RNA–Protein interactions for RNA: ENST00000528036.5

PKP3-206, Transcript of plakophilin 3, humanhuman

TSL 2

Gene PKP3, Length 940 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP3-206ENST00000528036 NISCHQ9Y2I1 1504 aa57.02■■■■■ 6.72
PKP3-206ENST00000528036 CCDC180Q9P1Z9 1646 aa50.95■■■■■ 5.75
PKP3-206ENST00000528036 ABCC9O60706 1549 aa50.41■■■■■ 5.66
PKP3-206ENST00000528036 RB1CC1Q8TDY2 1594 aa48.32■■■■■ 5.33
PKP3-206ENST00000528036 NACADO15069 1562 aa48.15■■■■■ 5.3
PKP3-206ENST00000528036 DCAF8L2P0C7V8 631 aa47.92■■■■■ 5.26
PKP3-206ENST00000528036 MYO15BQ96JP2 1530 aa47.74■■■■■ 5.23
PKP3-206ENST00000528036 ZCCHC6Q5VYS8 1495 aaKnown RBP47.34■■■■■ 5.17
PKP3-206ENST00000528036 DCAF1Q9Y4B6 1507 aa47.25■■■■■ 5.16
PKP3-206ENST00000528036 PABPN1Q86U42 306 aaKnown RBP eCLIP47.01■■■■■ 5.12
PKP3-206ENST00000528036 UNC13AQ9UPW8 1703 aa46.92■■■■■ 5.1
PKP3-206ENST00000528036 DNAJC5BQ9UF47 199 aa46.82■■■■■ 5.09
PKP3-206ENST00000528036 BICRAQ9NZM4 1560 aa46.73■■■■■ 5.07
PKP3-206ENST00000528036 SHROOM4Q9ULL8 1493 aa46.49■■■■■ 5.03
PKP3-206ENST00000528036 SCRIBQ14160 1630 aa46.32■■■■■ 5
PKP3-206ENST00000528036 EIF4G1Q04637 1599 aaKnown RBP45.62■■■■■ 4.89
PKP3-206ENST00000528036 CC2D2AQ9P2K1 1620 aa45.55■■■■■ 4.88
PKP3-206ENST00000528036 CECR2Q9BXF3 1484 aa45.45■■■■■ 4.87
PKP3-206ENST00000528036 NCAPD3P42695 1498 aa44.46■■■■■ 4.71
PKP3-206ENST00000528036 ATAD2BQ9ULI0 1458 aa44.31■■■■■ 4.68
PKP3-206ENST00000528036 SMARCA4P51532 1647 aa44.31■■■■■ 4.68
PKP3-206ENST00000528036 SMARCA2P51531 1590 aa44.28■■■■■ 4.68
PKP3-206ENST00000528036 BAZ1AQ9NRL2 1556 aaPredicted RBP44.28■■■■■ 4.68
PKP3-206ENST00000528036 HMGXB3Q12766 1538 aa44.13■■■■■ 4.65
PKP3-206ENST00000528036 PEG3Q9GZU2 1588 aa43.97■■■■■ 4.63
PKP3-206ENST00000528036 BAZ1BQ9UIG0 1483 aaKnown RBP43.92■■■■■ 4.62
PKP3-206ENST00000528036 MROH2BQ7Z745 1585 aa43.84■■■■■ 4.61
PKP3-206ENST00000528036 ERCC6Q03468 1493 aa43.61■■■■■ 4.57
PKP3-206ENST00000528036 CUX2O14529 1486 aa43.44■■■■■ 4.54
PKP3-206ENST00000528036 NESP48681 1621 aa43.37■■■■■ 4.53
PKP3-206ENST00000528036 LAMC3Q9Y6N6 1575 aa43.33■■■■■ 4.53
PKP3-206ENST00000528036 WIZO95785 1651 aa43.27■■■■■ 4.52
PKP3-206ENST00000528036 RSF1Q96T23 1441 aaPredicted RBP43.2■■■■■ 4.51
PKP3-206ENST00000528036 PDS5BQ9NTI5 1447 aa43.17■■■■■ 4.5
PKP3-206ENST00000528036 CADPSQ9ULU8 1353 aa43.14■■■■■ 4.5
PKP3-206ENST00000528036 TOP2AP11388 1531 aaKnown RBP42.91■■■■■ 4.46
PKP3-206ENST00000528036 THOC2Q8NI27 1593 aaKnown RBP42.87■■■■■ 4.45
PKP3-206ENST00000528036 DNAJC5Q9H3Z4 198 aa42.86■■■■■ 4.45
PKP3-206ENST00000528036 KIF21AQ7Z4S6 1674 aa42.78■■■■■ 4.44
PKP3-206ENST00000528036 CFTRP13569 1480 aa42.7■■■■■ 4.43
PKP3-206ENST00000528036 MRC2Q9UBG0 1479 aa42.66■■■■■ 4.42
PKP3-206ENST00000528036 CEP164Q9UPV0 1460 aa42.59■■■■■ 4.41
PKP3-206ENST00000528036 FANCD2Q9BXW9 1451 aa42.56■■■■■ 4.4
PKP3-206ENST00000528036 WDR62O43379 1518 aa42.5■■■■■ 4.39
PKP3-206ENST00000528036 CCDC88BA6NC98 1476 aa42.4■■■■■ 4.38
PKP3-206ENST00000528036 PRDM2Q13029 1718 aa42.15■■■■■ 4.34
PKP3-206ENST00000528036 URB2Q14146 1524 aaKnown RBP42.1■■■■■ 4.33
PKP3-206ENST00000528036 ABCC8Q09428 1581 aa41.93■■■■■ 4.3
PKP3-206ENST00000528036 TOPBP1Q92547 1522 aa41.79■■■■■ 4.28
PKP3-206ENST00000528036 IFT140Q96RY7 1462 aa41.77■■■■■ 4.28
PKP3-206ENST00000528036 DNMBPQ6XZF7 1577 aa41.69■■■■■ 4.26
PKP3-206ENST00000528036 SUPT5HO00267 1087 aaKnown RBP41.61■■■■■ 4.25
PKP3-206ENST00000528036 OSCARQ8IYS5 282 aa41.58■■■■■ 4.25
PKP3-206ENST00000528036 ZNF608Q9ULD9 1512 aaPredicted RBP41.48■■■■■ 4.23
PKP3-206ENST00000528036 POLA1P09884 1462 aaPredicted RBP41.38■■■■■ 4.21
PKP3-206ENST00000528036 TARBP1Q13395 1621 aaKnown RBP41.31■■■■■ 4.2
PKP3-206ENST00000528036 SOGA1O94964 1423 aa41.28■■■■■ 4.2
PKP3-206ENST00000528036 EIF4G3O43432 1585 aaKnown RBP41.27■■■■■ 4.2
PKP3-206ENST00000528036 AQRO60306 1485 aaKnown RBP eCLIP41.21■■■■■ 4.192e-6■■■■■ 27.4
PKP3-206ENST00000528036 FGD5Q6ZNL6 1462 aa41.18■■■■■ 4.18
PKP3-206ENST00000528036 CUX1P39880 1505 aa41.18■■■■■ 4.18
PKP3-206ENST00000528036 RAD54L2Q9Y4B4 1467 aa41.15■■■■■ 4.18
PKP3-206ENST00000528036 WDR97A6NE52 1622 aa41.13■■■■■ 4.17
PKP3-206ENST00000528036 TDRD9Q8NDG6 1382 aaKnown RBP41.06■■■■■ 4.16
PKP3-206ENST00000528036 TRIM41Q8WV44 630 aa41.05■■■■■ 4.16
PKP3-206ENST00000528036 FBLN2P98095 1184 aa40.92■■■■■ 4.14
PKP3-206ENST00000528036 GRIN2BQ13224 1484 aa40.89■■■■■ 4.14
PKP3-206ENST00000528036 MAGI1Q96QZ7 1491 aaPredicted RBP40.85■■■■■ 4.13
PKP3-206ENST00000528036 SNAPC4Q5SXM2 1469 aa40.82■■■■■ 4.12
PKP3-206ENST00000528036 ABCA10Q8WWZ4 1543 aa40.82■■■■■ 4.12
PKP3-206ENST00000528036 WRNQ14191 1432 aaPredicted RBP eCLIP40.81■■■■■ 4.12
PKP3-206ENST00000528036 CHD1O14646 1710 aa40.8■■■■■ 4.12
PKP3-206ENST00000528036 CHMP7Q8WUX9 453 aaPredicted RBP40.79■■■■■ 4.12
PKP3-206ENST00000528036 GAPVD1Q14C86 1478 aa40.77■■■■■ 4.12
PKP3-206ENST00000528036 RIMBP3CA6NJZ7 1639 aa40.74■■■■■ 4.11
PKP3-206ENST00000528036 RIMBP3BA6NNM3 1639 aa40.74■■■■■ 4.11
PKP3-206ENST00000528036 RIMBP3Q9UFD9 1639 aa40.74■■■■■ 4.11
PKP3-206ENST00000528036 ARHGEF11O15085 1522 aa40.73■■■■■ 4.11
PKP3-206ENST00000528036 TOP2BQ02880 1626 aa40.7■■■■■ 4.11
PKP3-206ENST00000528036 SYNJ2O15056 1496 aa40.68■■■■■ 4.1
PKP3-206ENST00000528036 BIVM-ERCC5R4GMW8 1640 aa40.65■■■■■ 4.1
PKP3-206ENST00000528036 ABCA5Q8WWZ7 1642 aa40.6■■■■■ 4.09
PKP3-206ENST00000528036 SYNJ1O43426 1573 aa40.58■■■■■ 4.09
PKP3-206ENST00000528036 PBRM1Q86U86 1689 aa40.54■■■■■ 4.08
PKP3-206ENST00000528036 CLASP1Q7Z460 1538 aa40.47■■■■■ 4.07
PKP3-206ENST00000528036 CYB5RLQ6IPT4 315 aa40.46■■■■■ 4.07
PKP3-206ENST00000528036 ARAP1Q96P48 1450 aa40.34■■■■■ 4.05
PKP3-206ENST00000528036 ERICH3Q5RHP9 1530 aa40.34■■■■■ 4.05
PKP3-206ENST00000528036 FHAD1B1AJZ9 1412 aa40.33■■■■■ 4.05
PKP3-206ENST00000528036 GRIN2AQ12879 1464 aa40.3■■■■■ 4.04
PKP3-206ENST00000528036 ADAMTS12P58397 1594 aa40.27■■■■■ 4.04
PKP3-206ENST00000528036 NUP160Q12769 1436 aa40.17■■■■■ 4.02
PKP3-206ENST00000528036 KIF27Q86VH2 1401 aa40.05■■■■■ 4
PKP3-206ENST00000528036 CEP170Q5SW79 1584 aa40.02■■■■■ 4
PKP3-206ENST00000528036 IGF1RP08069 1367 aa39.92■■■■□ 3.98
PKP3-206ENST00000528036 TRHP20396 242 aaPredicted RBP39.88■■■■□ 3.97
PKP3-206ENST00000528036 SHROOM2Q13796 1616 aa39.86■■■■□ 3.97
PKP3-206ENST00000528036 JPH4Q96JJ6 628 aa39.83■■■■□ 3.97
PKP3-206ENST00000528036 CUL7Q14999 1698 aa39.79■■■■□ 3.96
PKP3-206ENST00000528036 PRG4Q92954 1404 aaPredicted RBP39.74■■■■□ 3.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms