RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 NISCHQ9Y2I1 1504 aa29.6■■■□□ 2.33
SDCBP-211ENST00000523441 ABCC9O60706 1549 aa27.34■■□□□ 1.97
SDCBP-211ENST00000523441 CCDC180Q9P1Z9 1646 aa26.75■■□□□ 1.87
SDCBP-211ENST00000523441 DNAJC5BQ9UF47 199 aa25.97■■□□□ 1.75
SDCBP-211ENST00000523441 RB1CC1Q8TDY2 1594 aa25.7■■□□□ 1.71
SDCBP-211ENST00000523441 DCAF8L2P0C7V8 631 aa25.46■■□□□ 1.67
SDCBP-211ENST00000523441 PABPN1Q86U42 306 aaKnown RBP eCLIP25.41■■□□□ 1.66
SDCBP-211ENST00000523441 NACADO15069 1562 aa25.35■■□□□ 1.65
SDCBP-211ENST00000523441 UNC13AQ9UPW8 1703 aa25.25■■□□□ 1.63
SDCBP-211ENST00000523441 BICRAQ9NZM4 1560 aa24.97■■□□□ 1.59
SDCBP-211ENST00000523441 MYO15BQ96JP2 1530 aa24.71■■□□□ 1.55
SDCBP-211ENST00000523441 CC2D2AQ9P2K1 1620 aa24.61■■□□□ 1.53
SDCBP-211ENST00000523441 CECR2Q9BXF3 1484 aa24.59■■□□□ 1.53
SDCBP-211ENST00000523441 SCRIBQ14160 1630 aa24.53■■□□□ 1.52
SDCBP-211ENST00000523441 ZCCHC6Q5VYS8 1495 aaKnown RBP24.42■■□□□ 1.5
SDCBP-211ENST00000523441 EIF4G1Q04637 1599 aaKnown RBP24.41■■□□□ 1.5
SDCBP-211ENST00000523441 SHROOM4Q9ULL8 1493 aa24.38■■□□□ 1.49
SDCBP-211ENST00000523441 DCAF1Q9Y4B6 1507 aa24.28■■□□□ 1.48
SDCBP-211ENST00000523441 DNAJC5Q9H3Z4 198 aa24.08■■□□□ 1.45
SDCBP-211ENST00000523441 ERCC6Q03468 1493 aa23.62■■□□□ 1.37
SDCBP-211ENST00000523441 CUX2O14529 1486 aa23.56■■□□□ 1.36
SDCBP-211ENST00000523441 NCAPD3P42695 1498 aa23.37■■□□□ 1.33
SDCBP-211ENST00000523441 NESP48681 1621 aa23.35■■□□□ 1.33
SDCBP-211ENST00000523441 ATAD2BQ9ULI0 1458 aa23.31■■□□□ 1.32
SDCBP-211ENST00000523441 SMARCA4P51532 1647 aa23.24■■□□□ 1.31
SDCBP-211ENST00000523441 SMARCA2P51531 1590 aa23.23■■□□□ 1.31
SDCBP-211ENST00000523441 HMGXB3Q12766 1538 aa23.19■■□□□ 1.3
SDCBP-211ENST00000523441 BAZ1BQ9UIG0 1483 aaKnown RBP23.13■■□□□ 1.29
SDCBP-211ENST00000523441 THOC2Q8NI27 1593 aaKnown RBP23.13■■□□□ 1.29
SDCBP-211ENST00000523441 TRIM41Q8WV44 630 aa23.1■■□□□ 1.29
SDCBP-211ENST00000523441 KIF21AQ7Z4S6 1674 aa23.07■■□□□ 1.28
SDCBP-211ENST00000523441 BAZ1AQ9NRL2 1556 aaPredicted RBP23.01■■□□□ 1.27
SDCBP-211ENST00000523441 LAMC3Q9Y6N6 1575 aa22.99■■□□□ 1.27
SDCBP-211ENST00000523441 MROH2BQ7Z745 1585 aa22.88■■□□□ 1.25
SDCBP-211ENST00000523441 PDS5BQ9NTI5 1447 aa22.87■■□□□ 1.25
SDCBP-211ENST00000523441 PEG3Q9GZU2 1588 aa22.87■■□□□ 1.25
SDCBP-211ENST00000523441 MRC2Q9UBG0 1479 aa22.73■■□□□ 1.23
SDCBP-211ENST00000523441 CADPSQ9ULU8 1353 aa22.7■■□□□ 1.22
SDCBP-211ENST00000523441 WDR62O43379 1518 aa22.66■■□□□ 1.22
SDCBP-211ENST00000523441 WIZO95785 1651 aa22.65■■□□□ 1.22
SDCBP-211ENST00000523441 CEP164Q9UPV0 1460 aa22.58■■□□□ 1.2
SDCBP-211ENST00000523441 FANCD2Q9BXW9 1451 aa22.51■■□□□ 1.19
SDCBP-211ENST00000523441 OSCARQ8IYS5 282 aa22.49■■□□□ 1.19
SDCBP-211ENST00000523441 URB2Q14146 1524 aaKnown RBP22.36■■□□□ 1.17
SDCBP-211ENST00000523441 CFTRP13569 1480 aa22.33■■□□□ 1.16
SDCBP-211ENST00000523441 RIMBP3CA6NJZ7 1639 aa22.31■■□□□ 1.16
SDCBP-211ENST00000523441 RIMBP3BA6NNM3 1639 aa22.31■■□□□ 1.16
SDCBP-211ENST00000523441 RIMBP3Q9UFD9 1639 aa22.31■■□□□ 1.16
SDCBP-211ENST00000523441 TOP2AP11388 1531 aaKnown RBP22.21■■□□□ 1.15
SDCBP-211ENST00000523441 PRDM2Q13029 1718 aa22.2■■□□□ 1.14
SDCBP-211ENST00000523441 RSF1Q96T23 1441 aaPredicted RBP22.19■■□□□ 1.14
SDCBP-211ENST00000523441 ZNF608Q9ULD9 1512 aaPredicted RBP22.19■■□□□ 1.14
SDCBP-211ENST00000523441 ARHGEF11O15085 1522 aa22.15■■□□□ 1.14
SDCBP-211ENST00000523441 CYB5RLQ6IPT4 315 aa22.1■■□□□ 1.13
SDCBP-211ENST00000523441 IFT140Q96RY7 1462 aa22.09■■□□□ 1.13
SDCBP-211ENST00000523441 TRHP20396 242 aaPredicted RBP22.07■■□□□ 1.12
SDCBP-211ENST00000523441 EIF4G3O43432 1585 aaKnown RBP22.05■■□□□ 1.12
SDCBP-211ENST00000523441 CHD1O14646 1710 aa22.04■■□□□ 1.12
SDCBP-211ENST00000523441 TOPBP1Q92547 1522 aa22.03■■□□□ 1.12
SDCBP-211ENST00000523441 FBLN2P98095 1184 aa22.01■■□□□ 1.11
SDCBP-211ENST00000523441 CCDC88BA6NC98 1476 aa22■■□□□ 1.11
SDCBP-211ENST00000523441 AQRO60306 1485 aaKnown RBP eCLIP21.94■■□□□ 1.1
SDCBP-211ENST00000523441 DNMBPQ6XZF7 1577 aa21.91■■□□□ 1.1
SDCBP-211ENST00000523441 ARAP1Q96P48 1450 aa21.9■■□□□ 1.1
SDCBP-211ENST00000523441 TARBP1Q13395 1621 aaKnown RBP21.87■■□□□ 1.09
SDCBP-211ENST00000523441 ABCC8Q09428 1581 aa21.86■■□□□ 1.09
SDCBP-211ENST00000523441 POLA1P09884 1462 aaPredicted RBP21.77■■□□□ 1.08
SDCBP-211ENST00000523441 RAD54L2Q9Y4B4 1467 aa21.77■■□□□ 1.08
SDCBP-211ENST00000523441 TDRD9Q8NDG6 1382 aaKnown RBP21.74■■□□□ 1.07
SDCBP-211ENST00000523441 AEBP2Q6ZN18 517 aaPredicted RBP21.74■■□□□ 1.07
SDCBP-211ENST00000523441 SNAPC4Q5SXM2 1469 aa21.7■■□□□ 1.06
SDCBP-211ENST00000523441 SOGA1O94964 1423 aa21.68■■□□□ 1.06
SDCBP-211ENST00000523441 CHMP7Q8WUX9 453 aaPredicted RBP21.66■■□□□ 1.06
SDCBP-211ENST00000523441 CLASP1Q7Z460 1538 aa21.62■■□□□ 1.05
SDCBP-211ENST00000523441 SYNJ1O43426 1573 aa21.61■■□□□ 1.05
SDCBP-211ENST00000523441 FGD5Q6ZNL6 1462 aa21.61■■□□□ 1.05
SDCBP-211ENST00000523441 PBRM1Q86U86 1689 aa21.52■■□□□ 1.04
SDCBP-211ENST00000523441 MAGI1Q96QZ7 1491 aaPredicted RBP21.52■■□□□ 1.03
SDCBP-211ENST00000523441 CUX1P39880 1505 aa21.51■■□□□ 1.03
SDCBP-211ENST00000523441 GRIN2BQ13224 1484 aa21.51■■□□□ 1.03
SDCBP-211ENST00000523441 WDR97A6NE52 1622 aa21.48■■□□□ 1.03
SDCBP-211ENST00000523441 SYNJ2O15056 1496 aa21.48■■□□□ 1.03
SDCBP-211ENST00000523441 GAPVD1Q14C86 1478 aa21.47■■□□□ 1.03
SDCBP-211ENST00000523441 ERCC6L2Q5T890 1561 aa21.38■■□□□ 1.01
SDCBP-211ENST00000523441 ABCA5Q8WWZ7 1642 aa21.31■■□□□ 1
SDCBP-211ENST00000523441 CEP170Q5SW79 1584 aa21.25■□□□□ 0.99
SDCBP-211ENST00000523441 GRIN2AQ12879 1464 aa21.25■□□□□ 0.99
SDCBP-211ENST00000523441 ABCA10Q8WWZ4 1543 aa21.24■□□□□ 0.99
SDCBP-211ENST00000523441 ADAMTS12P58397 1594 aa21.2■□□□□ 0.98
SDCBP-211ENST00000523441 KIF13AQ9H1H9 1805 aa21.2■□□□□ 0.98
SDCBP-211ENST00000523441 NUP160Q12769 1436 aa21.12■□□□□ 0.97
SDCBP-211ENST00000523441 SUPT5HO00267 1087 aaKnown RBP21.12■□□□□ 0.97
SDCBP-211ENST00000523441 SHROOM2Q13796 1616 aa21.11■□□□□ 0.97
SDCBP-211ENST00000523441 WRNQ14191 1432 aaPredicted RBP eCLIP21.11■□□□□ 0.97
SDCBP-211ENST00000523441 FHAD1B1AJZ9 1412 aa21.07■□□□□ 0.96
SDCBP-211ENST00000523441 PRG4Q92954 1404 aaPredicted RBP21.06■□□□□ 0.96
SDCBP-211ENST00000523441 BIVM-ERCC5R4GMW8 1640 aa21.04■□□□□ 0.96
SDCBP-211ENST00000523441 FAM69CQ0P6D2 419 aa21.03■□□□□ 0.96
SDCBP-211ENST00000523441 TOP2BQ02880 1626 aa21.02■□□□□ 0.96
SDCBP-211ENST00000523441 TSPOAP1O95153 1857 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 205.6 ms