RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 NISCHQ9Y2I1 1504 aa39.7■■■■□ 3.95
CHMP4A-207ENST00000533523 ABCC9O60706 1549 aa36.54■■■■□ 3.44
CHMP4A-207ENST00000533523 CCDC180Q9P1Z9 1646 aa35.94■■■■□ 3.34
CHMP4A-207ENST00000533523 DNAJC5BQ9UF47 199 aa34.97■■■■□ 3.19
CHMP4A-207ENST00000533523 RB1CC1Q8TDY2 1594 aa34.4■■■■□ 3.1
CHMP4A-207ENST00000533523 NACADO15069 1562 aa34.01■■■■□ 3.03
CHMP4A-207ENST00000533523 UNC13AQ9UPW8 1703 aa33.99■■■■□ 3.03
CHMP4A-207ENST00000533523 PABPN1Q86U42 306 aaKnown RBP eCLIP33.84■■■■□ 3.01
CHMP4A-207ENST00000533523 BICRAQ9NZM4 1560 aa33.71■■■□□ 2.99
CHMP4A-207ENST00000533523 DCAF8L2P0C7V8 631 aa33.48■■■□□ 2.95
CHMP4A-207ENST00000533523 MYO15BQ96JP2 1530 aa33.34■■■□□ 2.93
CHMP4A-207ENST00000533523 CC2D2AQ9P2K1 1620 aa33.03■■■□□ 2.88
CHMP4A-207ENST00000533523 CECR2Q9BXF3 1484 aa32.92■■■□□ 2.86
CHMP4A-207ENST00000533523 ZCCHC6Q5VYS8 1495 aaKnown RBP32.86■■■□□ 2.85
CHMP4A-207ENST00000533523 SHROOM4Q9ULL8 1493 aa32.86■■■□□ 2.85
CHMP4A-207ENST00000533523 EIF4G1Q04637 1599 aaKnown RBP32.78■■■□□ 2.84
CHMP4A-207ENST00000533523 SCRIBQ14160 1630 aa32.74■■■□□ 2.83
CHMP4A-207ENST00000533523 DCAF1Q9Y4B6 1507 aa32.73■■■□□ 2.83
CHMP4A-207ENST00000533523 DNAJC5Q9H3Z4 198 aa32.34■■■□□ 2.77
CHMP4A-207ENST00000533523 CUX2O14529 1486 aa31.65■■■□□ 2.66
CHMP4A-207ENST00000533523 NCAPD3P42695 1498 aa31.42■■■□□ 2.62
CHMP4A-207ENST00000533523 ERCC6Q03468 1493 aa31.4■■■□□ 2.62
CHMP4A-207ENST00000533523 NESP48681 1621 aa31.31■■■□□ 2.6
CHMP4A-207ENST00000533523 ATAD2BQ9ULI0 1458 aa31.29■■■□□ 2.6
CHMP4A-207ENST00000533523 HMGXB3Q12766 1538 aa31.19■■■□□ 2.58
CHMP4A-207ENST00000533523 THOC2Q8NI27 1593 aaKnown RBP31.17■■■□□ 2.58
CHMP4A-207ENST00000533523 SMARCA4P51532 1647 aa31.16■■■□□ 2.58
CHMP4A-207ENST00000533523 SMARCA2P51531 1590 aa31.07■■■□□ 2.56
CHMP4A-207ENST00000533523 KIF21AQ7Z4S6 1674 aa30.93■■■□□ 2.54
CHMP4A-207ENST00000533523 BAZ1BQ9UIG0 1483 aaKnown RBP30.86■■■□□ 2.53
CHMP4A-207ENST00000533523 PEG3Q9GZU2 1588 aa30.86■■■□□ 2.53
CHMP4A-207ENST00000533523 BAZ1AQ9NRL2 1556 aaPredicted RBP30.83■■■□□ 2.53
CHMP4A-207ENST00000533523 LAMC3Q9Y6N6 1575 aa30.82■■■□□ 2.52
CHMP4A-207ENST00000533523 MROH2BQ7Z745 1585 aa30.67■■■□□ 2.5
CHMP4A-207ENST00000533523 TRIM41Q8WV44 630 aa30.59■■■□□ 2.49
CHMP4A-207ENST00000533523 PDS5BQ9NTI5 1447 aa30.51■■■□□ 2.47
CHMP4A-207ENST00000533523 WDR62O43379 1518 aa30.47■■■□□ 2.47
CHMP4A-207ENST00000533523 MRC2Q9UBG0 1479 aa30.44■■■□□ 2.46
CHMP4A-207ENST00000533523 CADPSQ9ULU8 1353 aa30.38■■■□□ 2.45
CHMP4A-207ENST00000533523 WIZO95785 1651 aa30.3■■■□□ 2.44
CHMP4A-207ENST00000533523 CEP164Q9UPV0 1460 aa30.15■■■□□ 2.42
CHMP4A-207ENST00000533523 FANCD2Q9BXW9 1451 aa30.09■■■□□ 2.41
CHMP4A-207ENST00000533523 URB2Q14146 1524 aaKnown RBP30.03■■■□□ 2.4
CHMP4A-207ENST00000533523 CFTRP13569 1480 aa29.98■■■□□ 2.39
CHMP4A-207ENST00000533523 RIMBP3CA6NJZ7 1639 aa29.96■■■□□ 2.39
CHMP4A-207ENST00000533523 RIMBP3BA6NNM3 1639 aa29.96■■■□□ 2.39
CHMP4A-207ENST00000533523 RIMBP3Q9UFD9 1639 aa29.96■■■□□ 2.39
CHMP4A-207ENST00000533523 OSCARQ8IYS5 282 aa29.91■■■□□ 2.38
CHMP4A-207ENST00000533523 TOP2AP11388 1531 aaKnown RBP29.85■■■□□ 2.37
CHMP4A-207ENST00000533523 RSF1Q96T23 1441 aaPredicted RBP29.82■■■□□ 2.36
CHMP4A-207ENST00000533523 PRDM2Q13029 1718 aa29.78■■■□□ 2.36
CHMP4A-207ENST00000533523 ZNF608Q9ULD9 1512 aaPredicted RBP29.77■■■□□ 2.36
CHMP4A-207ENST00000533523 ARHGEF11O15085 1522 aa29.72■■■□□ 2.35
CHMP4A-207ENST00000533523 EIF4G3O43432 1585 aaKnown RBP29.57■■■□□ 2.32
CHMP4A-207ENST00000533523 IFT140Q96RY7 1462 aa29.55■■■□□ 2.32
CHMP4A-207ENST00000533523 CHD1O14646 1710 aa29.52■■■□□ 2.32
CHMP4A-207ENST00000533523 TOPBP1Q92547 1522 aa29.51■■■□□ 2.32
CHMP4A-207ENST00000533523 CCDC88BA6NC98 1476 aa29.44■■■□□ 2.3
CHMP4A-207ENST00000533523 ARAP1Q96P48 1450 aa29.44■■■□□ 2.3
CHMP4A-207ENST00000533523 TARBP1Q13395 1621 aaKnown RBP29.42■■■□□ 2.3
CHMP4A-207ENST00000533523 CYB5RLQ6IPT4 315 aa29.34■■■□□ 2.29
CHMP4A-207ENST00000533523 DNMBPQ6XZF7 1577 aa29.34■■■□□ 2.29
CHMP4A-207ENST00000533523 AQRO60306 1485 aaKnown RBP eCLIP29.31■■■□□ 2.284e-8■■■■□ 23.3
CHMP4A-207ENST00000533523 POLA1P09884 1462 aaPredicted RBP29.18■■■□□ 2.26
CHMP4A-207ENST00000533523 ABCC8Q09428 1581 aa29.18■■■□□ 2.26
CHMP4A-207ENST00000533523 CLASP1Q7Z460 1538 aa29.14■■■□□ 2.25
CHMP4A-207ENST00000533523 RAD54L2Q9Y4B4 1467 aa29.11■■■□□ 2.25
CHMP4A-207ENST00000533523 TRHP20396 242 aaPredicted RBP29.1■■■□□ 2.25
CHMP4A-207ENST00000533523 SNAPC4Q5SXM2 1469 aa29.01■■■□□ 2.23
CHMP4A-207ENST00000533523 FBLN2P98095 1184 aa29■■■□□ 2.23
CHMP4A-207ENST00000533523 TDRD9Q8NDG6 1382 aaKnown RBP28.98■■■□□ 2.23
CHMP4A-207ENST00000533523 WDR97A6NE52 1622 aa28.9■■■□□ 2.22
CHMP4A-207ENST00000533523 FGD5Q6ZNL6 1462 aa28.89■■■□□ 2.22
CHMP4A-207ENST00000533523 SOGA1O94964 1423 aa28.88■■■□□ 2.21
CHMP4A-207ENST00000533523 SYNJ1O43426 1573 aa28.86■■■□□ 2.21
CHMP4A-207ENST00000533523 CUX1P39880 1505 aa28.85■■■□□ 2.21
CHMP4A-207ENST00000533523 MAGI1Q96QZ7 1491 aaPredicted RBP28.81■■■□□ 2.2
CHMP4A-207ENST00000533523 PBRM1Q86U86 1689 aa28.79■■■□□ 2.2
CHMP4A-207ENST00000533523 SYNJ2O15056 1496 aa28.74■■■□□ 2.19
CHMP4A-207ENST00000533523 ERCC6L2Q5T890 1561 aa28.74■■■□□ 2.19
CHMP4A-207ENST00000533523 GRIN2BQ13224 1484 aa28.73■■■□□ 2.19
CHMP4A-207ENST00000533523 GAPVD1Q14C86 1478 aa28.71■■■□□ 2.19
CHMP4A-207ENST00000533523 CHMP7Q8WUX9 453 aaPredicted RBP28.66■■■□□ 2.18
CHMP4A-207ENST00000533523 ABCA5Q8WWZ7 1642 aa28.65■■■□□ 2.18
CHMP4A-207ENST00000533523 AEBP2Q6ZN18 517 aaPredicted RBP28.61■■■□□ 2.17
CHMP4A-207ENST00000533523 KIF13AQ9H1H9 1805 aa28.5■■■□□ 2.15
CHMP4A-207ENST00000533523 CEP170Q5SW79 1584 aa28.5■■■□□ 2.15
CHMP4A-207ENST00000533523 ABCA10Q8WWZ4 1543 aa28.5■■■□□ 2.15
CHMP4A-207ENST00000533523 SHROOM2Q13796 1616 aa28.45■■■□□ 2.14
CHMP4A-207ENST00000533523 ADAMTS12P58397 1594 aa28.45■■■□□ 2.14
CHMP4A-207ENST00000533523 GRIN2AQ12879 1464 aa28.44■■■□□ 2.14
CHMP4A-207ENST00000533523 SUPT5HO00267 1087 aaKnown RBP28.4■■■□□ 2.14
CHMP4A-207ENST00000533523 NUP160Q12769 1436 aa28.4■■■□□ 2.14
CHMP4A-207ENST00000533523 BIVM-ERCC5R4GMW8 1640 aa28.32■■■□□ 2.12
CHMP4A-207ENST00000533523 WRNQ14191 1432 aaPredicted RBP eCLIP28.27■■■□□ 2.12
CHMP4A-207ENST00000533523 TOP2BQ02880 1626 aa28.27■■■□□ 2.12
CHMP4A-207ENST00000533523 FHAD1B1AJZ9 1412 aa28.14■■■□□ 2.1
CHMP4A-207ENST00000533523 ERICH3Q5RHP9 1530 aa28.1■■■□□ 2.09
CHMP4A-207ENST00000533523 RUSC2Q8N2Y8 1516 aa28.09■■■□□ 2.09
CHMP4A-207ENST00000533523 DIP2BQ9P265 1576 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms