RNA–Protein interactions for RNA: ENST00000533123.5

SMPD1-208, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene SMPD1, Length 2,211 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-208ENST00000533123 NISCHQ9Y2I1 1504 aa42.85■■■■■ 4.45
SMPD1-208ENST00000533123 CCDC180Q9P1Z9 1646 aa37.58■■■■□ 3.61
SMPD1-208ENST00000533123 ABCC9O60706 1549 aa36.12■■■■□ 3.37
SMPD1-208ENST00000533123 ZCCHC6Q5VYS8 1495 aaKnown RBP35.87■■■■□ 3.33
SMPD1-208ENST00000533123 DCAF8L2P0C7V8 631 aa35.68■■■■□ 3.3
SMPD1-208ENST00000533123 DCAF1Q9Y4B6 1507 aa35.39■■■■□ 3.26
SMPD1-208ENST00000533123 MYO15BQ96JP2 1530 aa35.18■■■■□ 3.22
SMPD1-208ENST00000533123 NACADO15069 1562 aa35.16■■■■□ 3.22
SMPD1-208ENST00000533123 RB1CC1Q8TDY2 1594 aa35■■■■□ 3.19
SMPD1-208ENST00000533123 SHROOM4Q9ULL8 1493 aa34.63■■■■□ 3.13
SMPD1-208ENST00000533123 SCRIBQ14160 1630 aa34.53■■■■□ 3.12
SMPD1-208ENST00000533123 UNC13AQ9UPW8 1703 aa34.27■■■■□ 3.08
SMPD1-208ENST00000533123 PABPN1Q86U42 306 aaKnown RBP eCLIP33.99■■■■□ 3.03
SMPD1-208ENST00000533123 BICRAQ9NZM4 1560 aa33.96■■■■□ 3.03
SMPD1-208ENST00000533123 CECR2Q9BXF3 1484 aa33.38■■■□□ 2.93
SMPD1-208ENST00000533123 BAZ1AQ9NRL2 1556 aaPredicted RBP33.12■■■□□ 2.89
SMPD1-208ENST00000533123 MROH2BQ7Z745 1585 aa33.1■■■□□ 2.89
SMPD1-208ENST00000533123 SUPT5HO00267 1087 aaKnown RBP33.06■■■□□ 2.88
SMPD1-208ENST00000533123 SMARCA4P51532 1647 aa33.05■■■□□ 2.88
SMPD1-208ENST00000533123 RSF1Q96T23 1441 aaPredicted RBP33.04■■■□□ 2.88
SMPD1-208ENST00000533123 EIF4G1Q04637 1599 aaKnown RBP32.99■■■□□ 2.87
SMPD1-208ENST00000533123 WIZO95785 1651 aa32.8■■■□□ 2.84
SMPD1-208ENST00000533123 ATAD2BQ9ULI0 1458 aa32.67■■■□□ 2.82
SMPD1-208ENST00000533123 PEG3Q9GZU2 1588 aa32.65■■■□□ 2.82
SMPD1-208ENST00000533123 CC2D2AQ9P2K1 1620 aa32.65■■■□□ 2.82
SMPD1-208ENST00000533123 SMARCA2P51531 1590 aa32.61■■■□□ 2.81
SMPD1-208ENST00000533123 NCAPD3P42695 1498 aa32.47■■■□□ 2.79
SMPD1-208ENST00000533123 BAZ1BQ9UIG0 1483 aaKnown RBP32.45■■■□□ 2.79
SMPD1-208ENST00000533123 TOP2AP11388 1531 aaKnown RBP32.42■■■□□ 2.78
SMPD1-208ENST00000533123 DNAJC5BQ9UF47 199 aa32.41■■■□□ 2.78
SMPD1-208ENST00000533123 HMGXB3Q12766 1538 aa32.35■■■□□ 2.77
SMPD1-208ENST00000533123 CCDC88BA6NC98 1476 aa32.11■■■□□ 2.73
SMPD1-208ENST00000533123 CADPSQ9ULU8 1353 aa31.62■■■□□ 2.65
SMPD1-208ENST00000533123 CFTRP13569 1480 aa31.6■■■□□ 2.65
SMPD1-208ENST00000533123 NESP48681 1621 aa31.54■■■□□ 2.64
SMPD1-208ENST00000533123 LAMC3Q9Y6N6 1575 aa31.45■■■□□ 2.62
SMPD1-208ENST00000533123 PRDM2Q13029 1718 aa31.35■■■□□ 2.61
SMPD1-208ENST00000533123 CHIC1Q5VXU3 224 aa31.32■■■□□ 2.6
SMPD1-208ENST00000533123 ABCC8Q09428 1581 aa31.26■■■□□ 2.59
SMPD1-208ENST00000533123 FANCD2Q9BXW9 1451 aa31.26■■■□□ 2.59
SMPD1-208ENST00000533123 PDS5BQ9NTI5 1447 aa31.24■■■□□ 2.59
SMPD1-208ENST00000533123 WRNQ14191 1432 aaPredicted RBP eCLIP31.12■■■□□ 2.57
SMPD1-208ENST00000533123 KIF21AQ7Z4S6 1674 aa31.12■■■□□ 2.57
SMPD1-208ENST00000533123 CEP164Q9UPV0 1460 aa31.11■■■□□ 2.57
SMPD1-208ENST00000533123 TRIM41Q8WV44 630 aa31.1■■■□□ 2.57
SMPD1-208ENST00000533123 ERCC6Q03468 1493 aa31.02■■■□□ 2.56
SMPD1-208ENST00000533123 SYNJ1O43426 1573 aa31■■■□□ 2.55
SMPD1-208ENST00000533123 CUX1P39880 1505 aa30.98■■■□□ 2.55
SMPD1-208ENST00000533123 TOP2BQ02880 1626 aa30.91■■■□□ 2.54
SMPD1-208ENST00000533123 URB2Q14146 1524 aaKnown RBP30.9■■■□□ 2.54
SMPD1-208ENST00000533123 BIVM-ERCC5R4GMW8 1640 aa30.87■■■□□ 2.53
SMPD1-208ENST00000533123 MRC2Q9UBG0 1479 aa30.86■■■□□ 2.53
SMPD1-208ENST00000533123 TOPBP1Q92547 1522 aa30.85■■■□□ 2.53
SMPD1-208ENST00000533123 DNMBPQ6XZF7 1577 aa30.85■■■□□ 2.53
SMPD1-208ENST00000533123 THOC2Q8NI27 1593 aaKnown RBP30.74■■■□□ 2.51
SMPD1-208ENST00000533123 FGD5Q6ZNL6 1462 aa30.74■■■□□ 2.51
SMPD1-208ENST00000533123 WDR62O43379 1518 aa30.71■■■□□ 2.51
SMPD1-208ENST00000533123 POLA1P09884 1462 aaPredicted RBP30.67■■■□□ 2.5
SMPD1-208ENST00000533123 RAD54L2Q9Y4B4 1467 aa30.59■■■□□ 2.49
SMPD1-208ENST00000533123 SOGA1O94964 1423 aa30.58■■■□□ 2.49
SMPD1-208ENST00000533123 FAM9AQ8IZU1 332 aaPredicted RBP30.55■■■□□ 2.48
SMPD1-208ENST00000533123 CUX2O14529 1486 aa30.52■■■□□ 2.48
SMPD1-208ENST00000533123 RUSC2Q8N2Y8 1516 aa30.5■■■□□ 2.47
SMPD1-208ENST00000533123 ABCA10Q8WWZ4 1543 aa30.43■■■□□ 2.46
SMPD1-208ENST00000533123 TARBP1Q13395 1621 aaKnown RBP30.43■■■□□ 2.46
SMPD1-208ENST00000533123 IFT140Q96RY7 1462 aa30.39■■■□□ 2.46
SMPD1-208ENST00000533123 KIF27Q86VH2 1401 aa30.38■■■□□ 2.45
SMPD1-208ENST00000533123 TDRD9Q8NDG6 1382 aaKnown RBP30.36■■■□□ 2.45
SMPD1-208ENST00000533123 WDR97A6NE52 1622 aa30.35■■■□□ 2.45
SMPD1-208ENST00000533123 EEA1Q15075 1411 aa30.33■■■□□ 2.45
SMPD1-208ENST00000533123 CSRNP3Q8WYN3 585 aa30.29■■■□□ 2.44
SMPD1-208ENST00000533123 ZNF608Q9ULD9 1512 aaPredicted RBP30.29■■■□□ 2.44
SMPD1-208ENST00000533123 AQRO60306 1485 aaKnown RBP eCLIP30.25■■■□□ 2.43
SMPD1-208ENST00000533123 GAPVD1Q14C86 1478 aa30.22■■■□□ 2.43
SMPD1-208ENST00000533123 ABCA5Q8WWZ7 1642 aa30.22■■■□□ 2.43
SMPD1-208ENST00000533123 IGF1RP08069 1367 aa30.19■■■□□ 2.42
SMPD1-208ENST00000533123 LOC105371045A0A1W2PR82 267 aa30.16■■■□□ 2.42
SMPD1-208ENST00000533123 EHMT2Q96KQ7 1210 aa30.16■■■□□ 2.42
SMPD1-208ENST00000533123 EIF4G3O43432 1585 aaKnown RBP30.14■■■□□ 2.42
SMPD1-208ENST00000533123 ERICH3Q5RHP9 1530 aa30.06■■■□□ 2.4
SMPD1-208ENST00000533123 GRIN2BQ13224 1484 aa30.06■■■□□ 2.4
SMPD1-208ENST00000533123 PBRM1Q86U86 1689 aa30.05■■■□□ 2.4
SMPD1-208ENST00000533123 PRXQ9BXM0 1461 aa30.03■■■□□ 2.4
SMPD1-208ENST00000533123 CARMIL1Q5VZK9 1371 aa30.02■■■□□ 2.4
SMPD1-208ENST00000533123 KIF21BO75037 1637 aa29.97■■■□□ 2.39
SMPD1-208ENST00000533123 RAPGEF2Q9Y4G8 1499 aa29.97■■■□□ 2.39
SMPD1-208ENST00000533123 CUL7Q14999 1698 aa29.94■■■□□ 2.38
SMPD1-208ENST00000533123 SNAPC4Q5SXM2 1469 aa29.93■■■□□ 2.38
SMPD1-208ENST00000533123 GOLGA3Q08378 1498 aa29.91■■■□□ 2.38
SMPD1-208ENST00000533123 UBTFP17480 764 aaKnown RBP29.88■■■□□ 2.37
SMPD1-208ENST00000533123 FHAD1B1AJZ9 1412 aa29.88■■■□□ 2.37
SMPD1-208ENST00000533123 ADAMTS12P58397 1594 aa29.86■■■□□ 2.37
SMPD1-208ENST00000533123 MAGI1Q96QZ7 1491 aaPredicted RBP29.86■■■□□ 2.37
SMPD1-208ENST00000533123 FBLN2P98095 1184 aa29.78■■■□□ 2.36
SMPD1-208ENST00000533123 CHMP7Q8WUX9 453 aaPredicted RBP29.77■■■□□ 2.36
SMPD1-208ENST00000533123 SYNJ2O15056 1496 aa29.76■■■□□ 2.35
SMPD1-208ENST00000533123 TNIKQ9UKE5 1360 aa29.72■■■□□ 2.35
SMPD1-208ENST00000533123 GRIN2AQ12879 1464 aa29.69■■■□□ 2.34
SMPD1-208ENST00000533123 RANGAP1P46060 587 aaPredicted RBP29.6■■■□□ 2.33
SMPD1-208ENST00000533123 CHD1O14646 1710 aa29.59■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 357.5 ms