RNA–Protein interactions for RNA: ENST00000533440.1

NXF1-215, Transcript of nuclear RNA export factor 1, humanhuman

TSL 2

Gene NXF1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-215ENST00000533440 NISCHQ9Y2I1 1504 aa20.12■□□□□ 0.81
NXF1-215ENST00000533440 ABCC9O60706 1549 aa18.49■□□□□ 0.55
NXF1-215ENST00000533440 CCDC180Q9P1Z9 1646 aa18.18■□□□□ 0.5
NXF1-215ENST00000533440 DNAJC5BQ9UF47 199 aa17.67■□□□□ 0.42
NXF1-215ENST00000533440 RB1CC1Q8TDY2 1594 aa17.46■□□□□ 0.39
NXF1-215ENST00000533440 NACADO15069 1562 aa17.28■□□□□ 0.36
NXF1-215ENST00000533440 PABPN1Q86U42 306 aaKnown RBP eCLIP17.16■□□□□ 0.34
NXF1-215ENST00000533440 UNC13AQ9UPW8 1703 aa17.05■□□□□ 0.32
NXF1-215ENST00000533440 DCAF8L2P0C7V8 631 aa17.05■□□□□ 0.32
NXF1-215ENST00000533440 BICRAQ9NZM4 1560 aa16.99■□□□□ 0.31
NXF1-215ENST00000533440 MYO15BQ96JP2 1530 aa16.97■□□□□ 0.31
NXF1-215ENST00000533440 SHROOM4Q9ULL8 1493 aa16.74■□□□□ 0.27
NXF1-215ENST00000533440 CECR2Q9BXF3 1484 aa16.7■□□□□ 0.26
NXF1-215ENST00000533440 CC2D2AQ9P2K1 1620 aa16.69■□□□□ 0.26
NXF1-215ENST00000533440 DCAF1Q9Y4B6 1507 aa16.62■□□□□ 0.25
NXF1-215ENST00000533440 ZCCHC6Q5VYS8 1495 aaKnown RBP16.61■□□□□ 0.25
NXF1-215ENST00000533440 EIF4G1Q04637 1599 aaKnown RBP16.59■□□□□ 0.25
NXF1-215ENST00000533440 SCRIBQ14160 1630 aa16.52■□□□□ 0.23
NXF1-215ENST00000533440 DNAJC5Q9H3Z4 198 aa16.48■□□□□ 0.23
NXF1-215ENST00000533440 AEBP2Q6ZN18 517 aaPredicted RBP16.11■□□□□ 0.17
NXF1-215ENST00000533440 CUX2O14529 1486 aa16.1■□□□□ 0.17
NXF1-215ENST00000533440 NCAPD3P42695 1498 aa15.97■□□□□ 0.15
NXF1-215ENST00000533440 ERCC6Q03468 1493 aa15.97■□□□□ 0.15
NXF1-215ENST00000533440 CHIC1Q5VXU3 224 aa15.9■□□□□ 0.14
NXF1-215ENST00000533440 ATAD2BQ9ULI0 1458 aa15.87■□□□□ 0.13
NXF1-215ENST00000533440 HMGXB3Q12766 1538 aa15.81■□□□□ 0.12
NXF1-215ENST00000533440 NESP48681 1621 aa15.79■□□□□ 0.12
NXF1-215ENST00000533440 SMARCA2P51531 1590 aa15.79■□□□□ 0.12
NXF1-215ENST00000533440 SMARCA4P51532 1647 aa15.75■□□□□ 0.11
NXF1-215ENST00000533440 THOC2Q8NI27 1593 aaKnown RBP15.71■□□□□ 0.11
NXF1-215ENST00000533440 BAZ1BQ9UIG0 1483 aaKnown RBP15.67■□□□□ 0.1
NXF1-215ENST00000533440 LAMC3Q9Y6N6 1575 aa15.64■□□□□ 0.09
NXF1-215ENST00000533440 PEG3Q9GZU2 1588 aa15.63■□□□□ 0.09
NXF1-215ENST00000533440 BAZ1AQ9NRL2 1556 aaPredicted RBP15.62■□□□□ 0.09
NXF1-215ENST00000533440 PDS5BQ9NTI5 1447 aa15.57■□□□□ 0.08
NXF1-215ENST00000533440 KIF21AQ7Z4S6 1674 aa15.57■□□□□ 0.08
NXF1-215ENST00000533440 TRIM41Q8WV44 630 aa15.55■□□□□ 0.08
NXF1-215ENST00000533440 MROH2BQ7Z745 1585 aa15.49■□□□□ 0.07
NXF1-215ENST00000533440 CADPSQ9ULU8 1353 aa15.46■□□□□ 0.07
NXF1-215ENST00000533440 MRC2Q9UBG0 1479 aa15.45■□□□□ 0.06
NXF1-215ENST00000533440 WDR62O43379 1518 aa15.43■□□□□ 0.06
NXF1-215ENST00000533440 CEP164Q9UPV0 1460 aa15.31■□□□□ 0.04
NXF1-215ENST00000533440 OSCARQ8IYS5 282 aa15.29■□□□□ 0.04
NXF1-215ENST00000533440 FANCD2Q9BXW9 1451 aa15.27■□□□□ 0.03
NXF1-215ENST00000533440 WIZO95785 1651 aa15.26■□□□□ 0.03
NXF1-215ENST00000533440 CFTRP13569 1480 aa15.22■□□□□ 0.03
NXF1-215ENST00000533440 URB2Q14146 1524 aaKnown RBP15.17■□□□□ 0.02
NXF1-215ENST00000533440 RIMBP3CA6NJZ7 1639 aa15.12■□□□□ 0.01
NXF1-215ENST00000533440 RIMBP3BA6NNM3 1639 aa15.12■□□□□ 0.01
NXF1-215ENST00000533440 RIMBP3Q9UFD9 1639 aa15.12■□□□□ 0.01
NXF1-215ENST00000533440 TOP2AP11388 1531 aaKnown RBP15.07■□□□□ 0
NXF1-215ENST00000533440 RSF1Q96T23 1441 aaPredicted RBP15.06■□□□□ 0
NXF1-215ENST00000533440 ARHGEF11O15085 1522 aa15.05■□□□□ -0
NXF1-215ENST00000533440 ZNF608Q9ULD9 1512 aaPredicted RBP15.03■□□□□ -0
NXF1-215ENST00000533440 IFT140Q96RY7 1462 aa15.03■□□□□ -0
NXF1-215ENST00000533440 PRDM2Q13029 1718 aa15□□□□□ -0.01
NXF1-215ENST00000533440 TOPBP1Q92547 1522 aa14.95□□□□□ -0.02
NXF1-215ENST00000533440 CYB5RLQ6IPT4 315 aa14.94□□□□□ -0.02
NXF1-215ENST00000533440 EIF4G3O43432 1585 aaKnown RBP14.92□□□□□ -0.02
NXF1-215ENST00000533440 CCDC88BA6NC98 1476 aa14.9□□□□□ -0.02
NXF1-215ENST00000533440 ABCC8Q09428 1581 aa14.9□□□□□ -0.02
NXF1-215ENST00000533440 ARAP1Q96P48 1450 aa14.89□□□□□ -0.03
NXF1-215ENST00000533440 DNMBPQ6XZF7 1577 aa14.86□□□□□ -0.03
NXF1-215ENST00000533440 TRHP20396 242 aaPredicted RBP14.86□□□□□ -0.03
NXF1-215ENST00000533440 CHD1O14646 1710 aa14.86□□□□□ -0.03
NXF1-215ENST00000533440 AQRO60306 1485 aaKnown RBP eCLIP14.85□□□□□ -0.032e-12■■■■□ 25.3
NXF1-215ENST00000533440 TARBP1Q13395 1621 aaKnown RBP14.84□□□□□ -0.03
NXF1-215ENST00000533440 POLA1P09884 1462 aaPredicted RBP14.78□□□□□ -0.04
NXF1-215ENST00000533440 FBLN2P98095 1184 aa14.78□□□□□ -0.04
NXF1-215ENST00000533440 RAD54L2Q9Y4B4 1467 aa14.72□□□□□ -0.05
NXF1-215ENST00000533440 CLASP1Q7Z460 1538 aa14.71□□□□□ -0.05
NXF1-215ENST00000533440 TDRD9Q8NDG6 1382 aaKnown RBP14.71□□□□□ -0.06
NXF1-215ENST00000533440 SOGA1O94964 1423 aa14.69□□□□□ -0.06
NXF1-215ENST00000533440 SNAPC4Q5SXM2 1469 aa14.69□□□□□ -0.06
NXF1-215ENST00000533440 WDR97A6NE52 1622 aa14.68□□□□□ -0.06
NXF1-215ENST00000533440 SYNJ1O43426 1573 aa14.65□□□□□ -0.06
NXF1-215ENST00000533440 MAGI1Q96QZ7 1491 aaPredicted RBP14.64□□□□□ -0.07
NXF1-215ENST00000533440 CHMP7Q8WUX9 453 aaPredicted RBP14.64□□□□□ -0.07
NXF1-215ENST00000533440 FGD5Q6ZNL6 1462 aa14.63□□□□□ -0.07
NXF1-215ENST00000533440 GRIN2BQ13224 1484 aa14.61□□□□□ -0.07
NXF1-215ENST00000533440 SYNJ2O15056 1496 aa14.6□□□□□ -0.07
NXF1-215ENST00000533440 GAPVD1Q14C86 1478 aa14.57□□□□□ -0.08
NXF1-215ENST00000533440 CUX1P39880 1505 aa14.56□□□□□ -0.08
NXF1-215ENST00000533440 PBRM1Q86U86 1689 aa14.5□□□□□ -0.09
NXF1-215ENST00000533440 ABCA10Q8WWZ4 1543 aa14.46□□□□□ -0.1
NXF1-215ENST00000533440 ABCA5Q8WWZ7 1642 aa14.45□□□□□ -0.1
NXF1-215ENST00000533440 ERCC6L2Q5T890 1561 aa14.45□□□□□ -0.1
NXF1-215ENST00000533440 GRIN2AQ12879 1464 aa14.42□□□□□ -0.1
NXF1-215ENST00000533440 NUP160Q12769 1436 aa14.41□□□□□ -0.1
NXF1-215ENST00000533440 CEP170Q5SW79 1584 aa14.4□□□□□ -0.1
NXF1-215ENST00000533440 SHROOM2Q13796 1616 aa14.37□□□□□ -0.11
NXF1-215ENST00000533440 ADAMTS12P58397 1594 aa14.36□□□□□ -0.11
NXF1-215ENST00000533440 KIF13AQ9H1H9 1805 aa14.34□□□□□ -0.11
NXF1-215ENST00000533440 FHAD1B1AJZ9 1412 aa14.32□□□□□ -0.12
NXF1-215ENST00000533440 WRNQ14191 1432 aaPredicted RBP eCLIP14.32□□□□□ -0.12
NXF1-215ENST00000533440 ERICH3Q5RHP9 1530 aa14.26□□□□□ -0.13
NXF1-215ENST00000533440 PRG4Q92954 1404 aaPredicted RBP14.26□□□□□ -0.13
NXF1-215ENST00000533440 ABCC10Q5T3U5 1492 aa14.25□□□□□ -0.13
NXF1-215ENST00000533440 BIVM-ERCC5R4GMW8 1640 aa14.25□□□□□ -0.13
NXF1-215ENST00000533440 TOP2BQ02880 1626 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms