RNA–Protein interactions for RNA: ENST00000533196.1

SMPD1-209, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 3

Gene SMPD1, Length 425 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-209ENST00000533196 NISCHQ9Y2I1 1504 aa58.06■■■■■ 6.88
SMPD1-209ENST00000533196 CCDC180Q9P1Z9 1646 aa51.97■■■■■ 5.91
SMPD1-209ENST00000533196 ABCC9O60706 1549 aa51.31■■■■■ 5.8
SMPD1-209ENST00000533196 RB1CC1Q8TDY2 1594 aa49.2■■■■■ 5.47
SMPD1-209ENST00000533196 NACADO15069 1562 aa49■■■■■ 5.43
SMPD1-209ENST00000533196 DCAF8L2P0C7V8 631 aa48.65■■■■■ 5.38
SMPD1-209ENST00000533196 MYO15BQ96JP2 1530 aa48.56■■■■■ 5.36
SMPD1-209ENST00000533196 ZCCHC6Q5VYS8 1495 aaKnown RBP48.23■■■■■ 5.31
SMPD1-209ENST00000533196 DCAF1Q9Y4B6 1507 aa48.08■■■■■ 5.29
SMPD1-209ENST00000533196 UNC13AQ9UPW8 1703 aa48.04■■■■■ 5.28
SMPD1-209ENST00000533196 PABPN1Q86U42 306 aaKnown RBP eCLIP47.8■■■■■ 5.24
SMPD1-209ENST00000533196 BICRAQ9NZM4 1560 aa47.67■■■■■ 5.22
SMPD1-209ENST00000533196 DNAJC5BQ9UF47 199 aa47.64■■■■■ 5.22
SMPD1-209ENST00000533196 SHROOM4Q9ULL8 1493 aa47.26■■■■■ 5.16
SMPD1-209ENST00000533196 SCRIBQ14160 1630 aa47.23■■■■■ 5.15
SMPD1-209ENST00000533196 EIF4G1Q04637 1599 aaKnown RBP46.48■■■■■ 5.03
SMPD1-209ENST00000533196 CC2D2AQ9P2K1 1620 aa46.45■■■■■ 5.03
SMPD1-209ENST00000533196 CECR2Q9BXF3 1484 aa46.24■■■■■ 4.99
SMPD1-209ENST00000533196 NCAPD3P42695 1498 aa45.21■■■■■ 4.83
SMPD1-209ENST00000533196 SMARCA4P51532 1647 aa45.19■■■■■ 4.82
SMPD1-209ENST00000533196 ATAD2BQ9ULI0 1458 aa45.1■■■■■ 4.81
SMPD1-209ENST00000533196 BAZ1AQ9NRL2 1556 aaPredicted RBP45.07■■■■■ 4.81
SMPD1-209ENST00000533196 SMARCA2P51531 1590 aa45.05■■■■■ 4.8
SMPD1-209ENST00000533196 HMGXB3Q12766 1538 aa44.93■■■■■ 4.78
SMPD1-209ENST00000533196 PEG3Q9GZU2 1588 aa44.81■■■■■ 4.76
SMPD1-209ENST00000533196 BAZ1BQ9UIG0 1483 aaKnown RBP44.68■■■■■ 4.74
SMPD1-209ENST00000533196 MROH2BQ7Z745 1585 aa44.68■■■■■ 4.74
SMPD1-209ENST00000533196 ERCC6Q03468 1493 aa44.32■■■■■ 4.69
SMPD1-209ENST00000533196 NESP48681 1621 aa44.21■■■■■ 4.67
SMPD1-209ENST00000533196 WIZO95785 1651 aa44.16■■■■■ 4.66
SMPD1-209ENST00000533196 CUX2O14529 1486 aa44.15■■■■■ 4.66
SMPD1-209ENST00000533196 LAMC3Q9Y6N6 1575 aa44.13■■■■■ 4.65
SMPD1-209ENST00000533196 RSF1Q96T23 1441 aaPredicted RBP43.96■■■■■ 4.63
SMPD1-209ENST00000533196 PDS5BQ9NTI5 1447 aa43.84■■■■■ 4.61
SMPD1-209ENST00000533196 CADPSQ9ULU8 1353 aa43.83■■■■■ 4.61
SMPD1-209ENST00000533196 THOC2Q8NI27 1593 aaKnown RBP43.75■■■■■ 4.59
SMPD1-209ENST00000533196 KIF21AQ7Z4S6 1674 aa43.72■■■■■ 4.59
SMPD1-209ENST00000533196 TOP2AP11388 1531 aaKnown RBP43.71■■■■■ 4.59
SMPD1-209ENST00000533196 DNAJC5Q9H3Z4 198 aa43.5■■■■■ 4.55
SMPD1-209ENST00000533196 CFTRP13569 1480 aa43.44■■■■■ 4.54
SMPD1-209ENST00000533196 MRC2Q9UBG0 1479 aa43.4■■■■■ 4.54
SMPD1-209ENST00000533196 CEP164Q9UPV0 1460 aa43.32■■■■■ 4.53
SMPD1-209ENST00000533196 FANCD2Q9BXW9 1451 aa43.31■■■■■ 4.52
SMPD1-209ENST00000533196 WDR62O43379 1518 aa43.29■■■■■ 4.52
SMPD1-209ENST00000533196 CCDC88BA6NC98 1476 aa43.16■■■■■ 4.5
SMPD1-209ENST00000533196 PRDM2Q13029 1718 aa43.12■■■■■ 4.49
SMPD1-209ENST00000533196 URB2Q14146 1524 aaKnown RBP42.89■■■■■ 4.46
SMPD1-209ENST00000533196 ABCC8Q09428 1581 aa42.6■■■■■ 4.41
SMPD1-209ENST00000533196 TOPBP1Q92547 1522 aa42.55■■■■■ 4.4
SMPD1-209ENST00000533196 IFT140Q96RY7 1462 aa42.47■■■■■ 4.39
SMPD1-209ENST00000533196 DNMBPQ6XZF7 1577 aa42.47■■■■■ 4.39
SMPD1-209ENST00000533196 SUPT5HO00267 1087 aaKnown RBP42.27■■■■■ 4.36
SMPD1-209ENST00000533196 ZNF608Q9ULD9 1512 aaPredicted RBP42.25■■■■■ 4.35
SMPD1-209ENST00000533196 OSCARQ8IYS5 282 aa42.18■■■■■ 4.34
SMPD1-209ENST00000533196 TARBP1Q13395 1621 aaKnown RBP42.14■■■■■ 4.34
SMPD1-209ENST00000533196 POLA1P09884 1462 aaPredicted RBP42.13■■■■■ 4.34
SMPD1-209ENST00000533196 EIF4G3O43432 1585 aaKnown RBP42.1■■■■■ 4.33
SMPD1-209ENST00000533196 CUX1P39880 1505 aa41.96■■■■■ 4.31
SMPD1-209ENST00000533196 SOGA1O94964 1423 aa41.95■■■■■ 4.31
SMPD1-209ENST00000533196 AQRO60306 1485 aaKnown RBP eCLIP41.94■■■■■ 4.3
SMPD1-209ENST00000533196 FGD5Q6ZNL6 1462 aa41.93■■■■■ 4.3
SMPD1-209ENST00000533196 RAD54L2Q9Y4B4 1467 aa41.92■■■■■ 4.3
SMPD1-209ENST00000533196 WDR97A6NE52 1622 aa41.87■■■■■ 4.29
SMPD1-209ENST00000533196 TDRD9Q8NDG6 1382 aaKnown RBP41.75■■■■■ 4.27
SMPD1-209ENST00000533196 CHD1O14646 1710 aa41.69■■■■■ 4.27
SMPD1-209ENST00000533196 TRIM41Q8WV44 630 aa41.69■■■■■ 4.26
SMPD1-209ENST00000533196 GRIN2BQ13224 1484 aa41.56■■■■■ 4.24
SMPD1-209ENST00000533196 SNAPC4Q5SXM2 1469 aa41.55■■■■■ 4.24
SMPD1-209ENST00000533196 RIMBP3CA6NJZ7 1639 aa41.55■■■■■ 4.24
SMPD1-209ENST00000533196 RIMBP3BA6NNM3 1639 aa41.55■■■■■ 4.24
SMPD1-209ENST00000533196 RIMBP3Q9UFD9 1639 aa41.55■■■■■ 4.24
SMPD1-209ENST00000533196 MAGI1Q96QZ7 1491 aaPredicted RBP41.54■■■■■ 4.24
SMPD1-209ENST00000533196 FBLN2P98095 1184 aa41.54■■■■■ 4.24
SMPD1-209ENST00000533196 ABCA10Q8WWZ4 1543 aa41.54■■■■■ 4.24
SMPD1-209ENST00000533196 BIVM-ERCC5R4GMW8 1640 aa41.49■■■■■ 4.23
SMPD1-209ENST00000533196 TOP2BQ02880 1626 aa41.48■■■■■ 4.23
SMPD1-209ENST00000533196 WRNQ14191 1432 aaPredicted RBP eCLIP41.48■■■■■ 4.23
SMPD1-209ENST00000533196 ARHGEF11O15085 1522 aa41.48■■■■■ 4.23
SMPD1-209ENST00000533196 GAPVD1Q14C86 1478 aa41.47■■■■■ 4.23
SMPD1-209ENST00000533196 PBRM1Q86U86 1689 aa41.43■■■■■ 4.22
SMPD1-209ENST00000533196 ABCA5Q8WWZ7 1642 aa41.42■■■■■ 4.22
SMPD1-209ENST00000533196 CHMP7Q8WUX9 453 aaPredicted RBP41.38■■■■■ 4.21
SMPD1-209ENST00000533196 SYNJ1O43426 1573 aa41.37■■■■■ 4.21
SMPD1-209ENST00000533196 SYNJ2O15056 1496 aa41.37■■■■■ 4.21
SMPD1-209ENST00000533196 CLASP1Q7Z460 1538 aa41.24■■■■■ 4.19
SMPD1-209ENST00000533196 CYB5RLQ6IPT4 315 aa41.08■■■■■ 4.17
SMPD1-209ENST00000533196 ARAP1Q96P48 1450 aa41.08■■■■■ 4.17
SMPD1-209ENST00000533196 ADAMTS12P58397 1594 aa41.06■■■■■ 4.16
SMPD1-209ENST00000533196 ERICH3Q5RHP9 1530 aa41.05■■■■■ 4.16
SMPD1-209ENST00000533196 GRIN2AQ12879 1464 aa41.02■■■■■ 4.16
SMPD1-209ENST00000533196 FHAD1B1AJZ9 1412 aa40.99■■■■■ 4.15
SMPD1-209ENST00000533196 NUP160Q12769 1436 aa40.88■■■■■ 4.13
SMPD1-209ENST00000533196 CEP170Q5SW79 1584 aa40.81■■■■■ 4.12
SMPD1-209ENST00000533196 KIF27Q86VH2 1401 aa40.68■■■■■ 4.1
SMPD1-209ENST00000533196 SHROOM2Q13796 1616 aa40.66■■■■■ 4.1
SMPD1-209ENST00000533196 IGF1RP08069 1367 aa40.58■■■■■ 4.09
SMPD1-209ENST00000533196 CUL7Q14999 1698 aa40.56■■■■■ 4.08
SMPD1-209ENST00000533196 ERCC6L2Q5T890 1561 aa40.54■■■■■ 4.08
SMPD1-209ENST00000533196 TRHP20396 242 aaPredicted RBP40.46■■■■■ 4.07
SMPD1-209ENST00000533196 RUSC2Q8N2Y8 1516 aa40.46■■■■■ 4.07
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms