RNA–Protein interactions for RNA: ENST00000529553.1

AMBRA1-207, Transcript of autophagy and beclin 1 regulator 1, humanhuman

TSL 3

Gene AMBRA1, Length 586 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1-207ENST00000529553 NISCHQ9Y2I1 1504 aa29.87■■■□□ 2.37
AMBRA1-207ENST00000529553 ABCC9O60706 1549 aa27.59■■■□□ 2.01
AMBRA1-207ENST00000529553 CCDC180Q9P1Z9 1646 aa26.98■■□□□ 1.91
AMBRA1-207ENST00000529553 DNAJC5BQ9UF47 199 aa26.51■■□□□ 1.83
AMBRA1-207ENST00000529553 RB1CC1Q8TDY2 1594 aa26.03■■□□□ 1.76
AMBRA1-207ENST00000529553 NACADO15069 1562 aa25.75■■□□□ 1.71
AMBRA1-207ENST00000529553 PABPN1Q86U42 306 aaKnown RBP eCLIP25.66■■□□□ 1.7
AMBRA1-207ENST00000529553 DCAF8L2P0C7V8 631 aa25.51■■□□□ 1.67
AMBRA1-207ENST00000529553 MYO15BQ96JP2 1530 aa25.27■■□□□ 1.64
AMBRA1-207ENST00000529553 BICRAQ9NZM4 1560 aa25.26■■□□□ 1.63
AMBRA1-207ENST00000529553 UNC13AQ9UPW8 1703 aa25.24■■□□□ 1.63
AMBRA1-207ENST00000529553 SHROOM4Q9ULL8 1493 aa24.99■■□□□ 1.59
AMBRA1-207ENST00000529553 CECR2Q9BXF3 1484 aa24.97■■□□□ 1.59
AMBRA1-207ENST00000529553 DNAJC5Q9H3Z4 198 aa24.88■■□□□ 1.57
AMBRA1-207ENST00000529553 CC2D2AQ9P2K1 1620 aa24.87■■□□□ 1.57
AMBRA1-207ENST00000529553 EIF4G1Q04637 1599 aaKnown RBP24.7■■□□□ 1.54
AMBRA1-207ENST00000529553 DCAF1Q9Y4B6 1507 aa24.7■■□□□ 1.54
AMBRA1-207ENST00000529553 ZCCHC6Q5VYS8 1495 aaKnown RBP24.59■■□□□ 1.53
AMBRA1-207ENST00000529553 SCRIBQ14160 1630 aa24.49■■□□□ 1.51
AMBRA1-207ENST00000529553 CUX2O14529 1486 aa24.12■■□□□ 1.45
AMBRA1-207ENST00000529553 ERCC6Q03468 1493 aa23.9■■□□□ 1.42
AMBRA1-207ENST00000529553 NCAPD3P42695 1498 aa23.84■■□□□ 1.41
AMBRA1-207ENST00000529553 ATAD2BQ9ULI0 1458 aa23.62■■□□□ 1.37
AMBRA1-207ENST00000529553 NESP48681 1621 aa23.51■■□□□ 1.35
AMBRA1-207ENST00000529553 HMGXB3Q12766 1538 aa23.51■■□□□ 1.35
AMBRA1-207ENST00000529553 SMARCA2P51531 1590 aa23.51■■□□□ 1.35
AMBRA1-207ENST00000529553 TRIM41Q8WV44 630 aa23.42■■□□□ 1.34
AMBRA1-207ENST00000529553 THOC2Q8NI27 1593 aaKnown RBP23.35■■□□□ 1.33
AMBRA1-207ENST00000529553 SMARCA4P51532 1647 aa23.35■■□□□ 1.33
AMBRA1-207ENST00000529553 BAZ1BQ9UIG0 1483 aaKnown RBP23.33■■□□□ 1.33
AMBRA1-207ENST00000529553 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
AMBRA1-207ENST00000529553 PDS5BQ9NTI5 1447 aa23.28■■□□□ 1.32
AMBRA1-207ENST00000529553 BAZ1AQ9NRL2 1556 aaPredicted RBP23.22■■□□□ 1.31
AMBRA1-207ENST00000529553 PEG3Q9GZU2 1588 aa23.21■■□□□ 1.31
AMBRA1-207ENST00000529553 KIF21AQ7Z4S6 1674 aa23.09■■□□□ 1.29
AMBRA1-207ENST00000529553 CADPSQ9ULU8 1353 aa23.09■■□□□ 1.29
AMBRA1-207ENST00000529553 MRC2Q9UBG0 1479 aa23.04■■□□□ 1.28
AMBRA1-207ENST00000529553 OSCARQ8IYS5 282 aa23.01■■□□□ 1.27
AMBRA1-207ENST00000529553 WDR62O43379 1518 aa22.98■■□□□ 1.27
AMBRA1-207ENST00000529553 MROH2BQ7Z745 1585 aa22.97■■□□□ 1.27
AMBRA1-207ENST00000529553 CEP164Q9UPV0 1460 aa22.82■■□□□ 1.24
AMBRA1-207ENST00000529553 FANCD2Q9BXW9 1451 aa22.75■■□□□ 1.23
AMBRA1-207ENST00000529553 CFTRP13569 1480 aa22.66■■□□□ 1.22
AMBRA1-207ENST00000529553 WIZO95785 1651 aa22.58■■□□□ 1.21
AMBRA1-207ENST00000529553 URB2Q14146 1524 aaKnown RBP22.57■■□□□ 1.2
AMBRA1-207ENST00000529553 RIMBP3CA6NJZ7 1639 aa22.57■■□□□ 1.2
AMBRA1-207ENST00000529553 RIMBP3BA6NNM3 1639 aa22.57■■□□□ 1.2
AMBRA1-207ENST00000529553 RIMBP3Q9UFD9 1639 aa22.57■■□□□ 1.2
AMBRA1-207ENST00000529553 ARHGEF11O15085 1522 aa22.48■■□□□ 1.19
AMBRA1-207ENST00000529553 CYB5RLQ6IPT4 315 aa22.45■■□□□ 1.18
AMBRA1-207ENST00000529553 IFT140Q96RY7 1462 aa22.43■■□□□ 1.18
AMBRA1-207ENST00000529553 ZNF608Q9ULD9 1512 aaPredicted RBP22.38■■□□□ 1.17
AMBRA1-207ENST00000529553 TRHP20396 242 aaPredicted RBP22.38■■□□□ 1.17
AMBRA1-207ENST00000529553 RSF1Q96T23 1441 aaPredicted RBP22.34■■□□□ 1.17
AMBRA1-207ENST00000529553 TOP2AP11388 1531 aaKnown RBP22.33■■□□□ 1.17
AMBRA1-207ENST00000529553 ABCC8Q09428 1581 aa22.25■■□□□ 1.15
AMBRA1-207ENST00000529553 TOPBP1Q92547 1522 aa22.23■■□□□ 1.15
AMBRA1-207ENST00000529553 ARAP1Q96P48 1450 aa22.22■■□□□ 1.15
AMBRA1-207ENST00000529553 AEBP2Q6ZN18 517 aaPredicted RBP22.2■■□□□ 1.14
AMBRA1-207ENST00000529553 PRDM2Q13029 1718 aa22.16■■□□□ 1.14
AMBRA1-207ENST00000529553 EIF4G3O43432 1585 aaKnown RBP22.16■■□□□ 1.14
AMBRA1-207ENST00000529553 FBLN2P98095 1184 aa22.15■■□□□ 1.14
AMBRA1-207ENST00000529553 AQRO60306 1485 aaKnown RBP eCLIP22.15■■□□□ 1.14
AMBRA1-207ENST00000529553 CCDC88BA6NC98 1476 aa22.13■■□□□ 1.13
AMBRA1-207ENST00000529553 DNMBPQ6XZF7 1577 aa22.08■■□□□ 1.12
AMBRA1-207ENST00000529553 CHD1O14646 1710 aa22.05■■□□□ 1.12
AMBRA1-207ENST00000529553 TARBP1Q13395 1621 aaKnown RBP22.05■■□□□ 1.12
AMBRA1-207ENST00000529553 POLA1P09884 1462 aaPredicted RBP21.97■■□□□ 1.11
AMBRA1-207ENST00000529553 CHMP7Q8WUX9 453 aaPredicted RBP21.95■■□□□ 1.1
AMBRA1-207ENST00000529553 TDRD9Q8NDG6 1382 aaKnown RBP21.94■■□□□ 1.1
AMBRA1-207ENST00000529553 SOGA1O94964 1423 aa21.92■■□□□ 1.1
AMBRA1-207ENST00000529553 CLASP1Q7Z460 1538 aa21.9■■□□□ 1.1
AMBRA1-207ENST00000529553 RAD54L2Q9Y4B4 1467 aa21.89■■□□□ 1.09
AMBRA1-207ENST00000529553 SNAPC4Q5SXM2 1469 aa21.86■■□□□ 1.09
AMBRA1-207ENST00000529553 SYNJ1O43426 1573 aa21.85■■□□□ 1.09
AMBRA1-207ENST00000529553 WDR97A6NE52 1622 aa21.84■■□□□ 1.09
AMBRA1-207ENST00000529553 MAGI1Q96QZ7 1491 aaPredicted RBP21.83■■□□□ 1.09
AMBRA1-207ENST00000529553 GRIN2BQ13224 1484 aa21.78■■□□□ 1.08
AMBRA1-207ENST00000529553 SYNJ2O15056 1496 aa21.77■■□□□ 1.08
AMBRA1-207ENST00000529553 GAPVD1Q14C86 1478 aa21.77■■□□□ 1.07
AMBRA1-207ENST00000529553 FGD5Q6ZNL6 1462 aa21.72■■□□□ 1.07
AMBRA1-207ENST00000529553 CUX1P39880 1505 aa21.6■■□□□ 1.05
AMBRA1-207ENST00000529553 ABCA10Q8WWZ4 1543 aa21.5■■□□□ 1.03
AMBRA1-207ENST00000529553 PBRM1Q86U86 1689 aa21.47■■□□□ 1.03
AMBRA1-207ENST00000529553 GRIN2AQ12879 1464 aa21.46■■□□□ 1.03
AMBRA1-207ENST00000529553 ERCC6L2Q5T890 1561 aa21.46■■□□□ 1.03
AMBRA1-207ENST00000529553 NUP160Q12769 1436 aa21.46■■□□□ 1.03
AMBRA1-207ENST00000529553 CEP170Q5SW79 1584 aa21.43■■□□□ 1.02
AMBRA1-207ENST00000529553 ABCA5Q8WWZ7 1642 aa21.42■■□□□ 1.02
AMBRA1-207ENST00000529553 FAM69CQ0P6D2 419 aa21.35■■□□□ 1.01
AMBRA1-207ENST00000529553 FHAD1B1AJZ9 1412 aa21.35■■□□□ 1.01
AMBRA1-207ENST00000529553 SHROOM2Q13796 1616 aa21.34■■□□□ 1.01
AMBRA1-207ENST00000529553 WRNQ14191 1432 aaPredicted RBP eCLIP21.33■■□□□ 1.01
AMBRA1-207ENST00000529553 NPM1P06748 294 aaKnown RBP eCLIP21.32■■□□□ 1
AMBRA1-207ENST00000529553 JPH4Q96JJ6 628 aa21.31■■□□□ 1
AMBRA1-207ENST00000529553 KIF13AQ9H1H9 1805 aa21.31■■□□□ 1
AMBRA1-207ENST00000529553 ABCC10Q5T3U5 1492 aa21.3■■□□□ 1
AMBRA1-207ENST00000529553 ADAMTS12P58397 1594 aa21.3■■□□□ 1
AMBRA1-207ENST00000529553 PRG4Q92954 1404 aaPredicted RBP21.29■■□□□ 1
AMBRA1-207ENST00000529553 KDM4FA0A1W2PPD8 638 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms