■□□ 2.39
CTSB-229ENST00000533572 SOGA1O94964 1423 aa29.96■■■□□ 2.39
CTSB-229ENST00000533572 EIF4G3O43432 1585 aaKnown RBP29.94■■■□□ 2.38
CTSB-229ENST00000533572 RAD54L2Q9Y4B4 1467 aa29.93■■■□□ 2.38
CTSB-229ENST00000533572 TRIM41Q8WV44 630 aa29.88■■■□□ 2.37
CTSB-229ENST00000533572 AQRO60306 1485 aaKnown RBP eCLIP29.87■■■□□ 2.374e-7■■■■■ 28.9
CTSB-229ENST00000533572 OSCARQ8IYS5 282 aa29.82■■■□□ 2.36
CTSB-229ENST00000533572 WRNQ14191 1432 aaPredicted RBP eCLIP29.81■■■□□ 2.36
CTSB-229ENST00000533572 TDRD9Q8NDG6 1382 aaKnown RBP29.79■■■□□ 2.36
CTSB-229ENST00000533572 WDR97A6NE52 1622 aa29.78■■■□□ 2.36
CTSB-229ENST00000533572 TOP2BQ02880 1626 aa29.73■■■□□ 2.35
CTSB-229ENST00000533572 BIVM-ERCC5R4GMW8 1640 aa29.72■■■□□ 2.35
CTSB-229ENST00000533572 SYNJ1O43426 1573 aa29.7■■■□□ 2.35
CTSB-229ENST00000533572 ABCA10Q8WWZ4 1543 aa29.66■■■□□ 2.34
CTSB-229ENST00000533572 GRIN2BQ13224 1484 aa29.64■■■□□ 2.34
CTSB-229ENST00000533572 FBLN2P98095 1184 aa29.63■■■□□ 2.33
CTSB-229ENST00000533572 GAPVD1Q14C86 1478 aa29.61■■■□□ 2.33
CTSB-229ENST00000533572 SNAPC4Q5SXM2 1469 aa29.61■■■□□ 2.33
CTSB-229ENST00000533572 CHD1O14646 1710 aa29.59■■■□□ 2.33
CTSB-229ENST00000533572 MAGI1Q96QZ7 1491 aaPredicted RBP29.57■■■□□ 2.32
CTSB-229ENST00000533572 ABCA5Q8WWZ7 1642 aa29.55■■■□□ 2.32
CTSB-229ENST00000533572 PBRM1Q86U86 1689 aa29.54■■■□□ 2.32
CTSB-229ENST00000533572 CHMP7Q8WUX9 453 aaPredicted RBP29.51■■■□□ 2.31
CTSB-229ENST00000533572 SYNJ2O15056 1496 aa29.46■■■□□ 2.31
CTSB-229ENST00000533572 ERICH3Q5RHP9 1530 aa29.32■■■□□ 2.28
CTSB-229ENST00000533572 RIMBP3CA6NJZ7 1639 aa29.31■■■□□ 2.28
CTSB-229ENST00000533572 RIMBP3BA6NNM3 1639 aa29.31■■■□□ 2.28
CTSB-229ENST00000533572 RIMBP3Q9UFD9 1639 aa29.31■■■□□ 2.28
CTSB-229ENST00000533572 ADAMTS12P58397 1594 aa29.3■■■□□ 2.28
CTSB-229ENST00000533572 ARHGEF11O15085 1522 aa29.3■■■□□ 2.28
CTSB-229ENST00000533572 FHAD1B1AJZ9 1412 aa29.27■■■□□ 2.28
CTSB-229ENST00000533572 CLASP1Q7Z460 1538 aa29.25■■■□□ 2.27
CTSB-229ENST00000533572 GRIN2AQ12879 1464 aa29.24■■■□□ 2.27
CTSB-229ENST00000533572 KIF27Q86VH2 1401 aa29.22■■■□□ 2.27
CTSB-229ENST00000533572 NUP160Q12769 1436 aa29.1■■■□□ 2.25
CTSB-229ENST00000533572 CEP170Q5SW79 1584 aa29.07■■■□□ 2.24
CTSB-229ENST00000533572 CYB5RLQ6IPT4 315 aa29.07■■■□□ 2.24
CTSB-229ENST00000533572 IGF1RP08069 1367 aa29.05■■■□□ 2.24
CTSB-229ENST00000533572 ARAP1Q96P48 1450 aa29.04■■■□□ 2.24
CTSB-229ENST00000533572 CUL7Q14999 1698 aa29.04■■■□□ 2.24
CTSB-229ENST00000533572 CARMIL1Q5VZK9 1371 aa28.93■■■□□ 2.22
CTSB-229ENST00000533572 CHIC1Q5VXU3 224 aa28.92■■■□□ 2.22
CTSB-229ENST00000533572 RUSC2Q8N2Y8 1516 aa28.87■■■□□ 2.21
CTSB-229ENST00000533572 SHROOM2Q13796 1616 aa28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms