RNA–Protein interactions for RNA: ENST00000530395.1

SMPD1-204, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

TSL 5

Gene SMPD1, Length 447 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-204ENST00000530395 NISCHQ9Y2I1 1504 aa52.04■■■■■ 5.92
SMPD1-204ENST00000530395 CCDC180Q9P1Z9 1646 aa46.71■■■■■ 5.07
SMPD1-204ENST00000530395 ABCC9O60706 1549 aa46.37■■■■■ 5.01
SMPD1-204ENST00000530395 RB1CC1Q8TDY2 1594 aa44.32■■■■■ 4.69
SMPD1-204ENST00000530395 NACADO15069 1562 aa44.05■■■■■ 4.64
SMPD1-204ENST00000530395 DCAF8L2P0C7V8 631 aa43.77■■■■■ 4.6
SMPD1-204ENST00000530395 MYO15BQ96JP2 1530 aa43.52■■■■■ 4.56
SMPD1-204ENST00000530395 UNC13AQ9UPW8 1703 aa43.33■■■■■ 4.53
SMPD1-204ENST00000530395 ZCCHC6Q5VYS8 1495 aaKnown RBP43.19■■■■■ 4.5
SMPD1-204ENST00000530395 DNAJC5BQ9UF47 199 aa43.16■■■■■ 4.5
SMPD1-204ENST00000530395 PABPN1Q86U42 306 aaKnown RBP eCLIP43.14■■■■■ 4.5
SMPD1-204ENST00000530395 DCAF1Q9Y4B6 1507 aa43.04■■■■■ 4.48
SMPD1-204ENST00000530395 BICRAQ9NZM4 1560 aa42.94■■■■■ 4.46
SMPD1-204ENST00000530395 SCRIBQ14160 1630 aa42.51■■■■■ 4.4
SMPD1-204ENST00000530395 SHROOM4Q9ULL8 1493 aa42.49■■■■■ 4.39
SMPD1-204ENST00000530395 CC2D2AQ9P2K1 1620 aa41.94■■■■■ 4.3
SMPD1-204ENST00000530395 EIF4G1Q04637 1599 aaKnown RBP41.91■■■■■ 4.3
SMPD1-204ENST00000530395 CECR2Q9BXF3 1484 aa41.76■■■■■ 4.28
SMPD1-204ENST00000530395 NCAPD3P42695 1498 aa40.61■■■■■ 4.09
SMPD1-204ENST00000530395 SMARCA4P51532 1647 aa40.59■■■■■ 4.09
SMPD1-204ENST00000530395 ATAD2BQ9ULI0 1458 aa40.51■■■■■ 4.08
SMPD1-204ENST00000530395 SMARCA2P51531 1590 aa40.48■■■■■ 4.07
SMPD1-204ENST00000530395 BAZ1AQ9NRL2 1556 aaPredicted RBP40.43■■■■■ 4.06
SMPD1-204ENST00000530395 HMGXB3Q12766 1538 aa40.39■■■■■ 4.06
SMPD1-204ENST00000530395 BAZ1BQ9UIG0 1483 aaKnown RBP40.19■■■■■ 4.02
SMPD1-204ENST00000530395 PEG3Q9GZU2 1588 aa40.18■■■■■ 4.02
SMPD1-204ENST00000530395 ERCC6Q03468 1493 aa40.07■■■■■ 4.01
SMPD1-204ENST00000530395 MROH2BQ7Z745 1585 aa40.07■■■■■ 4.01
SMPD1-204ENST00000530395 CUX2O14529 1486 aa39.93■■■■□ 3.98
SMPD1-204ENST00000530395 NESP48681 1621 aa39.87■■■■□ 3.97
SMPD1-204ENST00000530395 LAMC3Q9Y6N6 1575 aa39.73■■■■□ 3.95
SMPD1-204ENST00000530395 WIZO95785 1651 aa39.64■■■■□ 3.94
SMPD1-204ENST00000530395 DNAJC5Q9H3Z4 198 aa39.54■■■■□ 3.92
SMPD1-204ENST00000530395 THOC2Q8NI27 1593 aaKnown RBP39.5■■■■□ 3.91
SMPD1-204ENST00000530395 KIF21AQ7Z4S6 1674 aa39.47■■■■□ 3.91
SMPD1-204ENST00000530395 PDS5BQ9NTI5 1447 aa39.47■■■■□ 3.91
SMPD1-204ENST00000530395 CADPSQ9ULU8 1353 aa39.38■■■■□ 3.89
SMPD1-204ENST00000530395 RSF1Q96T23 1441 aaPredicted RBP39.31■■■■□ 3.88
SMPD1-204ENST00000530395 TOP2AP11388 1531 aaKnown RBP39.18■■■■□ 3.86
SMPD1-204ENST00000530395 MRC2Q9UBG0 1479 aa39.11■■■■□ 3.85
SMPD1-204ENST00000530395 WDR62O43379 1518 aa39.01■■■■□ 3.84
SMPD1-204ENST00000530395 CEP164Q9UPV0 1460 aa39.01■■■■□ 3.84
SMPD1-204ENST00000530395 CFTRP13569 1480 aa38.99■■■■□ 3.83
SMPD1-204ENST00000530395 FANCD2Q9BXW9 1451 aa38.96■■■■□ 3.83
SMPD1-204ENST00000530395 PRDM2Q13029 1718 aa38.77■■■■□ 3.8
SMPD1-204ENST00000530395 CCDC88BA6NC98 1476 aa38.68■■■■□ 3.78
SMPD1-204ENST00000530395 URB2Q14146 1524 aaKnown RBP38.6■■■■□ 3.77
SMPD1-204ENST00000530395 TOPBP1Q92547 1522 aa38.24■■■■□ 3.71
SMPD1-204ENST00000530395 ABCC8Q09428 1581 aa38.23■■■■□ 3.71
SMPD1-204ENST00000530395 IFT140Q96RY7 1462 aa38.22■■■■□ 3.71
SMPD1-204ENST00000530395 DNMBPQ6XZF7 1577 aa38.17■■■■□ 3.7
SMPD1-204ENST00000530395 OSCARQ8IYS5 282 aa38.08■■■■□ 3.69
SMPD1-204ENST00000530395 ZNF608Q9ULD9 1512 aaPredicted RBP38.07■■■■□ 3.68
SMPD1-204ENST00000530395 EIF4G3O43432 1585 aaKnown RBP37.96■■■■□ 3.67
SMPD1-204ENST00000530395 TRIM41Q8WV44 630 aa37.93■■■■□ 3.66
SMPD1-204ENST00000530395 TARBP1Q13395 1621 aaKnown RBP37.9■■■■□ 3.66
SMPD1-204ENST00000530395 POLA1P09884 1462 aaPredicted RBP37.86■■■■□ 3.65
SMPD1-204ENST00000530395 AQRO60306 1485 aaKnown RBP eCLIP37.75■■■■□ 3.63
SMPD1-204ENST00000530395 SUPT5HO00267 1087 aaKnown RBP37.72■■■■□ 3.63
SMPD1-204ENST00000530395 RAD54L2Q9Y4B4 1467 aa37.69■■■■□ 3.62
SMPD1-204ENST00000530395 SOGA1O94964 1423 aa37.68■■■■□ 3.62
SMPD1-204ENST00000530395 FGD5Q6ZNL6 1462 aa37.66■■■■□ 3.62
SMPD1-204ENST00000530395 CUX1P39880 1505 aa37.66■■■■□ 3.62
SMPD1-204ENST00000530395 CHD1O14646 1710 aa37.65■■■■□ 3.62
SMPD1-204ENST00000530395 WDR97A6NE52 1622 aa37.62■■■■□ 3.61
SMPD1-204ENST00000530395 RIMBP3CA6NJZ7 1639 aa37.61■■■■□ 3.61
SMPD1-204ENST00000530395 RIMBP3BA6NNM3 1639 aa37.61■■■■□ 3.61
SMPD1-204ENST00000530395 RIMBP3Q9UFD9 1639 aa37.61■■■■□ 3.61
SMPD1-204ENST00000530395 TDRD9Q8NDG6 1382 aaKnown RBP37.55■■■■□ 3.6
SMPD1-204ENST00000530395 ARHGEF11O15085 1522 aa37.51■■■■□ 3.59
SMPD1-204ENST00000530395 FBLN2P98095 1184 aa37.48■■■■□ 3.59
SMPD1-204ENST00000530395 SNAPC4Q5SXM2 1469 aa37.42■■■■□ 3.58
SMPD1-204ENST00000530395 GRIN2BQ13224 1484 aa37.37■■■■□ 3.57
SMPD1-204ENST00000530395 MAGI1Q96QZ7 1491 aaPredicted RBP37.36■■■■□ 3.57
SMPD1-204ENST00000530395 PBRM1Q86U86 1689 aa37.31■■■■□ 3.56
SMPD1-204ENST00000530395 ABCA10Q8WWZ4 1543 aa37.26■■■■□ 3.56
SMPD1-204ENST00000530395 GAPVD1Q14C86 1478 aa37.26■■■■□ 3.55
SMPD1-204ENST00000530395 CHMP7Q8WUX9 453 aaPredicted RBP37.25■■■■□ 3.55
SMPD1-204ENST00000530395 SYNJ1O43426 1573 aa37.22■■■■□ 3.55
SMPD1-204ENST00000530395 SYNJ2O15056 1496 aa37.22■■■■□ 3.55
SMPD1-204ENST00000530395 ABCA5Q8WWZ7 1642 aa37.21■■■■□ 3.55
SMPD1-204ENST00000530395 BIVM-ERCC5R4GMW8 1640 aa37.18■■■■□ 3.54
SMPD1-204ENST00000530395 CLASP1Q7Z460 1538 aa37.18■■■■□ 3.54
SMPD1-204ENST00000530395 TOP2BQ02880 1626 aa37.16■■■■□ 3.54
SMPD1-204ENST00000530395 WRNQ14191 1432 aaPredicted RBP eCLIP37.16■■■■□ 3.54
SMPD1-204ENST00000530395 CYB5RLQ6IPT4 315 aa37.15■■■■□ 3.54
SMPD1-204ENST00000530395 ARAP1Q96P48 1450 aa37.13■■■■□ 3.53
SMPD1-204ENST00000530395 ADAMTS12P58397 1594 aa36.92■■■■□ 3.5
SMPD1-204ENST00000530395 GRIN2AQ12879 1464 aa36.88■■■■□ 3.5
SMPD1-204ENST00000530395 ERICH3Q5RHP9 1530 aa36.83■■■■□ 3.49
SMPD1-204ENST00000530395 FHAD1B1AJZ9 1412 aa36.79■■■■□ 3.48
SMPD1-204ENST00000530395 CEP170Q5SW79 1584 aa36.74■■■■□ 3.47
SMPD1-204ENST00000530395 NUP160Q12769 1436 aa36.73■■■■□ 3.47
SMPD1-204ENST00000530395 TRHP20396 242 aaPredicted RBP36.7■■■■□ 3.47
SMPD1-204ENST00000530395 SHROOM2Q13796 1616 aa36.59■■■■□ 3.45
SMPD1-204ENST00000530395 ERCC6L2Q5T890 1561 aa36.57■■■■□ 3.44
SMPD1-204ENST00000530395 KIF27Q86VH2 1401 aa36.42■■■■□ 3.42
SMPD1-204ENST00000530395 RUSC2Q8N2Y8 1516 aa36.4■■■■□ 3.42
SMPD1-204ENST00000530395 CUL7Q14999 1698 aa36.39■■■■□ 3.42
SMPD1-204ENST00000530395 PRG4Q92954 1404 aaPredicted RBP36.35■■■■□ 3.41
Retrieved 100 of 20,778 RNA–protein pairs in 1935.9 ms