RNA–Protein interactions for RNA: ENST00000531857.1

PKP3-208, Transcript of plakophilin 3, human

TSL 4

Gene PKP3, Length 687 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PKP3-208	ENST00000531857	DDX3X	O00571	662 aa	Known RBP eCLIP	17.14	■□□□□ 0.33	3e-24	■■■■■ 37.6
PKP3-208	ENST00000531857	TROVE2	P10155	538 aa	Known RBP eCLIP	15.58	■□□□□ 0.08	5e-10	■■■□□ 18
PKP3-208	ENST00000531857	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	21.36	■■□□□ 1.01	4e-9	■■■□□ 14.6
PKP3-208	ENST00000531857	AATF	Q9NY61	560 aa	Known RBP eCLIP	21.31	■■□□□ 1	8e-9	■■■□□ 14.8
PKP3-208	ENST00000531857	HNRNPK	P61978	463 aa	Known RBP eCLIP	17.67	■□□□□ 0.42	1e-8	■■■■□ 22.4
PKP3-208	ENST00000531857	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	20.9	■□□□□ 0.94	2e-8	■■■■■ 56.1
PKP3-208	ENST00000531857	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	29.09	■■■□□ 2.25	3e-8	■□□□□ 9.7
PKP3-208	ENST00000531857	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	14.21	□□□□□ -0.13	2e-7	■■■□□ 15.9
PKP3-208	ENST00000531857	FMR1	Q06787	632 aa	Known RBP eCLIP	22.88	■■□□□ 1.25	3e-7	■□□□□ 10.6
PKP3-208	ENST00000531857	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	18.1	■□□□□ 0.49	5e-7	■■■■□ 23.7
PKP3-208	ENST00000531857	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	20.68	■□□□□ 0.9	7e-7	■■■■□ 23
PKP3-208	ENST00000531857	AGGF1	Q8N302	714 aa	eCLIP	16.2	■□□□□ 0.18	8e-7	■■■■□ 20
PKP3-208	ENST00000531857	SF3B1	O75533	1304 aa	Known RBP eCLIP	19.18	■□□□□ 0.66	1e-6	■■■■■ 135.5
PKP3-208	ENST00000531857	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	16.47	■□□□□ 0.23	1e-6	■■■■□ 24.8
PKP3-208	ENST00000531857	FXR2	P51116	673 aa	Known RBP eCLIP	18.96	■□□□□ 0.63	2e-6	■□□□□ 9.5
PKP3-208	ENST00000531857	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	16.12	■□□□□ 0.17	2e-6	■■■■■ 45.7
PKP3-208	ENST00000531857	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	18.25	■□□□□ 0.51	2e-6	■■■■■ 352.1
PKP3-208	ENST00000531857	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	20.54	■□□□□ 0.88	2e-6	■■■■□ 20.8
PKP3-208	ENST00000531857	NIPBL	Q6KC79	2804 aa	eCLIP	16.14	■□□□□ 0.17	2e-6	■■■■□ 19.3
PKP3-208	ENST00000531857	NCBP2	P52298	156 aa	Known RBP eCLIP	15.49	■□□□□ 0.07	2e-6	■□□□□ 8.3
PKP3-208	ENST00000531857	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	15.28	■□□□□ 0.04	2e-6	■■■■□ 25.3
PKP3-208	ENST00000531857	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	27.63	■■■□□ 2.01	2e-6	■■■■■ 28.3
PKP3-208	ENST00000531857	EFTUD2	Q15029	972 aa	Known RBP eCLIP	15.97	■□□□□ 0.15	2e-6	■■■■■ 39.1
PKP3-208	ENST00000531857	AQR	O60306	1485 aa	Known RBP eCLIP	32.14	■■■□□ 2.74	2e-6	■■■■■ 27.4
PKP3-208	ENST00000531857	NONO	Q15233	471 aa	Known RBP eCLIP	19.37	■□□□□ 0.69	3e-6	■■□□□ 12.2
PKP3-208	ENST00000531857	RBM15	Q96T37	977 aa	Known RBP eCLIP	17.45	■□□□□ 0.38	5e-6	■■□□□ 11.5
PKP3-208	ENST00000531857	SF3B4	Q15427	424 aa	Known RBP eCLIP	15.8	■□□□□ 0.12	6e-6	■□□□□ 11
PKP3-208	ENST00000531857	EWSR1	Q01844	656 aa	Known RBP eCLIP	12.96	□□□□□ -0.33	7e-6	■■■□□ 16.7
PKP3-208	ENST00000531857	METAP2	P50579	478 aa	Known RBP eCLIP	19.57	■□□□□ 0.72	9e-6	■□□□□ 8.1
PKP3-208	ENST00000531857	SMNDC1	O75940	238 aa	Known RBP eCLIP	15.67	■□□□□ 0.1	9e-6	■■■■□ 21.6

Retrieved 30 of 30 RNA–protein pairs in 15.4 ms