RNA–Protein interactions for RNA: ENST00000523058.5

DENND3-219, Transcript of DENN domain containing 3, humanhuman

TSL 3

Gene DENND3, Length 906 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND3-219ENST00000523058 NISCHQ9Y2I1 1504 aa59.26■■■■■ 7.08
DENND3-219ENST00000523058 CCDC180Q9P1Z9 1646 aa53.07■■■■■ 6.09
DENND3-219ENST00000523058 ABCC9O60706 1549 aa52.46■■■■■ 5.99
DENND3-219ENST00000523058 RB1CC1Q8TDY2 1594 aa50.27■■■■■ 5.64
DENND3-219ENST00000523058 NACADO15069 1562 aa50.04■■■■■ 5.6
DENND3-219ENST00000523058 DCAF8L2P0C7V8 631 aa49.72■■■■■ 5.55
DENND3-219ENST00000523058 MYO15BQ96JP2 1530 aa49.55■■■■■ 5.52
DENND3-219ENST00000523058 ZCCHC6Q5VYS8 1495 aaKnown RBP49.22■■■■■ 5.47
DENND3-219ENST00000523058 UNC13AQ9UPW8 1703 aa49.09■■■■■ 5.45
DENND3-219ENST00000523058 DCAF1Q9Y4B6 1507 aa49.06■■■■■ 5.44
DENND3-219ENST00000523058 PABPN1Q86U42 306 aaKnown RBP eCLIP48.87■■■■■ 5.41
DENND3-219ENST00000523058 DNAJC5BQ9UF47 199 aa48.72■■■■■ 5.39
DENND3-219ENST00000523058 BICRAQ9NZM4 1560 aa48.7■■■■■ 5.39
DENND3-219ENST00000523058 SHROOM4Q9ULL8 1493 aa48.26■■■■■ 5.32
DENND3-219ENST00000523058 SCRIBQ14160 1630 aa48.25■■■■■ 5.32
DENND3-219ENST00000523058 EIF4G1Q04637 1599 aaKnown RBP47.5■■■■■ 5.19
DENND3-219ENST00000523058 CC2D2AQ9P2K1 1620 aa47.48■■■■■ 5.19
DENND3-219ENST00000523058 CECR2Q9BXF3 1484 aa47.27■■■■■ 5.16
DENND3-219ENST00000523058 NCAPD3P42695 1498 aa46.16■■■■■ 4.98
DENND3-219ENST00000523058 SMARCA4P51532 1647 aa46.14■■■■■ 4.98
DENND3-219ENST00000523058 ATAD2BQ9ULI0 1458 aa46.05■■■■■ 4.96
DENND3-219ENST00000523058 SMARCA2P51531 1590 aa46.01■■■■■ 4.96
DENND3-219ENST00000523058 BAZ1AQ9NRL2 1556 aaPredicted RBP46.01■■■■■ 4.96
DENND3-219ENST00000523058 HMGXB3Q12766 1538 aa45.89■■■■■ 4.94
DENND3-219ENST00000523058 PEG3Q9GZU2 1588 aa45.73■■■■■ 4.91
DENND3-219ENST00000523058 BAZ1BQ9UIG0 1483 aaKnown RBP45.65■■■■■ 4.9
DENND3-219ENST00000523058 MROH2BQ7Z745 1585 aa45.62■■■■■ 4.89
DENND3-219ENST00000523058 ERCC6Q03468 1493 aa45.34■■■■■ 4.85
DENND3-219ENST00000523058 NESP48681 1621 aa45.18■■■■■ 4.82
DENND3-219ENST00000523058 CUX2O14529 1486 aa45.16■■■■■ 4.82
DENND3-219ENST00000523058 WIZO95785 1651 aa45.1■■■■■ 4.81
DENND3-219ENST00000523058 LAMC3Q9Y6N6 1575 aa45.08■■■■■ 4.81
DENND3-219ENST00000523058 RSF1Q96T23 1441 aaPredicted RBP44.84■■■■■ 4.77
DENND3-219ENST00000523058 PDS5BQ9NTI5 1447 aa44.8■■■■■ 4.76
DENND3-219ENST00000523058 CADPSQ9ULU8 1353 aa44.76■■■■■ 4.76
DENND3-219ENST00000523058 THOC2Q8NI27 1593 aaKnown RBP44.72■■■■■ 4.75
DENND3-219ENST00000523058 KIF21AQ7Z4S6 1674 aa44.69■■■■■ 4.74
DENND3-219ENST00000523058 TOP2AP11388 1531 aaKnown RBP44.62■■■■■ 4.73
DENND3-219ENST00000523058 DNAJC5Q9H3Z4 198 aa44.52■■■■■ 4.72
DENND3-219ENST00000523058 CFTRP13569 1480 aa44.35■■■■■ 4.69
DENND3-219ENST00000523058 MRC2Q9UBG0 1479 aa44.34■■■■■ 4.69
DENND3-219ENST00000523058 CEP164Q9UPV0 1460 aa44.27■■■■■ 4.68
DENND3-219ENST00000523058 FANCD2Q9BXW9 1451 aa44.24■■■■■ 4.67
DENND3-219ENST00000523058 WDR62O43379 1518 aa44.24■■■■■ 4.67
DENND3-219ENST00000523058 CCDC88BA6NC98 1476 aa44.06■■■■■ 4.64
DENND3-219ENST00000523058 PRDM2Q13029 1718 aa44.04■■■■■ 4.64
DENND3-219ENST00000523058 URB2Q14146 1524 aaKnown RBP43.81■■■■■ 4.6
DENND3-219ENST00000523058 ABCC8Q09428 1581 aa43.5■■■■■ 4.55
DENND3-219ENST00000523058 TOPBP1Q92547 1522 aa43.45■■■■■ 4.55
DENND3-219ENST00000523058 IFT140Q96RY7 1462 aa43.38■■■■■ 4.54
DENND3-219ENST00000523058 DNMBPQ6XZF7 1577 aa43.37■■■■■ 4.53
DENND3-219ENST00000523058 ZNF608Q9ULD9 1512 aaPredicted RBP43.17■■■■■ 4.5
DENND3-219ENST00000523058 SUPT5HO00267 1087 aaKnown RBP43.14■■■■■ 4.5
DENND3-219ENST00000523058 OSCARQ8IYS5 282 aa43.12■■■■■ 4.49
DENND3-219ENST00000523058 TARBP1Q13395 1621 aaKnown RBP43.04■■■■■ 4.48
DENND3-219ENST00000523058 POLA1P09884 1462 aaPredicted RBP43.03■■■■■ 4.48
DENND3-219ENST00000523058 EIF4G3O43432 1585 aaKnown RBP43.03■■■■■ 4.48
DENND3-219ENST00000523058 SOGA1O94964 1423 aa42.85■■■■■ 4.45
DENND3-219ENST00000523058 AQRO60306 1485 aaKnown RBP eCLIP42.85■■■■■ 4.45
DENND3-219ENST00000523058 CUX1P39880 1505 aa42.84■■■■■ 4.45
DENND3-219ENST00000523058 FGD5Q6ZNL6 1462 aa42.82■■■■■ 4.45
DENND3-219ENST00000523058 RAD54L2Q9Y4B4 1467 aa42.81■■■■■ 4.44
DENND3-219ENST00000523058 WDR97A6NE52 1622 aa42.76■■■■■ 4.44
DENND3-219ENST00000523058 TRIM41Q8WV44 630 aa42.7■■■■■ 4.43
DENND3-219ENST00000523058 TDRD9Q8NDG6 1382 aaKnown RBP42.65■■■■■ 4.42
DENND3-219ENST00000523058 CHD1O14646 1710 aa42.62■■■■■ 4.41
DENND3-219ENST00000523058 RIMBP3CA6NJZ7 1639 aa42.49■■■■■ 4.39
DENND3-219ENST00000523058 RIMBP3BA6NNM3 1639 aa42.49■■■■■ 4.39
DENND3-219ENST00000523058 RIMBP3Q9UFD9 1639 aa42.49■■■■■ 4.39
DENND3-219ENST00000523058 FBLN2P98095 1184 aa42.48■■■■■ 4.39
DENND3-219ENST00000523058 GRIN2BQ13224 1484 aa42.46■■■■■ 4.39
DENND3-219ENST00000523058 SNAPC4Q5SXM2 1469 aa42.46■■■■■ 4.39
DENND3-219ENST00000523058 MAGI1Q96QZ7 1491 aaPredicted RBP42.43■■■■■ 4.38
DENND3-219ENST00000523058 ARHGEF11O15085 1522 aa42.41■■■■■ 4.38
DENND3-219ENST00000523058 ABCA10Q8WWZ4 1543 aa42.41■■■■■ 4.38
DENND3-219ENST00000523058 GAPVD1Q14C86 1478 aa42.36■■■■■ 4.37
DENND3-219ENST00000523058 BIVM-ERCC5R4GMW8 1640 aa42.35■■■■■ 4.37
DENND3-219ENST00000523058 WRNQ14191 1432 aaPredicted RBP eCLIP42.34■■■■■ 4.37
DENND3-219ENST00000523058 TOP2BQ02880 1626 aa42.34■■■■■ 4.37
DENND3-219ENST00000523058 PBRM1Q86U86 1689 aa42.33■■■■■ 4.37
DENND3-219ENST00000523058 ABCA5Q8WWZ7 1642 aa42.3■■■■■ 4.36
DENND3-219ENST00000523058 CHMP7Q8WUX9 453 aaPredicted RBP42.29■■■■■ 4.36
DENND3-219ENST00000523058 SYNJ2O15056 1496 aa42.26■■■■■ 4.36
DENND3-219ENST00000523058 SYNJ1O43426 1573 aa42.23■■■■■ 4.35
DENND3-219ENST00000523058 CLASP1Q7Z460 1538 aa42.15■■■■■ 4.34
DENND3-219ENST00000523058 CYB5RLQ6IPT4 315 aa42.02■■■■■ 4.32
DENND3-219ENST00000523058 ARAP1Q96P48 1450 aa41.99■■■■■ 4.31
DENND3-219ENST00000523058 ADAMTS12P58397 1594 aa41.93■■■■■ 4.3
DENND3-219ENST00000523058 ERICH3Q5RHP9 1530 aa41.91■■■■■ 4.3
DENND3-219ENST00000523058 GRIN2AQ12879 1464 aa41.9■■■■■ 4.3
DENND3-219ENST00000523058 FHAD1B1AJZ9 1412 aa41.86■■■■■ 4.29
DENND3-219ENST00000523058 NUP160Q12769 1436 aa41.74■■■■■ 4.27
DENND3-219ENST00000523058 CEP170Q5SW79 1584 aa41.7■■■■■ 4.27
DENND3-219ENST00000523058 KIF27Q86VH2 1401 aa41.52■■■■■ 4.24
DENND3-219ENST00000523058 SHROOM2Q13796 1616 aa41.52■■■■■ 4.24
DENND3-219ENST00000523058 ERCC6L2Q5T890 1561 aa41.43■■■■■ 4.22
DENND3-219ENST00000523058 TRHP20396 242 aaPredicted RBP41.42■■■■■ 4.22
DENND3-219ENST00000523058 CUL7Q14999 1698 aa41.42■■■■■ 4.22
DENND3-219ENST00000523058 IGF1RP08069 1367 aa41.4■■■■■ 4.22
DENND3-219ENST00000523058 RUSC2Q8N2Y8 1516 aa41.34■■■■■ 4.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms