RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 NISCHQ9Y2I1 1504 aa23.65■■□□□ 1.38
CHMP4A-205ENST00000531158 ABCC9O60706 1549 aa21.44■■□□□ 1.02
CHMP4A-205ENST00000531158 CCDC180Q9P1Z9 1646 aa21.37■■□□□ 1.01
CHMP4A-205ENST00000531158 DNAJC5BQ9UF47 199 aa20.87■□□□□ 0.93
CHMP4A-205ENST00000531158 RB1CC1Q8TDY2 1594 aa20.33■□□□□ 0.84
CHMP4A-205ENST00000531158 NACADO15069 1562 aa20.15■□□□□ 0.82
CHMP4A-205ENST00000531158 UNC13AQ9UPW8 1703 aa20.1■□□□□ 0.81
CHMP4A-205ENST00000531158 PABPN1Q86U42 306 aaKnown RBP eCLIP19.87■□□□□ 0.77
CHMP4A-205ENST00000531158 BICRAQ9NZM4 1560 aa19.87■□□□□ 0.77
CHMP4A-205ENST00000531158 DCAF8L2P0C7V8 631 aa19.83■□□□□ 0.77
CHMP4A-205ENST00000531158 MYO15BQ96JP2 1530 aa19.82■□□□□ 0.76
CHMP4A-205ENST00000531158 DNAJC5Q9H3Z4 198 aa19.79■□□□□ 0.76
CHMP4A-205ENST00000531158 ZCCHC6Q5VYS8 1495 aaKnown RBP19.59■□□□□ 0.73
CHMP4A-205ENST00000531158 DCAF1Q9Y4B6 1507 aa19.52■□□□□ 0.72
CHMP4A-205ENST00000531158 SHROOM4Q9ULL8 1493 aa19.44■□□□□ 0.7
CHMP4A-205ENST00000531158 SCRIBQ14160 1630 aa19.43■□□□□ 0.7
CHMP4A-205ENST00000531158 CC2D2AQ9P2K1 1620 aa19.42■□□□□ 0.7
CHMP4A-205ENST00000531158 CECR2Q9BXF3 1484 aa19.35■□□□□ 0.69
CHMP4A-205ENST00000531158 EIF4G1Q04637 1599 aaKnown RBP19.32■□□□□ 0.68
CHMP4A-205ENST00000531158 CUX2O14529 1486 aa18.75■□□□□ 0.59
CHMP4A-205ENST00000531158 TRIM41Q8WV44 630 aa18.63■□□□□ 0.57
CHMP4A-205ENST00000531158 NCAPD3P42695 1498 aa18.58■□□□□ 0.57
CHMP4A-205ENST00000531158 ERCC6Q03468 1493 aa18.55■□□□□ 0.56
CHMP4A-205ENST00000531158 SMARCA4P51532 1647 aa18.53■□□□□ 0.56
CHMP4A-205ENST00000531158 ATAD2BQ9ULI0 1458 aa18.52■□□□□ 0.56
CHMP4A-205ENST00000531158 HMGXB3Q12766 1538 aa18.48■□□□□ 0.55
CHMP4A-205ENST00000531158 SMARCA2P51531 1590 aa18.45■□□□□ 0.54
CHMP4A-205ENST00000531158 NESP48681 1621 aa18.42■□□□□ 0.54
CHMP4A-205ENST00000531158 PEG3Q9GZU2 1588 aa18.35■□□□□ 0.53
CHMP4A-205ENST00000531158 BAZ1AQ9NRL2 1556 aaPredicted RBP18.35■□□□□ 0.53
CHMP4A-205ENST00000531158 THOC2Q8NI27 1593 aaKnown RBP18.32■□□□□ 0.52
CHMP4A-205ENST00000531158 BAZ1BQ9UIG0 1483 aaKnown RBP18.31■□□□□ 0.52
CHMP4A-205ENST00000531158 KIF21AQ7Z4S6 1674 aa18.26■□□□□ 0.51
CHMP4A-205ENST00000531158 MROH2BQ7Z745 1585 aa18.25■□□□□ 0.51
CHMP4A-205ENST00000531158 LAMC3Q9Y6N6 1575 aa18.22■□□□□ 0.51
CHMP4A-205ENST00000531158 WIZO95785 1651 aa18.07■□□□□ 0.48
CHMP4A-205ENST00000531158 PDS5BQ9NTI5 1447 aa18.02■□□□□ 0.48
CHMP4A-205ENST00000531158 WDR62O43379 1518 aa17.98■□□□□ 0.47
CHMP4A-205ENST00000531158 CADPSQ9ULU8 1353 aa17.97■□□□□ 0.47
CHMP4A-205ENST00000531158 MRC2Q9UBG0 1479 aa17.95■□□□□ 0.46
CHMP4A-205ENST00000531158 CEP164Q9UPV0 1460 aa17.83■□□□□ 0.45
CHMP4A-205ENST00000531158 OSCARQ8IYS5 282 aa17.83■□□□□ 0.44
CHMP4A-205ENST00000531158 FANCD2Q9BXW9 1451 aa17.81■□□□□ 0.44
CHMP4A-205ENST00000531158 CFTRP13569 1480 aa17.79■□□□□ 0.44
CHMP4A-205ENST00000531158 TOP2AP11388 1531 aaKnown RBP17.77■□□□□ 0.43
CHMP4A-205ENST00000531158 PRDM2Q13029 1718 aa17.76■□□□□ 0.43
CHMP4A-205ENST00000531158 RSF1Q96T23 1441 aaPredicted RBP17.76■□□□□ 0.43
CHMP4A-205ENST00000531158 AEBP2Q6ZN18 517 aaPredicted RBP17.74■□□□□ 0.43
CHMP4A-205ENST00000531158 URB2Q14146 1524 aaKnown RBP17.73■□□□□ 0.43
CHMP4A-205ENST00000531158 RIMBP3CA6NJZ7 1639 aa17.62■□□□□ 0.41
CHMP4A-205ENST00000531158 RIMBP3BA6NNM3 1639 aa17.62■□□□□ 0.41
CHMP4A-205ENST00000531158 RIMBP3Q9UFD9 1639 aa17.62■□□□□ 0.41
CHMP4A-205ENST00000531158 TRHP20396 242 aaPredicted RBP17.62■□□□□ 0.41
CHMP4A-205ENST00000531158 ZNF608Q9ULD9 1512 aaPredicted RBP17.54■□□□□ 0.4
CHMP4A-205ENST00000531158 CCDC88BA6NC98 1476 aa17.54■□□□□ 0.4
CHMP4A-205ENST00000531158 CYB5RLQ6IPT4 315 aa17.5■□□□□ 0.39
CHMP4A-205ENST00000531158 ARHGEF11O15085 1522 aa17.48■□□□□ 0.39
CHMP4A-205ENST00000531158 TOPBP1Q92547 1522 aa17.48■□□□□ 0.39
CHMP4A-205ENST00000531158 EIF4G3O43432 1585 aaKnown RBP17.48■□□□□ 0.39
CHMP4A-205ENST00000531158 IFT140Q96RY7 1462 aa17.47■□□□□ 0.39
CHMP4A-205ENST00000531158 CHD1O14646 1710 aa17.43■□□□□ 0.38
CHMP4A-205ENST00000531158 DNMBPQ6XZF7 1577 aa17.42■□□□□ 0.38
CHMP4A-205ENST00000531158 TARBP1Q13395 1621 aaKnown RBP17.42■□□□□ 0.38
CHMP4A-205ENST00000531158 ABCC8Q09428 1581 aa17.34■□□□□ 0.37
CHMP4A-205ENST00000531158 AQRO60306 1485 aaKnown RBP eCLIP17.31■□□□□ 0.36
CHMP4A-205ENST00000531158 POLA1P09884 1462 aaPredicted RBP17.31■□□□□ 0.36
CHMP4A-205ENST00000531158 ARAP1Q96P48 1450 aa17.25■□□□□ 0.35
CHMP4A-205ENST00000531158 RAD54L2Q9Y4B4 1467 aa17.24■□□□□ 0.35
CHMP4A-205ENST00000531158 WDR97A6NE52 1622 aa17.18■□□□□ 0.34
CHMP4A-205ENST00000531158 FGD5Q6ZNL6 1462 aa17.17■□□□□ 0.34
CHMP4A-205ENST00000531158 CUX1P39880 1505 aa17.16■□□□□ 0.34
CHMP4A-205ENST00000531158 CLASP1Q7Z460 1538 aa17.16■□□□□ 0.34
CHMP4A-205ENST00000531158 TDRD9Q8NDG6 1382 aaKnown RBP17.15■□□□□ 0.34
CHMP4A-205ENST00000531158 SNAPC4Q5SXM2 1469 aa17.14■□□□□ 0.33
CHMP4A-205ENST00000531158 SOGA1O94964 1423 aa17.13■□□□□ 0.33
CHMP4A-205ENST00000531158 PBRM1Q86U86 1689 aa17.11■□□□□ 0.33
CHMP4A-205ENST00000531158 FBLN2P98095 1184 aa17.1■□□□□ 0.33
CHMP4A-205ENST00000531158 ILDR1Q86SU0 546 aaPredicted RBP17.09■□□□□ 0.33
CHMP4A-205ENST00000531158 MAGI1Q96QZ7 1491 aaPredicted RBP17.06■□□□□ 0.32
CHMP4A-205ENST00000531158 SYNJ1O43426 1573 aa17.06■□□□□ 0.32
CHMP4A-205ENST00000531158 GRIN2BQ13224 1484 aa17.03■□□□□ 0.32
CHMP4A-205ENST00000531158 ABCA5Q8WWZ7 1642 aa17.03■□□□□ 0.32
CHMP4A-205ENST00000531158 SYNJ2O15056 1496 aa17.01■□□□□ 0.31
CHMP4A-205ENST00000531158 GAPVD1Q14C86 1478 aa16.95■□□□□ 0.3
CHMP4A-205ENST00000531158 CHMP7Q8WUX9 453 aaPredicted RBP16.94■□□□□ 0.3
CHMP4A-205ENST00000531158 ABCA10Q8WWZ4 1543 aa16.94■□□□□ 0.3
CHMP4A-205ENST00000531158 ERCC6L2Q5T890 1561 aa16.92■□□□□ 0.3
CHMP4A-205ENST00000531158 BIVM-ERCC5R4GMW8 1640 aa16.88■□□□□ 0.29
CHMP4A-205ENST00000531158 ADAMTS12P58397 1594 aa16.88■□□□□ 0.29
CHMP4A-205ENST00000531158 CEP170Q5SW79 1584 aa16.87■□□□□ 0.29
CHMP4A-205ENST00000531158 GRIN2AQ12879 1464 aa16.85■□□□□ 0.29
CHMP4A-205ENST00000531158 TOP2BQ02880 1626 aa16.85■□□□□ 0.29
CHMP4A-205ENST00000531158 SHROOM2Q13796 1616 aa16.84■□□□□ 0.29
CHMP4A-205ENST00000531158 NUP160Q12769 1436 aa16.8■□□□□ 0.28
CHMP4A-205ENST00000531158 WRNQ14191 1432 aaPredicted RBP eCLIP16.77■□□□□ 0.27
CHMP4A-205ENST00000531158 KIF13AQ9H1H9 1805 aa16.76■□□□□ 0.27
CHMP4A-205ENST00000531158 SUPT5HO00267 1087 aaKnown RBP16.74■□□□□ 0.27
CHMP4A-205ENST00000531158 ERICH3Q5RHP9 1530 aa16.73■□□□□ 0.27
CHMP4A-205ENST00000531158 FHAD1B1AJZ9 1412 aa16.71■□□□□ 0.27
CHMP4A-205ENST00000531158 KDM4FA0A1W2PPD8 638 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms