RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, humanhuman

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-215ENST00000522963 NISCHQ9Y2I1 1504 aa28.36■■■□□ 2.13
PVT1-215ENST00000522963 CCDC180Q9P1Z9 1646 aa25.18■■□□□ 1.62
PVT1-215ENST00000522963 ABCC9O60706 1549 aa24.76■■□□□ 1.55
PVT1-215ENST00000522963 DCAF8L2P0C7V8 631 aa23.91■■□□□ 1.42
PVT1-215ENST00000522963 RB1CC1Q8TDY2 1594 aa23.74■■□□□ 1.39
PVT1-215ENST00000522963 NACADO15069 1562 aa23.68■■□□□ 1.38
PVT1-215ENST00000522963 ZCCHC6Q5VYS8 1495 aaKnown RBP23.61■■□□□ 1.37
PVT1-215ENST00000522963 MYO15BQ96JP2 1530 aa23.45■■□□□ 1.34
PVT1-215ENST00000522963 DCAF1Q9Y4B6 1507 aa23.38■■□□□ 1.33
PVT1-215ENST00000522963 UNC13AQ9UPW8 1703 aa23.23■■□□□ 1.31
PVT1-215ENST00000522963 PABPN1Q86U42 306 aaKnown RBP eCLIP23.17■■□□□ 1.3
PVT1-215ENST00000522963 SCRIBQ14160 1630 aa23.09■■□□□ 1.29
PVT1-215ENST00000522963 BICRAQ9NZM4 1560 aa23■■□□□ 1.27
PVT1-215ENST00000522963 DNAJC5BQ9UF47 199 aa22.69■■□□□ 1.22
PVT1-215ENST00000522963 SHROOM4Q9ULL8 1493 aa22.66■■□□□ 1.22
PVT1-215ENST00000522963 EIF4G1Q04637 1599 aaKnown RBP22.41■■□□□ 1.18
PVT1-215ENST00000522963 CC2D2AQ9P2K1 1620 aa22.35■■□□□ 1.17
PVT1-215ENST00000522963 CECR2Q9BXF3 1484 aa22.2■■□□□ 1.14
PVT1-215ENST00000522963 SMARCA4P51532 1647 aa22.02■■□□□ 1.12
PVT1-215ENST00000522963 BAZ1AQ9NRL2 1556 aaPredicted RBP21.99■■□□□ 1.11
PVT1-215ENST00000522963 MROH2BQ7Z745 1585 aa21.9■■□□□ 1.1
PVT1-215ENST00000522963 ATAD2BQ9ULI0 1458 aa21.89■■□□□ 1.09
PVT1-215ENST00000522963 SMARCA2P51531 1590 aa21.86■■□□□ 1.09
PVT1-215ENST00000522963 NCAPD3P42695 1498 aa21.83■■□□□ 1.09
PVT1-215ENST00000522963 BAZ1BQ9UIG0 1483 aaKnown RBP21.75■■□□□ 1.07
PVT1-215ENST00000522963 HMGXB3Q12766 1538 aa21.73■■□□□ 1.07
PVT1-215ENST00000522963 PEG3Q9GZU2 1588 aa21.72■■□□□ 1.07
PVT1-215ENST00000522963 WIZO95785 1651 aa21.69■■□□□ 1.06
PVT1-215ENST00000522963 RSF1Q96T23 1441 aaPredicted RBP21.63■■□□□ 1.05
PVT1-215ENST00000522963 NESP48681 1621 aa21.41■■□□□ 1.02
PVT1-215ENST00000522963 SUPT5HO00267 1087 aaKnown RBP21.41■■□□□ 1.02
PVT1-215ENST00000522963 TOP2AP11388 1531 aaKnown RBP21.4■■□□□ 1.02
PVT1-215ENST00000522963 ERCC6Q03468 1493 aa21.34■■□□□ 1.01
PVT1-215ENST00000522963 LAMC3Q9Y6N6 1575 aa21.27■■□□□ 1
PVT1-215ENST00000522963 CADPSQ9ULU8 1353 aa21.24■□□□□ 0.99
PVT1-215ENST00000522963 CCDC88BA6NC98 1476 aa21.18■□□□□ 0.98
PVT1-215ENST00000522963 PDS5BQ9NTI5 1447 aa21.17■□□□□ 0.98
PVT1-215ENST00000522963 KIF21AQ7Z4S6 1674 aa21.15■□□□□ 0.98
PVT1-215ENST00000522963 CFTRP13569 1480 aa21.09■□□□□ 0.97
PVT1-215ENST00000522963 FANCD2Q9BXW9 1451 aa21.02■□□□□ 0.96
PVT1-215ENST00000522963 THOC2Q8NI27 1593 aaKnown RBP21.02■□□□□ 0.95
PVT1-215ENST00000522963 CUX2O14529 1486 aa21.01■□□□□ 0.95
PVT1-215ENST00000522963 CEP164Q9UPV0 1460 aa21■□□□□ 0.95
PVT1-215ENST00000522963 PRDM2Q13029 1718 aa20.97■□□□□ 0.95
PVT1-215ENST00000522963 MRC2Q9UBG0 1479 aa20.95■□□□□ 0.94
PVT1-215ENST00000522963 WDR62O43379 1518 aa20.84■□□□□ 0.93
PVT1-215ENST00000522963 URB2Q14146 1524 aaKnown RBP20.8■□□□□ 0.92
PVT1-215ENST00000522963 TOPBP1Q92547 1522 aa20.68■□□□□ 0.9
PVT1-215ENST00000522963 DNMBPQ6XZF7 1577 aa20.65■□□□□ 0.9
PVT1-215ENST00000522963 ABCC8Q09428 1581 aa20.63■□□□□ 0.89
PVT1-215ENST00000522963 CUX1P39880 1505 aa20.53■□□□□ 0.88
PVT1-215ENST00000522963 IFT140Q96RY7 1462 aa20.53■□□□□ 0.88
PVT1-215ENST00000522963 POLA1P09884 1462 aaPredicted RBP20.5■□□□□ 0.87
PVT1-215ENST00000522963 FGD5Q6ZNL6 1462 aa20.48■□□□□ 0.87
PVT1-215ENST00000522963 ZNF608Q9ULD9 1512 aaPredicted RBP20.48■□□□□ 0.87
PVT1-215ENST00000522963 RAD54L2Q9Y4B4 1467 aa20.47■□□□□ 0.87
PVT1-215ENST00000522963 SOGA1O94964 1423 aa20.45■□□□□ 0.86
PVT1-215ENST00000522963 TARBP1Q13395 1621 aaKnown RBP20.42■□□□□ 0.86
PVT1-215ENST00000522963 WRNQ14191 1432 aaPredicted RBP eCLIP20.42■□□□□ 0.86
PVT1-215ENST00000522963 DNAJC5Q9H3Z4 198 aa20.39■□□□□ 0.85
PVT1-215ENST00000522963 AQRO60306 1485 aaKnown RBP eCLIP20.38■□□□□ 0.85
PVT1-215ENST00000522963 EIF4G3O43432 1585 aaKnown RBP20.38■□□□□ 0.85
PVT1-215ENST00000522963 SYNJ1O43426 1573 aa20.37■□□□□ 0.85
PVT1-215ENST00000522963 TDRD9Q8NDG6 1382 aaKnown RBP20.36■□□□□ 0.85
PVT1-215ENST00000522963 TOP2BQ02880 1626 aa20.35■□□□□ 0.85
PVT1-215ENST00000522963 BIVM-ERCC5R4GMW8 1640 aa20.34■□□□□ 0.85
PVT1-215ENST00000522963 CHIC1Q5VXU3 224 aa20.26■□□□□ 0.83
PVT1-215ENST00000522963 WDR97A6NE52 1622 aa20.26■□□□□ 0.83
PVT1-215ENST00000522963 ABCA10Q8WWZ4 1543 aa20.23■□□□□ 0.83
PVT1-215ENST00000522963 FBLN2P98095 1184 aa20.23■□□□□ 0.83
PVT1-215ENST00000522963 OSCARQ8IYS5 282 aa20.22■□□□□ 0.83
PVT1-215ENST00000522963 GAPVD1Q14C86 1478 aa20.2■□□□□ 0.82
PVT1-215ENST00000522963 GRIN2BQ13224 1484 aa20.18■□□□□ 0.82
PVT1-215ENST00000522963 SNAPC4Q5SXM2 1469 aa20.18■□□□□ 0.82
PVT1-215ENST00000522963 TRIM41Q8WV44 630 aa20.18■□□□□ 0.82
PVT1-215ENST00000522963 PBRM1Q86U86 1689 aa20.17■□□□□ 0.82
PVT1-215ENST00000522963 CHD1O14646 1710 aa20.16■□□□□ 0.82
PVT1-215ENST00000522963 ABCA5Q8WWZ7 1642 aa20.16■□□□□ 0.82
PVT1-215ENST00000522963 CHMP7Q8WUX9 453 aaPredicted RBP20.12■□□□□ 0.81
PVT1-215ENST00000522963 MAGI1Q96QZ7 1491 aaPredicted RBP20.11■□□□□ 0.81
PVT1-215ENST00000522963 SYNJ2O15056 1496 aa20.04■□□□□ 0.8
PVT1-215ENST00000522963 ERICH3Q5RHP9 1530 aa19.99■□□□□ 0.79
PVT1-215ENST00000522963 KIF27Q86VH2 1401 aa19.99■□□□□ 0.79
PVT1-215ENST00000522963 ADAMTS12P58397 1594 aa19.98■□□□□ 0.79
PVT1-215ENST00000522963 FHAD1B1AJZ9 1412 aa19.95■□□□□ 0.78
PVT1-215ENST00000522963 GRIN2AQ12879 1464 aa19.92■□□□□ 0.78
PVT1-215ENST00000522963 IGF1RP08069 1367 aa19.89■□□□□ 0.77
PVT1-215ENST00000522963 RIMBP3CA6NJZ7 1639 aa19.87■□□□□ 0.77
PVT1-215ENST00000522963 RIMBP3BA6NNM3 1639 aa19.87■□□□□ 0.77
PVT1-215ENST00000522963 RIMBP3Q9UFD9 1639 aa19.87■□□□□ 0.77
PVT1-215ENST00000522963 CLASP1Q7Z460 1538 aa19.86■□□□□ 0.77
PVT1-215ENST00000522963 RUSC2Q8N2Y8 1516 aa19.86■□□□□ 0.77
PVT1-215ENST00000522963 ARHGEF11O15085 1522 aa19.86■□□□□ 0.77
PVT1-215ENST00000522963 CEP170Q5SW79 1584 aa19.83■□□□□ 0.77
PVT1-215ENST00000522963 CUL7Q14999 1698 aa19.83■□□□□ 0.76
PVT1-215ENST00000522963 CARMIL1Q5VZK9 1371 aa19.81■□□□□ 0.76
PVT1-215ENST00000522963 NUP160Q12769 1436 aa19.8■□□□□ 0.76
PVT1-215ENST00000522963 FAM9AQ8IZU1 332 aaPredicted RBP19.79■□□□□ 0.76
PVT1-215ENST00000522963 EEA1Q15075 1411 aa19.77■□□□□ 0.76
PVT1-215ENST00000522963 CYB5RLQ6IPT4 315 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms