RNA–Protein interactions for RNA: ENST00000525207.1

SF3B2-204, Transcript of splicing factor 3b subunit 2, humanhuman

TSL 2

Gene SF3B2, Length 493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-204ENST00000525207 NISCHQ9Y2I1 1504 aa23.64■■□□□ 1.38
SF3B2-204ENST00000525207 CCDC180Q9P1Z9 1646 aa21.25■□□□□ 0.99
SF3B2-204ENST00000525207 ABCC9O60706 1549 aa20.92■□□□□ 0.94
SF3B2-204ENST00000525207 RB1CC1Q8TDY2 1594 aa20.06■□□□□ 0.8
SF3B2-204ENST00000525207 NACADO15069 1562 aa19.97■□□□□ 0.79
SF3B2-204ENST00000525207 MYO15BQ96JP2 1530 aa19.78■□□□□ 0.76
SF3B2-204ENST00000525207 ZCCHC6Q5VYS8 1495 aaKnown RBP19.69■□□□□ 0.74
SF3B2-204ENST00000525207 UNC13AQ9UPW8 1703 aa19.68■□□□□ 0.74
SF3B2-204ENST00000525207 DCAF8L2P0C7V8 631 aa19.65■□□□□ 0.74
SF3B2-204ENST00000525207 DCAF1Q9Y4B6 1507 aa19.59■□□□□ 0.73
SF3B2-204ENST00000525207 BICRAQ9NZM4 1560 aa19.49■□□□□ 0.71
SF3B2-204ENST00000525207 AEBP2Q6ZN18 517 aaPredicted RBP19.42■□□□□ 0.7
SF3B2-204ENST00000525207 PABPN1Q86U42 306 aaKnown RBP eCLIP19.4■□□□□ 0.7
SF3B2-204ENST00000525207 DNAJC5BQ9UF47 199 aa19.36■□□□□ 0.69
SF3B2-204ENST00000525207 SCRIBQ14160 1630 aa19.3■□□□□ 0.68
SF3B2-204ENST00000525207 SHROOM4Q9ULL8 1493 aa19.28■□□□□ 0.68
SF3B2-204ENST00000525207 EIF4G1Q04637 1599 aaKnown RBP18.98■□□□□ 0.63
SF3B2-204ENST00000525207 CC2D2AQ9P2K1 1620 aa18.96■□□□□ 0.63
SF3B2-204ENST00000525207 CHIC1Q5VXU3 224 aa18.93■□□□□ 0.62
SF3B2-204ENST00000525207 CECR2Q9BXF3 1484 aa18.84■□□□□ 0.61
SF3B2-204ENST00000525207 SMARCA4P51532 1647 aa18.45■□□□□ 0.54
SF3B2-204ENST00000525207 NCAPD3P42695 1498 aa18.39■□□□□ 0.53
SF3B2-204ENST00000525207 SMARCA2P51531 1590 aa18.37■□□□□ 0.53
SF3B2-204ENST00000525207 BAZ1AQ9NRL2 1556 aaPredicted RBP18.37■□□□□ 0.53
SF3B2-204ENST00000525207 ATAD2BQ9ULI0 1458 aa18.36■□□□□ 0.53
SF3B2-204ENST00000525207 HMGXB3Q12766 1538 aa18.35■□□□□ 0.53
SF3B2-204ENST00000525207 PEG3Q9GZU2 1588 aa18.3■□□□□ 0.52
SF3B2-204ENST00000525207 MROH2BQ7Z745 1585 aa18.21■□□□□ 0.51
SF3B2-204ENST00000525207 BAZ1BQ9UIG0 1483 aaKnown RBP18.2■□□□□ 0.5
SF3B2-204ENST00000525207 ERCC6Q03468 1493 aa18.06■□□□□ 0.48
SF3B2-204ENST00000525207 NESP48681 1621 aa18.04■□□□□ 0.48
SF3B2-204ENST00000525207 WIZO95785 1651 aa18.03■□□□□ 0.48
SF3B2-204ENST00000525207 CUX2O14529 1486 aa18.01■□□□□ 0.47
SF3B2-204ENST00000525207 LAMC3Q9Y6N6 1575 aa18■□□□□ 0.47
SF3B2-204ENST00000525207 THOC2Q8NI27 1593 aaKnown RBP17.92■□□□□ 0.46
SF3B2-204ENST00000525207 KIF21AQ7Z4S6 1674 aa17.9■□□□□ 0.46
SF3B2-204ENST00000525207 RSF1Q96T23 1441 aaPredicted RBP17.88■□□□□ 0.45
SF3B2-204ENST00000525207 TOP2AP11388 1531 aaKnown RBP17.84■□□□□ 0.45
SF3B2-204ENST00000525207 PDS5BQ9NTI5 1447 aa17.81■□□□□ 0.44
SF3B2-204ENST00000525207 CADPSQ9ULU8 1353 aa17.79■□□□□ 0.44
SF3B2-204ENST00000525207 MRC2Q9UBG0 1479 aa17.7■□□□□ 0.42
SF3B2-204ENST00000525207 WDR62O43379 1518 aa17.69■□□□□ 0.42
SF3B2-204ENST00000525207 CFTRP13569 1480 aa17.69■□□□□ 0.42
SF3B2-204ENST00000525207 CEP164Q9UPV0 1460 aa17.67■□□□□ 0.42
SF3B2-204ENST00000525207 PRDM2Q13029 1718 aa17.67■□□□□ 0.42
SF3B2-204ENST00000525207 FANCD2Q9BXW9 1451 aa17.64■□□□□ 0.41
SF3B2-204ENST00000525207 DNAJC5Q9H3Z4 198 aa17.64■□□□□ 0.41
SF3B2-204ENST00000525207 CCDC88BA6NC98 1476 aa17.55■□□□□ 0.4
SF3B2-204ENST00000525207 URB2Q14146 1524 aaKnown RBP17.5■□□□□ 0.39
SF3B2-204ENST00000525207 TOPBP1Q92547 1522 aa17.35■□□□□ 0.37
SF3B2-204ENST00000525207 DNMBPQ6XZF7 1577 aa17.33■□□□□ 0.37
SF3B2-204ENST00000525207 ABCC8Q09428 1581 aa17.29■□□□□ 0.36
SF3B2-204ENST00000525207 IFT140Q96RY7 1462 aa17.29■□□□□ 0.36
SF3B2-204ENST00000525207 EIF4G3O43432 1585 aaKnown RBP17.23■□□□□ 0.35
SF3B2-204ENST00000525207 ZNF608Q9ULD9 1512 aaPredicted RBP17.23■□□□□ 0.35
SF3B2-204ENST00000525207 TARBP1Q13395 1621 aaKnown RBP17.21■□□□□ 0.35
SF3B2-204ENST00000525207 POLA1P09884 1462 aaPredicted RBP17.18■□□□□ 0.34
SF3B2-204ENST00000525207 CUX1P39880 1505 aa17.12■□□□□ 0.33
SF3B2-204ENST00000525207 FGD5Q6ZNL6 1462 aa17.1■□□□□ 0.33
SF3B2-204ENST00000525207 SUPT5HO00267 1087 aaKnown RBP17.09■□□□□ 0.33
SF3B2-204ENST00000525207 WDR97A6NE52 1622 aa17.09■□□□□ 0.33
SF3B2-204ENST00000525207 CHD1O14646 1710 aa17.07■□□□□ 0.32
SF3B2-204ENST00000525207 RAD54L2Q9Y4B4 1467 aa17.06■□□□□ 0.32
SF3B2-204ENST00000525207 OSCARQ8IYS5 282 aa17.06■□□□□ 0.32
SF3B2-204ENST00000525207 AQRO60306 1485 aaKnown RBP eCLIP17.05■□□□□ 0.321e-10■■■■□ 25.6
SF3B2-204ENST00000525207 SOGA1O94964 1423 aa17.03■□□□□ 0.32
SF3B2-204ENST00000525207 RIMBP3CA6NJZ7 1639 aa16.98■□□□□ 0.31
SF3B2-204ENST00000525207 RIMBP3BA6NNM3 1639 aa16.98■□□□□ 0.31
SF3B2-204ENST00000525207 RIMBP3Q9UFD9 1639 aa16.98■□□□□ 0.31
SF3B2-204ENST00000525207 TDRD9Q8NDG6 1382 aaKnown RBP16.96■□□□□ 0.31
SF3B2-204ENST00000525207 PBRM1Q86U86 1689 aa16.96■□□□□ 0.31
SF3B2-204ENST00000525207 BIVM-ERCC5R4GMW8 1640 aa16.96■□□□□ 0.3
SF3B2-204ENST00000525207 SNAPC4Q5SXM2 1469 aa16.95■□□□□ 0.3
SF3B2-204ENST00000525207 ABCA5Q8WWZ7 1642 aa16.94■□□□□ 0.3
SF3B2-204ENST00000525207 ARHGEF11O15085 1522 aa16.94■□□□□ 0.3
SF3B2-204ENST00000525207 MAGI1Q96QZ7 1491 aaPredicted RBP16.93■□□□□ 0.3
SF3B2-204ENST00000525207 ABCA10Q8WWZ4 1543 aa16.92■□□□□ 0.3
SF3B2-204ENST00000525207 TRIM41Q8WV44 630 aa16.92■□□□□ 0.3
SF3B2-204ENST00000525207 GRIN2BQ13224 1484 aa16.92■□□□□ 0.3
SF3B2-204ENST00000525207 TOP2BQ02880 1626 aa16.92■□□□□ 0.3
SF3B2-204ENST00000525207 SYNJ1O43426 1573 aa16.9■□□□□ 0.3
SF3B2-204ENST00000525207 WRNQ14191 1432 aaPredicted RBP eCLIP16.87■□□□□ 0.29
SF3B2-204ENST00000525207 GAPVD1Q14C86 1478 aa16.87■□□□□ 0.29
SF3B2-204ENST00000525207 CLASP1Q7Z460 1538 aa16.86■□□□□ 0.29
SF3B2-204ENST00000525207 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
SF3B2-204ENST00000525207 FBLN2P98095 1184 aa16.81■□□□□ 0.28
SF3B2-204ENST00000525207 ADAMTS12P58397 1594 aa16.8■□□□□ 0.28
SF3B2-204ENST00000525207 ARAP1Q96P48 1450 aa16.79■□□□□ 0.28
SF3B2-204ENST00000525207 CHMP7Q8WUX9 453 aaPredicted RBP16.74■□□□□ 0.27
SF3B2-204ENST00000525207 GRIN2AQ12879 1464 aa16.73■□□□□ 0.27
SF3B2-204ENST00000525207 ERICH3Q5RHP9 1530 aa16.72■□□□□ 0.27
SF3B2-204ENST00000525207 CEP170Q5SW79 1584 aa16.68■□□□□ 0.26
SF3B2-204ENST00000525207 FHAD1B1AJZ9 1412 aa16.67■□□□□ 0.26
SF3B2-204ENST00000525207 NUP160Q12769 1436 aa16.66■□□□□ 0.26
SF3B2-204ENST00000525207 PHF23Q9BUL5 403 aaPredicted RBP16.66■□□□□ 0.26
SF3B2-204ENST00000525207 CYB5RLQ6IPT4 315 aa16.64■□□□□ 0.25
SF3B2-204ENST00000525207 SHROOM2Q13796 1616 aa16.62■□□□□ 0.25
SF3B2-204ENST00000525207 ERCC6L2Q5T890 1561 aa16.57■□□□□ 0.24
SF3B2-204ENST00000525207 RUSC2Q8N2Y8 1516 aa16.57■□□□□ 0.24
SF3B2-204ENST00000525207 CUL7Q14999 1698 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms