RNA–Protein interactions for RNA: ENST00000523308.5

DENND3-221, Transcript of DENN domain containing 3, humanhuman

TSL 2 BASIC

Gene DENND3, Length 2,959 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND3-221ENST00000523308 NISCHQ9Y2I1 1504 aa24.32■■□□□ 1.48
DENND3-221ENST00000523308 PELP1Q8IZL8 1130 aaKnown RBP22.63■■□□□ 1.21
DENND3-221ENST00000523308 MYT1Q01538 1121 aa22.49■■□□□ 1.19
DENND3-221ENST00000523308 SLC24A1O60721 1099 aa22.02■■□□□ 1.12
DENND3-221ENST00000523308 TTBK1Q5TCY1 1321 aaPredicted RBP21.87■■□□□ 1.09
DENND3-221ENST00000523308 PRKCSHP14314 528 aaPredicted RBP21.71■■□□□ 1.07
DENND3-221ENST00000523308 SHROOM4Q9ULL8 1493 aa21.35■■□□□ 1.01
DENND3-221ENST00000523308 APLP2Q06481 763 aa21.24■□□□□ 0.99
DENND3-221ENST00000523308 ERICH6Q7L0X2 663 aa21.16■□□□□ 0.98
DENND3-221ENST00000523308 SUPT5HO00267 1087 aaKnown RBP20.95■□□□□ 0.94
DENND3-221ENST00000523308 DCAF8L2P0C7V8 631 aa20.78■□□□□ 0.92
DENND3-221ENST00000523308 DAXXQ9UER7 740 aaPredicted RBP20.77■□□□□ 0.92
DENND3-221ENST00000523308 BCL11AQ9H165 835 aa20.59■□□□□ 0.89
DENND3-221ENST00000523308 ZCCHC6Q5VYS8 1495 aaKnown RBP20.53■□□□□ 0.88
DENND3-221ENST00000523308 CCDC180Q9P1Z9 1646 aa20.4■□□□□ 0.86
DENND3-221ENST00000523308 FAM9AQ8IZU1 332 aaPredicted RBP20.31■□□□□ 0.84
DENND3-221ENST00000523308 CHIC1Q5VXU3 224 aa20.16■□□□□ 0.82
DENND3-221ENST00000523308 MYO15BQ96JP2 1530 aa20.14■□□□□ 0.81
DENND3-221ENST00000523308 EIF5BO60841 1220 aaKnown RBP20.04■□□□□ 0.8
DENND3-221ENST00000523308 SCAF1Q9H7N4 1312 aaKnown RBP20■□□□□ 0.79
DENND3-221ENST00000523308 HRCP23327 699 aa19.86■□□□□ 0.77
DENND3-221ENST00000523308 PCGF6Q9BYE7 350 aa19.81■□□□□ 0.76
DENND3-221ENST00000523308 LOC105371045A0A1W2PR82 267 aa19.8■□□□□ 0.76
DENND3-221ENST00000523308 PLEKHG5O94827 1062 aa19.68■□□□□ 0.74
DENND3-221ENST00000523308 DCAF1Q9Y4B6 1507 aa19.68■□□□□ 0.74
DENND3-221ENST00000523308 SCRIBQ14160 1630 aa19.56■□□□□ 0.72
DENND3-221ENST00000523308 PPARGC1BQ86YN6 1023 aaKnown RBP19.55■□□□□ 0.72
DENND3-221ENST00000523308 EHMT2Q96KQ7 1210 aa19.51■□□□□ 0.71
DENND3-221ENST00000523308 CENPBP07199 599 aaPredicted RBP19.49■□□□□ 0.71
DENND3-221ENST00000523308 NCBP3Q53F19 620 aaKnown RBP19.42■□□□□ 0.7
DENND3-221ENST00000523308 ABCC9O60706 1549 aa19.38■□□□□ 0.69
DENND3-221ENST00000523308 RSF1Q96T23 1441 aaPredicted RBP19.37■□□□□ 0.69
DENND3-221ENST00000523308 TRIM41Q8WV44 630 aa19.32■□□□□ 0.68
DENND3-221ENST00000523308 RB1CC1Q8TDY2 1594 aa19.24■□□□□ 0.67
DENND3-221ENST00000523308 UBE2Q2Q8WVN8 375 aa19.22■□□□□ 0.67
DENND3-221ENST00000523308 PODXL2Q9NZ53 605 aa19.21■□□□□ 0.67
DENND3-221ENST00000523308 CECR2Q9BXF3 1484 aa19.18■□□□□ 0.66
DENND3-221ENST00000523308 TRIM26Q12899 539 aaPredicted RBP19.16■□□□□ 0.66
DENND3-221ENST00000523308 PLPPR3Q6T4P5 718 aa19.07■□□□□ 0.64
DENND3-221ENST00000523308 ANP32EQ9BTT0 268 aa19.07■□□□□ 0.64
DENND3-221ENST00000523308 KLHL34Q8N239 644 aa19.05■□□□□ 0.64
DENND3-221ENST00000523308 MROH2BQ7Z745 1585 aa19.04■□□□□ 0.64
DENND3-221ENST00000523308 ANO8Q9HCE9 1232 aaPredicted RBP19.02■□□□□ 0.64
DENND3-221ENST00000523308 ARXQ96QS3 562 aa18.99■□□□□ 0.63
DENND3-221ENST00000523308 WIZO95785 1651 aa18.96■□□□□ 0.63
DENND3-221ENST00000523308 RTN4Q9NQC3 1192 aaKnown RBP18.96■□□□□ 0.63
DENND3-221ENST00000523308 NACADO15069 1562 aa18.93■□□□□ 0.62
DENND3-221ENST00000523308 RANGAP1P46060 587 aaPredicted RBP18.91■□□□□ 0.62
DENND3-221ENST00000523308 CSRNP3Q8WYN3 585 aa18.9■□□□□ 0.62
DENND3-221ENST00000523308 TIMELESSQ9UNS1 1208 aa18.86■□□□□ 0.61
DENND3-221ENST00000523308 PKNOX2Q96KN3 472 aa18.84■□□□□ 0.61
DENND3-221ENST00000523308 ACIN1Q9UKV3 1341 aaKnown RBP18.84■□□□□ 0.61
DENND3-221ENST00000523308 GTF3C3Q9Y5Q9 886 aa18.76■□□□□ 0.59
DENND3-221ENST00000523308 PABPN1Q86U42 306 aaKnown RBP eCLIP18.7■□□□□ 0.58
DENND3-221ENST00000523308 ABCC8Q09428 1581 aa18.67■□□□□ 0.58
DENND3-221ENST00000523308 AEBP2Q6ZN18 517 aaPredicted RBP18.66■□□□□ 0.58
DENND3-221ENST00000523308 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.65■□□□□ 0.58
DENND3-221ENST00000523308 BAZ1AQ9NRL2 1556 aaPredicted RBP18.64■□□□□ 0.58
DENND3-221ENST00000523308 NEUROD1Q13562 356 aa18.63■□□□□ 0.57
DENND3-221ENST00000523308 ZEB1P37275 1124 aaPredicted RBP18.61■□□□□ 0.57
DENND3-221ENST00000523308 PDIA4P13667 645 aaKnown RBP18.59■□□□□ 0.57
DENND3-221ENST00000523308 CCDC88BA6NC98 1476 aa18.58■□□□□ 0.56
DENND3-221ENST00000523308 CCER1Q8TC90 406 aaPredicted RBP18.51■□□□□ 0.55
DENND3-221ENST00000523308 SOGA1O94964 1423 aa18.51■□□□□ 0.55
DENND3-221ENST00000523308 EIF4G1Q04637 1599 aaKnown RBP18.5■□□□□ 0.55
DENND3-221ENST00000523308 SMARCA4P51532 1647 aa18.5■□□□□ 0.55
DENND3-221ENST00000523308 UNC13AQ9UPW8 1703 aa18.49■□□□□ 0.55
DENND3-221ENST00000523308 PDE4CQ08493 712 aa18.49■□□□□ 0.55
DENND3-221ENST00000523308 UBTFP17480 764 aaKnown RBP18.48■□□□□ 0.55
DENND3-221ENST00000523308 TOP2AP11388 1531 aaKnown RBP18.48■□□□□ 0.55
DENND3-221ENST00000523308 SALL2Q9Y467 1007 aaPredicted RBP18.45■□□□□ 0.54
DENND3-221ENST00000523308 SMARCA2P51531 1590 aa18.45■□□□□ 0.54
DENND3-221ENST00000523308 RUSC2Q8N2Y8 1516 aa18.45■□□□□ 0.54
DENND3-221ENST00000523308 TULP1O00294 542 aaPredicted RBP18.44■□□□□ 0.54
DENND3-221ENST00000523308 NEFLP07196 543 aa18.44■□□□□ 0.54
DENND3-221ENST00000523308 CCDC136Q96JN2 1154 aa18.41■□□□□ 0.54
DENND3-221ENST00000523308 CEP162Q5TB80 1403 aa18.37■□□□□ 0.53
DENND3-221ENST00000523308 HOMEZQ8IX15 550 aa18.33■□□□□ 0.52
DENND3-221ENST00000523308 BICRAQ9NZM4 1560 aa18.25■□□□□ 0.51
DENND3-221ENST00000523308 TNIKQ9UKE5 1360 aa18.22■□□□□ 0.51
DENND3-221ENST00000523308 WRNQ14191 1432 aaPredicted RBP eCLIP18.21■□□□□ 0.51
DENND3-221ENST00000523308 BCL11BQ9C0K0 894 aaPredicted RBP18.21■□□□□ 0.51
DENND3-221ENST00000523308 HNRNPUL2Q1KMD3 747 aaKnown RBP18.2■□□□□ 0.5
DENND3-221ENST00000523308 FGD1P98174 961 aa18.19■□□□□ 0.5
DENND3-221ENST00000523308 ERICH6BQ5W0A0 696 aa18.13■□□□□ 0.49
DENND3-221ENST00000523308 DIEXFQ68CQ4 756 aaKnown RBP18.12■□□□□ 0.49
DENND3-221ENST00000523308 SYNJ1O43426 1573 aa18.12■□□□□ 0.49
DENND3-221ENST00000523308 GOLGA3Q08378 1498 aa18.12■□□□□ 0.49
DENND3-221ENST00000523308 EEA1Q15075 1411 aa18.07■□□□□ 0.48
DENND3-221ENST00000523308 TAF7LQ5H9L4 462 aa18.07■□□□□ 0.48
DENND3-221ENST00000523308 ATAD2BQ9ULI0 1458 aa18.06■□□□□ 0.48
DENND3-221ENST00000523308 BAZ1BQ9UIG0 1483 aaKnown RBP18.06■□□□□ 0.48
DENND3-221ENST00000523308 CLIP1P30622 1438 aa18.02■□□□□ 0.48
DENND3-221ENST00000523308 AMER1Q5JTC6 1135 aaPredicted RBP18.02■□□□□ 0.47
DENND3-221ENST00000523308 A0A0U1RQG5 324 aaPredicted RBP18.01■□□□□ 0.47
DENND3-221ENST00000523308 RAPGEF2Q9Y4G8 1499 aa18■□□□□ 0.47
DENND3-221ENST00000523308 NPM2Q86SE8 214 aaKnown RBP18■□□□□ 0.47
DENND3-221ENST00000523308 CEP164Q9UPV0 1460 aa17.98■□□□□ 0.47
DENND3-221ENST00000523308 YTHDC1Q96MU7 727 aaKnown RBP17.97■□□□□ 0.47
DENND3-221ENST00000523308 CHMP4AQ9BY43 222 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms