RNA–Protein interactions for RNA: ENST00000522749.5

CLK4-212, Transcript of CDC like kinase 4, humanhuman

TSL 3

Gene CLK4, Length 572 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-212ENST00000522749 NISCHQ9Y2I1 1504 aa15.68■□□□□ 0.1
CLK4-212ENST00000522749 CCDC180Q9P1Z9 1646 aa14.06□□□□□ -0.16
CLK4-212ENST00000522749 ABCC9O60706 1549 aa13.53□□□□□ -0.24
CLK4-212ENST00000522749 RB1CC1Q8TDY2 1594 aa13.11□□□□□ -0.31
CLK4-212ENST00000522749 NACADO15069 1562 aa13.1□□□□□ -0.31
CLK4-212ENST00000522749 ZCCHC6Q5VYS8 1495 aaKnown RBP13.1□□□□□ -0.31
CLK4-212ENST00000522749 UNC13AQ9UPW8 1703 aa13.05□□□□□ -0.32
CLK4-212ENST00000522749 MYO15BQ96JP2 1530 aa13.02□□□□□ -0.33
CLK4-212ENST00000522749 DCAF1Q9Y4B6 1507 aa12.99□□□□□ -0.33
CLK4-212ENST00000522749 DCAF8L2P0C7V8 631 aa12.91□□□□□ -0.34
CLK4-212ENST00000522749 SCRIBQ14160 1630 aa12.77□□□□□ -0.36
CLK4-212ENST00000522749 BICRAQ9NZM4 1560 aa12.74□□□□□ -0.37
CLK4-212ENST00000522749 PABPN1Q86U42 306 aaKnown RBP eCLIP12.57□□□□□ -0.4
CLK4-212ENST00000522749 SHROOM4Q9ULL8 1493 aa12.55□□□□□ -0.4
CLK4-212ENST00000522749 EIF4G1Q04637 1599 aaKnown RBP12.37□□□□□ -0.43
CLK4-212ENST00000522749 CC2D2AQ9P2K1 1620 aa12.33□□□□□ -0.44
CLK4-212ENST00000522749 DNAJC5BQ9UF47 199 aa12.3□□□□□ -0.44
CLK4-212ENST00000522749 SMARCA4P51532 1647 aa12.23□□□□□ -0.45
CLK4-212ENST00000522749 CECR2Q9BXF3 1484 aa12.19□□□□□ -0.46
CLK4-212ENST00000522749 BAZ1AQ9NRL2 1556 aaPredicted RBP12.16□□□□□ -0.46
CLK4-212ENST00000522749 MROH2BQ7Z745 1585 aa12.09□□□□□ -0.47
CLK4-212ENST00000522749 PEG3Q9GZU2 1588 aa12.09□□□□□ -0.47
CLK4-212ENST00000522749 SMARCA2P51531 1590 aa12.09□□□□□ -0.47
CLK4-212ENST00000522749 WIZO95785 1651 aa12.06□□□□□ -0.48
CLK4-212ENST00000522749 ATAD2BQ9ULI0 1458 aa12.05□□□□□ -0.48
CLK4-212ENST00000522749 HMGXB3Q12766 1538 aa12.05□□□□□ -0.48
CLK4-212ENST00000522749 NCAPD3P42695 1498 aa12.01□□□□□ -0.49
CLK4-212ENST00000522749 BAZ1BQ9UIG0 1483 aaKnown RBP11.96□□□□□ -0.49
CLK4-212ENST00000522749 RSF1Q96T23 1441 aaPredicted RBP11.92□□□□□ -0.5
CLK4-212ENST00000522749 TOP2AP11388 1531 aaKnown RBP11.87□□□□□ -0.51
CLK4-212ENST00000522749 PRDM2Q13029 1718 aa11.85□□□□□ -0.51
CLK4-212ENST00000522749 KIF21AQ7Z4S6 1674 aa11.78□□□□□ -0.52
CLK4-212ENST00000522749 LAMC3Q9Y6N6 1575 aa11.77□□□□□ -0.53
CLK4-212ENST00000522749 NESP48681 1621 aa11.75□□□□□ -0.53
CLK4-212ENST00000522749 CCDC88BA6NC98 1476 aa11.68□□□□□ -0.54
CLK4-212ENST00000522749 THOC2Q8NI27 1593 aaKnown RBP11.66□□□□□ -0.54
CLK4-212ENST00000522749 ERCC6Q03468 1493 aa11.64□□□□□ -0.55
CLK4-212ENST00000522749 CADPSQ9ULU8 1353 aa11.63□□□□□ -0.55
CLK4-212ENST00000522749 CFTRP13569 1480 aa11.62□□□□□ -0.55
CLK4-212ENST00000522749 SUPT5HO00267 1087 aaKnown RBP11.59□□□□□ -0.55
CLK4-212ENST00000522749 PDS5BQ9NTI5 1447 aa11.58□□□□□ -0.56
CLK4-212ENST00000522749 FANCD2Q9BXW9 1451 aa11.55□□□□□ -0.56
CLK4-212ENST00000522749 CEP164Q9UPV0 1460 aa11.55□□□□□ -0.56
CLK4-212ENST00000522749 CUX2O14529 1486 aa11.52□□□□□ -0.56
CLK4-212ENST00000522749 WDR62O43379 1518 aa11.52□□□□□ -0.57
CLK4-212ENST00000522749 MRC2Q9UBG0 1479 aa11.51□□□□□ -0.57
CLK4-212ENST00000522749 URB2Q14146 1524 aaKnown RBP11.46□□□□□ -0.57
CLK4-212ENST00000522749 DNMBPQ6XZF7 1577 aa11.43□□□□□ -0.58
CLK4-212ENST00000522749 TOPBP1Q92547 1522 aa11.4□□□□□ -0.58
CLK4-212ENST00000522749 ABCC8Q09428 1581 aa11.37□□□□□ -0.59
CLK4-212ENST00000522749 CUX1P39880 1505 aa11.36□□□□□ -0.59
CLK4-212ENST00000522749 BIVM-ERCC5R4GMW8 1640 aa11.36□□□□□ -0.59
CLK4-212ENST00000522749 WDR97A6NE52 1622 aa11.35□□□□□ -0.59
CLK4-212ENST00000522749 TARBP1Q13395 1621 aaKnown RBP11.35□□□□□ -0.59
CLK4-212ENST00000522749 SYNJ1O43426 1573 aa11.32□□□□□ -0.6
CLK4-212ENST00000522749 TOP2BQ02880 1626 aa11.31□□□□□ -0.6
CLK4-212ENST00000522749 EIF4G3O43432 1585 aaKnown RBP11.3□□□□□ -0.6
CLK4-212ENST00000522749 POLA1P09884 1462 aaPredicted RBP11.3□□□□□ -0.6
CLK4-212ENST00000522749 PBRM1Q86U86 1689 aa11.28□□□□□ -0.6
CLK4-212ENST00000522749 FGD5Q6ZNL6 1462 aa11.28□□□□□ -0.6
CLK4-212ENST00000522749 IFT140Q96RY7 1462 aa11.28□□□□□ -0.6
CLK4-212ENST00000522749 ZNF608Q9ULD9 1512 aaPredicted RBP11.25□□□□□ -0.61
CLK4-212ENST00000522749 WRNQ14191 1432 aaPredicted RBP eCLIP11.24□□□□□ -0.61
CLK4-212ENST00000522749 CHD1O14646 1710 aa11.23□□□□□ -0.61
CLK4-212ENST00000522749 RAD54L2Q9Y4B4 1467 aa11.23□□□□□ -0.61
CLK4-212ENST00000522749 ABCA5Q8WWZ7 1642 aa11.22□□□□□ -0.61
CLK4-212ENST00000522749 SOGA1O94964 1423 aa11.19□□□□□ -0.62
CLK4-212ENST00000522749 ABCA10Q8WWZ4 1543 aa11.18□□□□□ -0.62
CLK4-212ENST00000522749 AQRO60306 1485 aaKnown RBP eCLIP11.15□□□□□ -0.621e-8■■■□□ 18.8
CLK4-212ENST00000522749 TDRD9Q8NDG6 1382 aaKnown RBP11.11□□□□□ -0.63
CLK4-212ENST00000522749 GAPVD1Q14C86 1478 aa11.1□□□□□ -0.63
CLK4-212ENST00000522749 SNAPC4Q5SXM2 1469 aa11.09□□□□□ -0.63
CLK4-212ENST00000522749 AEBP2Q6ZN18 517 aaPredicted RBP11.09□□□□□ -0.63
CLK4-212ENST00000522749 ADAMTS12P58397 1594 aa11.08□□□□□ -0.64
CLK4-212ENST00000522749 GRIN2BQ13224 1484 aa11.08□□□□□ -0.64
CLK4-212ENST00000522749 MAGI1Q96QZ7 1491 aaPredicted RBP11.07□□□□□ -0.64
CLK4-212ENST00000522749 ERICH3Q5RHP9 1530 aa11.06□□□□□ -0.64
CLK4-212ENST00000522749 CUL7Q14999 1698 aa11.05□□□□□ -0.64
CLK4-212ENST00000522749 SYNJ2O15056 1496 aa11.02□□□□□ -0.65
CLK4-212ENST00000522749 DNAJC5Q9H3Z4 198 aa11□□□□□ -0.65
CLK4-212ENST00000522749 CLASP1Q7Z460 1538 aa10.99□□□□□ -0.65
CLK4-212ENST00000522749 KIF27Q86VH2 1401 aa10.98□□□□□ -0.65
CLK4-212ENST00000522749 CEP170Q5SW79 1584 aa10.98□□□□□ -0.65
CLK4-212ENST00000522749 GRIN2AQ12879 1464 aa10.97□□□□□ -0.65
CLK4-212ENST00000522749 RIMBP3CA6NJZ7 1639 aa10.96□□□□□ -0.65
CLK4-212ENST00000522749 RIMBP3BA6NNM3 1639 aa10.96□□□□□ -0.65
CLK4-212ENST00000522749 RIMBP3Q9UFD9 1639 aa10.96□□□□□ -0.65
CLK4-212ENST00000522749 CTTNBP2Q8WZ74 1663 aa10.95□□□□□ -0.66
CLK4-212ENST00000522749 RUSC2Q8N2Y8 1516 aa10.95□□□□□ -0.66
CLK4-212ENST00000522749 FHAD1B1AJZ9 1412 aa10.95□□□□□ -0.66
CLK4-212ENST00000522749 OSCARQ8IYS5 282 aa10.94□□□□□ -0.66
CLK4-212ENST00000522749 FBLN2P98095 1184 aa10.93□□□□□ -0.66
CLK4-212ENST00000522749 TRIM41Q8WV44 630 aa10.93□□□□□ -0.66
CLK4-212ENST00000522749 SHROOM2Q13796 1616 aa10.93□□□□□ -0.66
CLK4-212ENST00000522749 CHMP7Q8WUX9 453 aaPredicted RBP10.91□□□□□ -0.66
CLK4-212ENST00000522749 NUP160Q12769 1436 aa10.91□□□□□ -0.66
CLK4-212ENST00000522749 IGF1RP08069 1367 aa10.9□□□□□ -0.66
CLK4-212ENST00000522749 ARHGEF11O15085 1522 aa10.89□□□□□ -0.67
CLK4-212ENST00000522749 CHIC1Q5VXU3 224 aa10.86□□□□□ -0.67
CLK4-212ENST00000522749 CARMIL1Q5VZK9 1371 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms