RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-223ENST00000533079 NISCHQ9Y2I1 1504 aa31.9■■■□□ 2.7
CAPN1-223ENST00000533079 ABCC9O60706 1549 aa29.09■■■□□ 2.25
CAPN1-223ENST00000533079 CCDC180Q9P1Z9 1646 aa28.93■■■□□ 2.22
CAPN1-223ENST00000533079 RB1CC1Q8TDY2 1594 aa27.66■■■□□ 2.02
CAPN1-223ENST00000533079 DNAJC5BQ9UF47 199 aa27.5■■□□□ 1.99
CAPN1-223ENST00000533079 NACADO15069 1562 aa27.39■■□□□ 1.97
CAPN1-223ENST00000533079 UNC13AQ9UPW8 1703 aa26.99■■□□□ 1.91
CAPN1-223ENST00000533079 MYO15BQ96JP2 1530 aa26.95■■□□□ 1.91
CAPN1-223ENST00000533079 PABPN1Q86U42 306 aaKnown RBP eCLIP26.9■■□□□ 1.9
CAPN1-223ENST00000533079 DCAF8L2P0C7V8 631 aa26.82■■□□□ 1.88
CAPN1-223ENST00000533079 BICRAQ9NZM4 1560 aa26.8■■□□□ 1.88
CAPN1-223ENST00000533079 SHROOM4Q9ULL8 1493 aa26.61■■□□□ 1.85
CAPN1-223ENST00000533079 DCAF1Q9Y4B6 1507 aa26.44■■□□□ 1.82
CAPN1-223ENST00000533079 ZCCHC6Q5VYS8 1495 aaKnown RBP26.4■■□□□ 1.82
CAPN1-223ENST00000533079 CC2D2AQ9P2K1 1620 aa26.33■■□□□ 1.81
CAPN1-223ENST00000533079 CECR2Q9BXF3 1484 aa26.3■■□□□ 1.8
CAPN1-223ENST00000533079 EIF4G1Q04637 1599 aaKnown RBP26.2■■□□□ 1.79
CAPN1-223ENST00000533079 SCRIBQ14160 1630 aa26.17■■□□□ 1.78
CAPN1-223ENST00000533079 DNAJC5Q9H3Z4 198 aa25.64■■□□□ 1.7
CAPN1-223ENST00000533079 CUX2O14529 1486 aa25.39■■□□□ 1.65
CAPN1-223ENST00000533079 NCAPD3P42695 1498 aa25.23■■□□□ 1.63
CAPN1-223ENST00000533079 ERCC6Q03468 1493 aa25.21■■□□□ 1.63
CAPN1-223ENST00000533079 HMGXB3Q12766 1538 aa25.09■■□□□ 1.61
CAPN1-223ENST00000533079 ATAD2BQ9ULI0 1458 aa25.07■■□□□ 1.6
CAPN1-223ENST00000533079 SMARCA2P51531 1590 aa25.06■■□□□ 1.6
CAPN1-223ENST00000533079 SMARCA4P51532 1647 aa24.99■■□□□ 1.59
CAPN1-223ENST00000533079 NESP48681 1621 aa24.86■■□□□ 1.57
CAPN1-223ENST00000533079 THOC2Q8NI27 1593 aaKnown RBP24.84■■□□□ 1.57
CAPN1-223ENST00000533079 BAZ1AQ9NRL2 1556 aaPredicted RBP24.84■■□□□ 1.57
CAPN1-223ENST00000533079 BAZ1BQ9UIG0 1483 aaKnown RBP24.83■■□□□ 1.57
CAPN1-223ENST00000533079 PEG3Q9GZU2 1588 aa24.82■■□□□ 1.56
CAPN1-223ENST00000533079 LAMC3Q9Y6N6 1575 aa24.8■■□□□ 1.56
CAPN1-223ENST00000533079 KIF21AQ7Z4S6 1674 aa24.62■■□□□ 1.53
CAPN1-223ENST00000533079 PDS5BQ9NTI5 1447 aa24.6■■□□□ 1.53
CAPN1-223ENST00000533079 MROH2BQ7Z745 1585 aa24.51■■□□□ 1.51
CAPN1-223ENST00000533079 MRC2Q9UBG0 1479 aa24.42■■□□□ 1.5
CAPN1-223ENST00000533079 WDR62O43379 1518 aa24.41■■□□□ 1.5
CAPN1-223ENST00000533079 CADPSQ9ULU8 1353 aa24.4■■□□□ 1.5
CAPN1-223ENST00000533079 TRIM41Q8WV44 630 aa24.27■■□□□ 1.48
CAPN1-223ENST00000533079 CEP164Q9UPV0 1460 aa24.25■■□□□ 1.47
CAPN1-223ENST00000533079 WIZO95785 1651 aa24.21■■□□□ 1.47
CAPN1-223ENST00000533079 FANCD2Q9BXW9 1451 aa24.15■■□□□ 1.46
CAPN1-223ENST00000533079 CFTRP13569 1480 aa24.09■■□□□ 1.45
CAPN1-223ENST00000533079 OSCARQ8IYS5 282 aa23.99■■□□□ 1.43
CAPN1-223ENST00000533079 TOP2AP11388 1531 aaKnown RBP23.96■■□□□ 1.43
CAPN1-223ENST00000533079 URB2Q14146 1524 aaKnown RBP23.96■■□□□ 1.43
CAPN1-223ENST00000533079 PRDM2Q13029 1718 aa23.91■■□□□ 1.42
CAPN1-223ENST00000533079 RSF1Q96T23 1441 aaPredicted RBP23.85■■□□□ 1.41
CAPN1-223ENST00000533079 RIMBP3CA6NJZ7 1639 aa23.82■■□□□ 1.4
CAPN1-223ENST00000533079 RIMBP3BA6NNM3 1639 aa23.82■■□□□ 1.4
CAPN1-223ENST00000533079 RIMBP3Q9UFD9 1639 aa23.82■■□□□ 1.4
CAPN1-223ENST00000533079 IFT140Q96RY7 1462 aa23.78■■□□□ 1.4
CAPN1-223ENST00000533079 ARHGEF11O15085 1522 aa23.7■■□□□ 1.38
CAPN1-223ENST00000533079 ZNF608Q9ULD9 1512 aaPredicted RBP23.69■■□□□ 1.38
CAPN1-223ENST00000533079 EIF4G3O43432 1585 aaKnown RBP23.65■■□□□ 1.38
CAPN1-223ENST00000533079 TOPBP1Q92547 1522 aa23.65■■□□□ 1.38
CAPN1-223ENST00000533079 ABCC8Q09428 1581 aa23.65■■□□□ 1.38
CAPN1-223ENST00000533079 CCDC88BA6NC98 1476 aa23.59■■□□□ 1.37
CAPN1-223ENST00000533079 DNMBPQ6XZF7 1577 aa23.58■■□□□ 1.37
CAPN1-223ENST00000533079 CHD1O14646 1710 aa23.5■■□□□ 1.35
CAPN1-223ENST00000533079 TARBP1Q13395 1621 aaKnown RBP23.5■■□□□ 1.35
CAPN1-223ENST00000533079 ARAP1Q96P48 1450 aa23.43■■□□□ 1.34
CAPN1-223ENST00000533079 AQRO60306 1485 aaKnown RBP eCLIP23.39■■□□□ 1.341e-6■■■■■ 27.1
CAPN1-223ENST00000533079 CYB5RLQ6IPT4 315 aa23.39■■□□□ 1.33
CAPN1-223ENST00000533079 POLA1P09884 1462 aaPredicted RBP23.38■■□□□ 1.33
CAPN1-223ENST00000533079 WDR97A6NE52 1622 aa23.38■■□□□ 1.33
CAPN1-223ENST00000533079 TRHP20396 242 aaPredicted RBP23.27■■□□□ 1.32
CAPN1-223ENST00000533079 CLASP1Q7Z460 1538 aa23.27■■□□□ 1.32
CAPN1-223ENST00000533079 FBLN2P98095 1184 aa23.25■■□□□ 1.31
CAPN1-223ENST00000533079 SYNJ1O43426 1573 aa23.23■■□□□ 1.31
CAPN1-223ENST00000533079 SOGA1O94964 1423 aa23.22■■□□□ 1.31
CAPN1-223ENST00000533079 SNAPC4Q5SXM2 1469 aa23.22■■□□□ 1.31
CAPN1-223ENST00000533079 MAGI1Q96QZ7 1491 aaPredicted RBP23.22■■□□□ 1.31
CAPN1-223ENST00000533079 RAD54L2Q9Y4B4 1467 aa23.22■■□□□ 1.31
CAPN1-223ENST00000533079 FGD5Q6ZNL6 1462 aa23.17■■□□□ 1.3
CAPN1-223ENST00000533079 TDRD9Q8NDG6 1382 aaKnown RBP23.16■■□□□ 1.3
CAPN1-223ENST00000533079 GRIN2BQ13224 1484 aa23.13■■□□□ 1.29
CAPN1-223ENST00000533079 SYNJ2O15056 1496 aa23.11■■□□□ 1.29
CAPN1-223ENST00000533079 CHMP7Q8WUX9 453 aaPredicted RBP23.08■■□□□ 1.29
CAPN1-223ENST00000533079 CUX1P39880 1505 aa23.08■■□□□ 1.28
CAPN1-223ENST00000533079 PBRM1Q86U86 1689 aa23.05■■□□□ 1.28
CAPN1-223ENST00000533079 GAPVD1Q14C86 1478 aa22.98■■□□□ 1.27
CAPN1-223ENST00000533079 ABCA5Q8WWZ7 1642 aa22.97■■□□□ 1.27
CAPN1-223ENST00000533079 ABCA10Q8WWZ4 1543 aa22.92■■□□□ 1.26
CAPN1-223ENST00000533079 AEBP2Q6ZN18 517 aaPredicted RBP22.92■■□□□ 1.26
CAPN1-223ENST00000533079 GRIN2AQ12879 1464 aa22.84■■□□□ 1.25
CAPN1-223ENST00000533079 ADAMTS12P58397 1594 aa22.81■■□□□ 1.24
CAPN1-223ENST00000533079 NUP160Q12769 1436 aa22.78■■□□□ 1.24
CAPN1-223ENST00000533079 SHROOM2Q13796 1616 aa22.77■■□□□ 1.24
CAPN1-223ENST00000533079 CEP170Q5SW79 1584 aa22.76■■□□□ 1.23
CAPN1-223ENST00000533079 ERCC6L2Q5T890 1561 aa22.76■■□□□ 1.23
CAPN1-223ENST00000533079 WRNQ14191 1432 aaPredicted RBP eCLIP22.73■■□□□ 1.23
CAPN1-223ENST00000533079 BIVM-ERCC5R4GMW8 1640 aa22.7■■□□□ 1.22
CAPN1-223ENST00000533079 FHAD1B1AJZ9 1412 aa22.68■■□□□ 1.22
CAPN1-223ENST00000533079 TOP2BQ02880 1626 aa22.67■■□□□ 1.22
CAPN1-223ENST00000533079 ERICH3Q5RHP9 1530 aa22.67■■□□□ 1.22
CAPN1-223ENST00000533079 KIF13AQ9H1H9 1805 aa22.62■■□□□ 1.21
CAPN1-223ENST00000533079 RUSC2Q8N2Y8 1516 aa22.52■■□□□ 1.2
CAPN1-223ENST00000533079 PRG4Q92954 1404 aaPredicted RBP22.52■■□□□ 1.2
CAPN1-223ENST00000533079 MAPKBP1O60336 1514 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 205.9 ms