RNA–Protein interactions for RNA: ENST00000522136.5

CLK4-210, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 1,955 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-210ENST00000522136 NISCHQ9Y2I1 1504 aa31.33■■■□□ 2.61
CLK4-210ENST00000522136 CCDC180Q9P1Z9 1646 aa27.51■■■□□ 2
CLK4-210ENST00000522136 ABCC9O60706 1549 aa26.49■■□□□ 1.83
CLK4-210ENST00000522136 ZCCHC6Q5VYS8 1495 aaKnown RBP26.21■■□□□ 1.79
CLK4-210ENST00000522136 DCAF8L2P0C7V8 631 aa26.09■■□□□ 1.77
CLK4-210ENST00000522136 DCAF1Q9Y4B6 1507 aa25.86■■□□□ 1.73
CLK4-210ENST00000522136 NACADO15069 1562 aa25.74■■□□□ 1.71
CLK4-210ENST00000522136 MYO15BQ96JP2 1530 aa25.72■■□□□ 1.71
CLK4-210ENST00000522136 RB1CC1Q8TDY2 1594 aa25.63■■□□□ 1.69
CLK4-210ENST00000522136 SHROOM4Q9ULL8 1493 aa25.29■■□□□ 1.64
CLK4-210ENST00000522136 SCRIBQ14160 1630 aa25.28■■□□□ 1.64
CLK4-210ENST00000522136 UNC13AQ9UPW8 1703 aa25.15■■□□□ 1.62
CLK4-210ENST00000522136 PABPN1Q86U42 306 aaKnown RBP eCLIP24.91■■□□□ 1.58
CLK4-210ENST00000522136 BICRAQ9NZM4 1560 aa24.9■■□□□ 1.58
CLK4-210ENST00000522136 CECR2Q9BXF3 1484 aa24.42■■□□□ 1.5
CLK4-210ENST00000522136 MROH2BQ7Z745 1585 aa24.21■■□□□ 1.47
CLK4-210ENST00000522136 BAZ1AQ9NRL2 1556 aaPredicted RBP24.21■■□□□ 1.47
CLK4-210ENST00000522136 SMARCA4P51532 1647 aa24.19■■□□□ 1.46
CLK4-210ENST00000522136 EIF4G1Q04637 1599 aaKnown RBP24.17■■□□□ 1.46
CLK4-210ENST00000522136 RSF1Q96T23 1441 aaPredicted RBP24.14■■□□□ 1.45
CLK4-210ENST00000522136 SUPT5HO00267 1087 aaKnown RBP24.1■■□□□ 1.45
CLK4-210ENST00000522136 WIZO95785 1651 aa24■■□□□ 1.43
CLK4-210ENST00000522136 CC2D2AQ9P2K1 1620 aa23.95■■□□□ 1.42
CLK4-210ENST00000522136 ATAD2BQ9ULI0 1458 aa23.91■■□□□ 1.42
CLK4-210ENST00000522136 PEG3Q9GZU2 1588 aa23.88■■□□□ 1.41
CLK4-210ENST00000522136 SMARCA2P51531 1590 aa23.86■■□□□ 1.41
CLK4-210ENST00000522136 DNAJC5BQ9UF47 199 aa23.83■■□□□ 1.41
CLK4-210ENST00000522136 NCAPD3P42695 1498 aa23.77■■□□□ 1.4
CLK4-210ENST00000522136 BAZ1BQ9UIG0 1483 aaKnown RBP23.74■■□□□ 1.39
CLK4-210ENST00000522136 TOP2AP11388 1531 aaKnown RBP23.7■■□□□ 1.38
CLK4-210ENST00000522136 HMGXB3Q12766 1538 aa23.68■■□□□ 1.38
CLK4-210ENST00000522136 CCDC88BA6NC98 1476 aa23.47■■□□□ 1.35
CLK4-210ENST00000522136 CADPSQ9ULU8 1353 aa23.13■■□□□ 1.29
CLK4-210ENST00000522136 NESP48681 1621 aa23.12■■□□□ 1.29
CLK4-210ENST00000522136 CFTRP13569 1480 aa23.11■■□□□ 1.29
CLK4-210ENST00000522136 LAMC3Q9Y6N6 1575 aa23.03■■□□□ 1.28
CLK4-210ENST00000522136 PRDM2Q13029 1718 aa22.97■■□□□ 1.27
CLK4-210ENST00000522136 FANCD2Q9BXW9 1451 aa22.89■■□□□ 1.25
CLK4-210ENST00000522136 PDS5BQ9NTI5 1447 aa22.86■■□□□ 1.25
CLK4-210ENST00000522136 ABCC8Q09428 1581 aa22.84■■□□□ 1.25
CLK4-210ENST00000522136 KIF21AQ7Z4S6 1674 aa22.83■■□□□ 1.24
CLK4-210ENST00000522136 CHIC1Q5VXU3 224 aa22.8■■□□□ 1.24
CLK4-210ENST00000522136 CEP164Q9UPV0 1460 aa22.77■■□□□ 1.24
CLK4-210ENST00000522136 ERCC6Q03468 1493 aa22.74■■□□□ 1.23
CLK4-210ENST00000522136 WRNQ14191 1432 aaPredicted RBP eCLIP22.72■■□□□ 1.23
CLK4-210ENST00000522136 SYNJ1O43426 1573 aa22.67■■□□□ 1.22
CLK4-210ENST00000522136 CUX1P39880 1505 aa22.66■■□□□ 1.22
CLK4-210ENST00000522136 TRIM41Q8WV44 630 aa22.66■■□□□ 1.22
CLK4-210ENST00000522136 URB2Q14146 1524 aaKnown RBP22.64■■□□□ 1.21
CLK4-210ENST00000522136 MRC2Q9UBG0 1479 aa22.61■■□□□ 1.21
CLK4-210ENST00000522136 TOP2BQ02880 1626 aa22.59■■□□□ 1.21
CLK4-210ENST00000522136 TOPBP1Q92547 1522 aa22.59■■□□□ 1.21
CLK4-210ENST00000522136 DNMBPQ6XZF7 1577 aa22.58■■□□□ 1.21
CLK4-210ENST00000522136 BIVM-ERCC5R4GMW8 1640 aa22.58■■□□□ 1.2
CLK4-210ENST00000522136 THOC2Q8NI27 1593 aaKnown RBP22.55■■□□□ 1.2
CLK4-210ENST00000522136 WDR62O43379 1518 aa22.5■■□□□ 1.19
CLK4-210ENST00000522136 FGD5Q6ZNL6 1462 aa22.48■■□□□ 1.19
CLK4-210ENST00000522136 POLA1P09884 1462 aaPredicted RBP22.44■■□□□ 1.18
CLK4-210ENST00000522136 RAD54L2Q9Y4B4 1467 aa22.39■■□□□ 1.17
CLK4-210ENST00000522136 SOGA1O94964 1423 aa22.37■■□□□ 1.17
CLK4-210ENST00000522136 CUX2O14529 1486 aa22.35■■□□□ 1.17
CLK4-210ENST00000522136 TARBP1Q13395 1621 aaKnown RBP22.29■■□□□ 1.16
CLK4-210ENST00000522136 RUSC2Q8N2Y8 1516 aa22.28■■□□□ 1.16
CLK4-210ENST00000522136 FAM9AQ8IZU1 332 aaPredicted RBP22.28■■□□□ 1.16
CLK4-210ENST00000522136 IFT140Q96RY7 1462 aa22.25■■□□□ 1.15
CLK4-210ENST00000522136 ABCA10Q8WWZ4 1543 aa22.25■■□□□ 1.15
CLK4-210ENST00000522136 WDR97A6NE52 1622 aa22.24■■□□□ 1.15
CLK4-210ENST00000522136 TDRD9Q8NDG6 1382 aaKnown RBP22.21■■□□□ 1.15
CLK4-210ENST00000522136 ZNF608Q9ULD9 1512 aaPredicted RBP22.19■■□□□ 1.14
CLK4-210ENST00000522136 KIF27Q86VH2 1401 aa22.18■■□□□ 1.14
CLK4-210ENST00000522136 AQRO60306 1485 aaKnown RBP eCLIP22.15■■□□□ 1.141e-8■■■□□ 18.8
CLK4-210ENST00000522136 ABCA5Q8WWZ7 1642 aa22.12■■□□□ 1.13
CLK4-210ENST00000522136 EEA1Q15075 1411 aa22.11■■□□□ 1.13
CLK4-210ENST00000522136 GAPVD1Q14C86 1478 aa22.1■■□□□ 1.13
CLK4-210ENST00000522136 CSRNP3Q8WYN3 585 aa22.09■■□□□ 1.13
CLK4-210ENST00000522136 EIF4G3O43432 1585 aaKnown RBP22.08■■□□□ 1.13
CLK4-210ENST00000522136 IGF1RP08069 1367 aa22.06■■□□□ 1.12
CLK4-210ENST00000522136 PBRM1Q86U86 1689 aa22.02■■□□□ 1.12
CLK4-210ENST00000522136 EHMT2Q96KQ7 1210 aa22.01■■□□□ 1.11
CLK4-210ENST00000522136 GRIN2BQ13224 1484 aa22■■□□□ 1.11
CLK4-210ENST00000522136 ERICH3Q5RHP9 1530 aa21.98■■□□□ 1.11
CLK4-210ENST00000522136 LOC105371045A0A1W2PR82 267 aa21.96■■□□□ 1.11
CLK4-210ENST00000522136 CARMIL1Q5VZK9 1371 aa21.93■■□□□ 1.1
CLK4-210ENST00000522136 SNAPC4Q5SXM2 1469 aa21.92■■□□□ 1.1
CLK4-210ENST00000522136 PRXQ9BXM0 1461 aa21.92■■□□□ 1.1
CLK4-210ENST00000522136 CUL7Q14999 1698 aa21.89■■□□□ 1.1
CLK4-210ENST00000522136 RAPGEF2Q9Y4G8 1499 aa21.88■■□□□ 1.09
CLK4-210ENST00000522136 KIF21BO75037 1637 aa21.87■■□□□ 1.09
CLK4-210ENST00000522136 ADAMTS12P58397 1594 aa21.86■■□□□ 1.09
CLK4-210ENST00000522136 MAGI1Q96QZ7 1491 aaPredicted RBP21.85■■□□□ 1.09
CLK4-210ENST00000522136 FHAD1B1AJZ9 1412 aa21.85■■□□□ 1.09
CLK4-210ENST00000522136 GOLGA3Q08378 1498 aa21.81■■□□□ 1.08
CLK4-210ENST00000522136 FBLN2P98095 1184 aa21.8■■□□□ 1.08
CLK4-210ENST00000522136 UBTFP17480 764 aaKnown RBP21.78■■□□□ 1.08
CLK4-210ENST00000522136 CHMP7Q8WUX9 453 aaPredicted RBP21.78■■□□□ 1.08
CLK4-210ENST00000522136 SYNJ2O15056 1496 aa21.77■■□□□ 1.08
CLK4-210ENST00000522136 GRIN2AQ12879 1464 aa21.72■■□□□ 1.07
CLK4-210ENST00000522136 CHD1O14646 1710 aa21.72■■□□□ 1.07
CLK4-210ENST00000522136 TNIKQ9UKE5 1360 aa21.66■■□□□ 1.06
CLK4-210ENST00000522136 CEP170Q5SW79 1584 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms