RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 NISCHQ9Y2I1 1504 aa23.39■■□□□ 1.34
CHD7-208ENST00000528280 ABCC9O60706 1549 aa21.19■□□□□ 0.98
CHD7-208ENST00000528280 CCDC180Q9P1Z9 1646 aa20.86■□□□□ 0.93
CHD7-208ENST00000528280 DNAJC5BQ9UF47 199 aa20.56■□□□□ 0.88
CHD7-208ENST00000528280 RB1CC1Q8TDY2 1594 aa19.9■□□□□ 0.78
CHD7-208ENST00000528280 DCAF8L2P0C7V8 631 aa19.75■□□□□ 0.75
CHD7-208ENST00000528280 NACADO15069 1562 aa19.73■□□□□ 0.75
CHD7-208ENST00000528280 PABPN1Q86U42 306 aaKnown RBP eCLIP19.6■□□□□ 0.73
CHD7-208ENST00000528280 UNC13AQ9UPW8 1703 aa19.56■□□□□ 0.72
CHD7-208ENST00000528280 MYO15BQ96JP2 1530 aa19.56■□□□□ 0.72
CHD7-208ENST00000528280 DNAJC5Q9H3Z4 198 aa19.41■□□□□ 0.7
CHD7-208ENST00000528280 ZCCHC6Q5VYS8 1495 aaKnown RBP19.4■□□□□ 0.7
CHD7-208ENST00000528280 BICRAQ9NZM4 1560 aa19.38■□□□□ 0.69
CHD7-208ENST00000528280 DCAF1Q9Y4B6 1507 aa19.38■□□□□ 0.69
CHD7-208ENST00000528280 CECR2Q9BXF3 1484 aa19.17■□□□□ 0.66
CHD7-208ENST00000528280 CC2D2AQ9P2K1 1620 aa19.16■□□□□ 0.66
CHD7-208ENST00000528280 SHROOM4Q9ULL8 1493 aa19.01■□□□□ 0.63
CHD7-208ENST00000528280 SCRIBQ14160 1630 aa18.96■□□□□ 0.63
CHD7-208ENST00000528280 EIF4G1Q04637 1599 aaKnown RBP18.93■□□□□ 0.62
CHD7-208ENST00000528280 CUX2O14529 1486 aa18.58■□□□□ 0.57
CHD7-208ENST00000528280 ERCC6Q03468 1493 aa18.33■□□□□ 0.52
CHD7-208ENST00000528280 NCAPD3P42695 1498 aa18.22■□□□□ 0.51
CHD7-208ENST00000528280 TRIM41Q8WV44 630 aa18.18■□□□□ 0.5
CHD7-208ENST00000528280 BAZ1AQ9NRL2 1556 aaPredicted RBP18.17■□□□□ 0.5
CHD7-208ENST00000528280 ATAD2BQ9ULI0 1458 aa18.15■□□□□ 0.5
CHD7-208ENST00000528280 SMARCA2P51531 1590 aa18.15■□□□□ 0.5
CHD7-208ENST00000528280 SMARCA4P51532 1647 aa18.14■□□□□ 0.49
CHD7-208ENST00000528280 HMGXB3Q12766 1538 aa18.05■□□□□ 0.48
CHD7-208ENST00000528280 NESP48681 1621 aa18.01■□□□□ 0.47
CHD7-208ENST00000528280 THOC2Q8NI27 1593 aaKnown RBP18■□□□□ 0.47
CHD7-208ENST00000528280 PEG3Q9GZU2 1588 aa18■□□□□ 0.47
CHD7-208ENST00000528280 BAZ1BQ9UIG0 1483 aaKnown RBP18■□□□□ 0.47
CHD7-208ENST00000528280 MROH2BQ7Z745 1585 aa17.98■□□□□ 0.47
CHD7-208ENST00000528280 KIF21AQ7Z4S6 1674 aa17.83■□□□□ 0.45
CHD7-208ENST00000528280 LAMC3Q9Y6N6 1575 aa17.81■□□□□ 0.44
CHD7-208ENST00000528280 RSF1Q96T23 1441 aaPredicted RBP17.75■□□□□ 0.43
CHD7-208ENST00000528280 WIZO95785 1651 aa17.75■□□□□ 0.43
CHD7-208ENST00000528280 PDS5BQ9NTI5 1447 aa17.71■□□□□ 0.43
CHD7-208ENST00000528280 CADPSQ9ULU8 1353 aa17.69■□□□□ 0.42
CHD7-208ENST00000528280 OSCARQ8IYS5 282 aa17.61■□□□□ 0.41
CHD7-208ENST00000528280 TOP2AP11388 1531 aaKnown RBP17.59■□□□□ 0.41
CHD7-208ENST00000528280 WDR62O43379 1518 aa17.58■□□□□ 0.41
CHD7-208ENST00000528280 MRC2Q9UBG0 1479 aa17.58■□□□□ 0.41
CHD7-208ENST00000528280 CFTRP13569 1480 aa17.5■□□□□ 0.39
CHD7-208ENST00000528280 RIMBP3CA6NJZ7 1639 aa17.5■□□□□ 0.39
CHD7-208ENST00000528280 RIMBP3BA6NNM3 1639 aa17.5■□□□□ 0.39
CHD7-208ENST00000528280 RIMBP3Q9UFD9 1639 aa17.5■□□□□ 0.39
CHD7-208ENST00000528280 FANCD2Q9BXW9 1451 aa17.44■□□□□ 0.38
CHD7-208ENST00000528280 CEP164Q9UPV0 1460 aa17.44■□□□□ 0.38
CHD7-208ENST00000528280 CCDC88BA6NC98 1476 aa17.42■□□□□ 0.38
CHD7-208ENST00000528280 ARHGEF11O15085 1522 aa17.32■□□□□ 0.36
CHD7-208ENST00000528280 AEBP2Q6ZN18 517 aaPredicted RBP17.28■□□□□ 0.36
CHD7-208ENST00000528280 PRDM2Q13029 1718 aa17.25■□□□□ 0.35
CHD7-208ENST00000528280 TRHP20396 242 aaPredicted RBP17.24■□□□□ 0.35
CHD7-208ENST00000528280 ABCC8Q09428 1581 aa17.23■□□□□ 0.35
CHD7-208ENST00000528280 CYB5RLQ6IPT4 315 aa17.23■□□□□ 0.35
CHD7-208ENST00000528280 URB2Q14146 1524 aaKnown RBP17.22■□□□□ 0.35
CHD7-208ENST00000528280 SUPT5HO00267 1087 aaKnown RBP17.21■□□□□ 0.35
CHD7-208ENST00000528280 TOPBP1Q92547 1522 aa17.11■□□□□ 0.33
CHD7-208ENST00000528280 IFT140Q96RY7 1462 aa17.11■□□□□ 0.33
CHD7-208ENST00000528280 ARAP1Q96P48 1450 aa17.1■□□□□ 0.33
CHD7-208ENST00000528280 ZNF608Q9ULD9 1512 aaPredicted RBP17.09■□□□□ 0.33
CHD7-208ENST00000528280 DNMBPQ6XZF7 1577 aa17.07■□□□□ 0.32
CHD7-208ENST00000528280 CHD1O14646 1710 aa17.05■□□□□ 0.32
CHD7-208ENST00000528280 EIF4G3O43432 1585 aaKnown RBP16.98■□□□□ 0.31
CHD7-208ENST00000528280 SOGA1O94964 1423 aa16.96■□□□□ 0.31
CHD7-208ENST00000528280 POLA1P09884 1462 aaPredicted RBP16.94■□□□□ 0.3
CHD7-208ENST00000528280 TARBP1Q13395 1621 aaKnown RBP16.91■□□□□ 0.3
CHD7-208ENST00000528280 AQRO60306 1485 aaKnown RBP eCLIP16.89■□□□□ 0.29
CHD7-208ENST00000528280 FGD5Q6ZNL6 1462 aa16.87■□□□□ 0.29
CHD7-208ENST00000528280 RAD54L2Q9Y4B4 1467 aa16.87■□□□□ 0.29
CHD7-208ENST00000528280 CUX1P39880 1505 aa16.87■□□□□ 0.29
CHD7-208ENST00000528280 TDRD9Q8NDG6 1382 aaKnown RBP16.86■□□□□ 0.29
CHD7-208ENST00000528280 WDR97A6NE52 1622 aa16.85■□□□□ 0.29
CHD7-208ENST00000528280 FBLN2P98095 1184 aa16.84■□□□□ 0.29
CHD7-208ENST00000528280 CLASP1Q7Z460 1538 aa16.79■□□□□ 0.28
CHD7-208ENST00000528280 CHMP7Q8WUX9 453 aaPredicted RBP16.78■□□□□ 0.28
CHD7-208ENST00000528280 WRNQ14191 1432 aaPredicted RBP eCLIP16.78■□□□□ 0.28
CHD7-208ENST00000528280 GRIN2BQ13224 1484 aa16.76■□□□□ 0.27
CHD7-208ENST00000528280 MAGI1Q96QZ7 1491 aaPredicted RBP16.73■□□□□ 0.27
CHD7-208ENST00000528280 ABCA10Q8WWZ4 1543 aa16.73■□□□□ 0.27
CHD7-208ENST00000528280 GAPVD1Q14C86 1478 aa16.73■□□□□ 0.27
CHD7-208ENST00000528280 TOP2BQ02880 1626 aa16.7■□□□□ 0.26
CHD7-208ENST00000528280 SNAPC4Q5SXM2 1469 aa16.7■□□□□ 0.26
CHD7-208ENST00000528280 SYNJ1O43426 1573 aa16.69■□□□□ 0.26
CHD7-208ENST00000528280 BIVM-ERCC5R4GMW8 1640 aa16.67■□□□□ 0.26
CHD7-208ENST00000528280 SYNJ2O15056 1496 aa16.67■□□□□ 0.26
CHD7-208ENST00000528280 ILDR1Q86SU0 546 aaPredicted RBP16.66■□□□□ 0.26
CHD7-208ENST00000528280 ABCA5Q8WWZ7 1642 aa16.61■□□□□ 0.25
CHD7-208ENST00000528280 PBRM1Q86U86 1689 aa16.59■□□□□ 0.25
CHD7-208ENST00000528280 KIF13AQ9H1H9 1805 aa16.58■□□□□ 0.24
CHD7-208ENST00000528280 FHAD1B1AJZ9 1412 aa16.55■□□□□ 0.24
CHD7-208ENST00000528280 ERICH3Q5RHP9 1530 aa16.55■□□□□ 0.24
CHD7-208ENST00000528280 GRIN2AQ12879 1464 aa16.5■□□□□ 0.23
CHD7-208ENST00000528280 KIF27Q86VH2 1401 aa16.47■□□□□ 0.23
CHD7-208ENST00000528280 ERCC6L2Q5T890 1561 aa16.47■□□□□ 0.23
CHD7-208ENST00000528280 ADAMTS12P58397 1594 aa16.46■□□□□ 0.23
CHD7-208ENST00000528280 NUP160Q12769 1436 aa16.45■□□□□ 0.22
CHD7-208ENST00000528280 KDM4FA0A1W2PPD8 638 aa16.44■□□□□ 0.22
CHD7-208ENST00000528280 IGF1RP08069 1367 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms