RNA–Protein interactions for RNA: ENST00000521621.5

CLK4-209, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 2,780 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-209ENST00000521621 NISCHQ9Y2I1 1504 aa23.31■■□□□ 1.32
CLK4-209ENST00000521621 CCDC180Q9P1Z9 1646 aa20.89■□□□□ 0.93
CLK4-209ENST00000521621 ABCC9O60706 1549 aa20.03■□□□□ 0.8
CLK4-209ENST00000521621 MYO15BQ96JP2 1530 aa19.61■□□□□ 0.73
CLK4-209ENST00000521621 NACADO15069 1562 aa19.57■□□□□ 0.72
CLK4-209ENST00000521621 RB1CC1Q8TDY2 1594 aa19.53■□□□□ 0.72
CLK4-209ENST00000521621 DCAF1Q9Y4B6 1507 aa19.49■□□□□ 0.71
CLK4-209ENST00000521621 ZCCHC6Q5VYS8 1495 aaKnown RBP19.45■□□□□ 0.7
CLK4-209ENST00000521621 UNC13AQ9UPW8 1703 aa19.07■□□□□ 0.64
CLK4-209ENST00000521621 DCAF8L2P0C7V8 631 aa18.97■□□□□ 0.63
CLK4-209ENST00000521621 SHROOM4Q9ULL8 1493 aa18.96■□□□□ 0.63
CLK4-209ENST00000521621 BICRAQ9NZM4 1560 aa18.92■□□□□ 0.62
CLK4-209ENST00000521621 SCRIBQ14160 1630 aa18.75■□□□□ 0.59
CLK4-209ENST00000521621 PABPN1Q86U42 306 aaKnown RBP eCLIP18.59■□□□□ 0.57
CLK4-209ENST00000521621 EIF4G1Q04637 1599 aaKnown RBP18.38■□□□□ 0.53
CLK4-209ENST00000521621 DNAJC5BQ9UF47 199 aa18.31■□□□□ 0.52
CLK4-209ENST00000521621 CC2D2AQ9P2K1 1620 aa18.27■□□□□ 0.51
CLK4-209ENST00000521621 BAZ1AQ9NRL2 1556 aaPredicted RBP18.09■□□□□ 0.49
CLK4-209ENST00000521621 CECR2Q9BXF3 1484 aa18.09■□□□□ 0.49
CLK4-209ENST00000521621 SMARCA4P51532 1647 aa18.09■□□□□ 0.49
CLK4-209ENST00000521621 PEG3Q9GZU2 1588 aa18.05■□□□□ 0.48
CLK4-209ENST00000521621 NCAPD3P42695 1498 aa18.01■□□□□ 0.47
CLK4-209ENST00000521621 SMARCA2P51531 1590 aa18.01■□□□□ 0.47
CLK4-209ENST00000521621 HMGXB3Q12766 1538 aa17.98■□□□□ 0.47
CLK4-209ENST00000521621 ATAD2BQ9ULI0 1458 aa17.94■□□□□ 0.46
CLK4-209ENST00000521621 MROH2BQ7Z745 1585 aa17.87■□□□□ 0.45
CLK4-209ENST00000521621 BAZ1BQ9UIG0 1483 aaKnown RBP17.76■□□□□ 0.43
CLK4-209ENST00000521621 RSF1Q96T23 1441 aaPredicted RBP17.69■□□□□ 0.42
CLK4-209ENST00000521621 WIZO95785 1651 aa17.67■□□□□ 0.42
CLK4-209ENST00000521621 TOP2AP11388 1531 aaKnown RBP17.61■□□□□ 0.41
CLK4-209ENST00000521621 LAMC3Q9Y6N6 1575 aa17.55■□□□□ 0.4
CLK4-209ENST00000521621 CADPSQ9ULU8 1353 aa17.4■□□□□ 0.38
CLK4-209ENST00000521621 PRDM2Q13029 1718 aa17.36■□□□□ 0.37
CLK4-209ENST00000521621 CFTRP13569 1480 aa17.36■□□□□ 0.37
CLK4-209ENST00000521621 NESP48681 1621 aa17.35■□□□□ 0.37
CLK4-209ENST00000521621 PDS5BQ9NTI5 1447 aa17.34■□□□□ 0.37
CLK4-209ENST00000521621 CUX2O14529 1486 aa17.33■□□□□ 0.36
CLK4-209ENST00000521621 THOC2Q8NI27 1593 aaKnown RBP17.3■□□□□ 0.36
CLK4-209ENST00000521621 CCDC88BA6NC98 1476 aa17.29■□□□□ 0.36
CLK4-209ENST00000521621 ERCC6Q03468 1493 aa17.29■□□□□ 0.36
CLK4-209ENST00000521621 KIF21AQ7Z4S6 1674 aa17.28■□□□□ 0.36
CLK4-209ENST00000521621 WDR62O43379 1518 aa17.19■□□□□ 0.34
CLK4-209ENST00000521621 MRC2Q9UBG0 1479 aa17.18■□□□□ 0.34
CLK4-209ENST00000521621 FANCD2Q9BXW9 1451 aa17.17■□□□□ 0.34
CLK4-209ENST00000521621 CEP164Q9UPV0 1460 aa17.17■□□□□ 0.34
CLK4-209ENST00000521621 ABCC8Q09428 1581 aa17.05■□□□□ 0.32
CLK4-209ENST00000521621 URB2Q14146 1524 aaKnown RBP17.01■□□□□ 0.31
CLK4-209ENST00000521621 DNMBPQ6XZF7 1577 aa16.97■□□□□ 0.31
CLK4-209ENST00000521621 TOPBP1Q92547 1522 aa16.93■□□□□ 0.3
CLK4-209ENST00000521621 SUPT5HO00267 1087 aaKnown RBP16.91■□□□□ 0.3
CLK4-209ENST00000521621 WDR97A6NE52 1622 aa16.87■□□□□ 0.29
CLK4-209ENST00000521621 IFT140Q96RY7 1462 aa16.86■□□□□ 0.29
CLK4-209ENST00000521621 TARBP1Q13395 1621 aaKnown RBP16.81■□□□□ 0.28
CLK4-209ENST00000521621 CUX1P39880 1505 aa16.79■□□□□ 0.28
CLK4-209ENST00000521621 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
CLK4-209ENST00000521621 POLA1P09884 1462 aaPredicted RBP16.76■□□□□ 0.27
CLK4-209ENST00000521621 TOP2BQ02880 1626 aa16.73■□□□□ 0.27
CLK4-209ENST00000521621 FGD5Q6ZNL6 1462 aa16.7■□□□□ 0.26
CLK4-209ENST00000521621 EIF4G3O43432 1585 aaKnown RBP16.68■□□□□ 0.26
CLK4-209ENST00000521621 WRNQ14191 1432 aaPredicted RBP eCLIP16.66■□□□□ 0.26
CLK4-209ENST00000521621 SOGA1O94964 1423 aa16.65■□□□□ 0.26
CLK4-209ENST00000521621 ABCA10Q8WWZ4 1543 aa16.64■□□□□ 0.26
CLK4-209ENST00000521621 ZNF608Q9ULD9 1512 aaPredicted RBP16.64■□□□□ 0.25
CLK4-209ENST00000521621 SYNJ1O43426 1573 aa16.63■□□□□ 0.25
CLK4-209ENST00000521621 ABCA5Q8WWZ7 1642 aa16.6■□□□□ 0.25
CLK4-209ENST00000521621 DNAJC5Q9H3Z4 198 aa16.6■□□□□ 0.25
CLK4-209ENST00000521621 RAD54L2Q9Y4B4 1467 aa16.59■□□□□ 0.25
CLK4-209ENST00000521621 PBRM1Q86U86 1689 aa16.54■□□□□ 0.24
CLK4-209ENST00000521621 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
CLK4-209ENST00000521621 GRIN2BQ13224 1484 aa16.53■□□□□ 0.24
CLK4-209ENST00000521621 AQRO60306 1485 aaKnown RBP eCLIP16.51■□□□□ 0.231e-8■■■□□ 18.8
CLK4-209ENST00000521621 GAPVD1Q14C86 1478 aa16.49■□□□□ 0.23
CLK4-209ENST00000521621 ERICH3Q5RHP9 1530 aa16.48■□□□□ 0.23
CLK4-209ENST00000521621 CHD1O14646 1710 aa16.46■□□□□ 0.23
CLK4-209ENST00000521621 TDRD9Q8NDG6 1382 aaKnown RBP16.45■□□□□ 0.22
CLK4-209ENST00000521621 SYNJ2O15056 1496 aa16.43■□□□□ 0.22
CLK4-209ENST00000521621 SNAPC4Q5SXM2 1469 aa16.43■□□□□ 0.22
CLK4-209ENST00000521621 ADAMTS12P58397 1594 aa16.41■□□□□ 0.22
CLK4-209ENST00000521621 OSCARQ8IYS5 282 aa16.41■□□□□ 0.22
CLK4-209ENST00000521621 CLASP1Q7Z460 1538 aa16.37■□□□□ 0.21
CLK4-209ENST00000521621 FHAD1B1AJZ9 1412 aa16.35■□□□□ 0.21
CLK4-209ENST00000521621 CUL7Q14999 1698 aa16.35■□□□□ 0.21
CLK4-209ENST00000521621 KIF27Q86VH2 1401 aa16.33■□□□□ 0.2
CLK4-209ENST00000521621 GRIN2AQ12879 1464 aa16.3■□□□□ 0.2
CLK4-209ENST00000521621 NUP160Q12769 1436 aa16.29■□□□□ 0.2
CLK4-209ENST00000521621 IGF1RP08069 1367 aa16.25■□□□□ 0.19
CLK4-209ENST00000521621 SHROOM2Q13796 1616 aa16.24■□□□□ 0.19
CLK4-209ENST00000521621 CHMP7Q8WUX9 453 aaPredicted RBP16.24■□□□□ 0.19
CLK4-209ENST00000521621 RIMBP3CA6NJZ7 1639 aa16.23■□□□□ 0.19
CLK4-209ENST00000521621 RIMBP3BA6NNM3 1639 aa16.23■□□□□ 0.19
CLK4-209ENST00000521621 RIMBP3Q9UFD9 1639 aa16.23■□□□□ 0.19
CLK4-209ENST00000521621 CEP170Q5SW79 1584 aa16.22■□□□□ 0.19
CLK4-209ENST00000521621 ARHGEF11O15085 1522 aa16.21■□□□□ 0.19
CLK4-209ENST00000521621 RUSC2Q8N2Y8 1516 aa16.17■□□□□ 0.18
CLK4-209ENST00000521621 EEA1Q15075 1411 aa16.14■□□□□ 0.17
CLK4-209ENST00000521621 FBLN2P98095 1184 aa16.13■□□□□ 0.17
CLK4-209ENST00000521621 KIAA0586Q9BVV6 1533 aa16.11■□□□□ 0.17
CLK4-209ENST00000521621 CARMIL1Q5VZK9 1371 aa16.11■□□□□ 0.17
CLK4-209ENST00000521621 TRIM41Q8WV44 630 aa16.11■□□□□ 0.17
CLK4-209ENST00000521621 RAPGEF2Q9Y4G8 1499 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms