RNA–Protein interactions for RNA: ENST00000521434.5

MRPS28-207, Transcript of mitochondrial ribosomal protein S28, humanhuman

TSL 5 BASIC

Gene MRPS28, Length 585 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPS28-207ENST00000521434 NISCHQ9Y2I1 1504 aa22.81■■□□□ 1.24
MRPS28-207ENST00000521434 AEBP2Q6ZN18 517 aaPredicted RBP21.87■■□□□ 1.09
MRPS28-207ENST00000521434 CHIC1Q5VXU3 224 aa21.08■□□□□ 0.97
MRPS28-207ENST00000521434 ABCC9O60706 1549 aa20.99■□□□□ 0.95
MRPS28-207ENST00000521434 CCDC180Q9P1Z9 1646 aa20.67■□□□□ 0.9
MRPS28-207ENST00000521434 DNAJC5BQ9UF47 199 aa20.01■□□□□ 0.79
MRPS28-207ENST00000521434 RB1CC1Q8TDY2 1594 aa19.84■□□□□ 0.77
MRPS28-207ENST00000521434 NACADO15069 1562 aa19.61■□□□□ 0.73
MRPS28-207ENST00000521434 PABPN1Q86U42 306 aaKnown RBP eCLIP19.46■□□□□ 0.71
MRPS28-207ENST00000521434 UNC13AQ9UPW8 1703 aa19.44■□□□□ 0.7
MRPS28-207ENST00000521434 DCAF8L2P0C7V8 631 aa19.39■□□□□ 0.69
MRPS28-207ENST00000521434 BICRAQ9NZM4 1560 aa19.27■□□□□ 0.67
MRPS28-207ENST00000521434 MYO15BQ96JP2 1530 aa19.23■□□□□ 0.67
MRPS28-207ENST00000521434 SHROOM4Q9ULL8 1493 aa18.98■□□□□ 0.63
MRPS28-207ENST00000521434 CC2D2AQ9P2K1 1620 aa18.96■□□□□ 0.63
MRPS28-207ENST00000521434 CECR2Q9BXF3 1484 aa18.95■□□□□ 0.62
MRPS28-207ENST00000521434 EIF4G1Q04637 1599 aaKnown RBP18.83■□□□□ 0.6
MRPS28-207ENST00000521434 DCAF1Q9Y4B6 1507 aa18.83■□□□□ 0.6
MRPS28-207ENST00000521434 ZCCHC6Q5VYS8 1495 aaKnown RBP18.82■□□□□ 0.6
MRPS28-207ENST00000521434 SCRIBQ14160 1630 aa18.78■□□□□ 0.6
MRPS28-207ENST00000521434 DNAJC5Q9H3Z4 198 aa18.67■□□□□ 0.58
MRPS28-207ENST00000521434 SENP3Q9H4L4 574 aaPredicted RBP18.61■□□□□ 0.57
MRPS28-207ENST00000521434 PHF23Q9BUL5 403 aaPredicted RBP18.54■□□□□ 0.56
MRPS28-207ENST00000521434 CUX2O14529 1486 aa18.26■□□□□ 0.51
MRPS28-207ENST00000521434 ERCC6Q03468 1493 aa18.15■□□□□ 0.5
MRPS28-207ENST00000521434 NCAPD3P42695 1498 aa18.09■□□□□ 0.49
MRPS28-207ENST00000521434 ATAD2BQ9ULI0 1458 aa17.98■□□□□ 0.47
MRPS28-207ENST00000521434 HMGXB3Q12766 1538 aa17.94■□□□□ 0.46
MRPS28-207ENST00000521434 SMARCA2P51531 1590 aa17.94■□□□□ 0.46
MRPS28-207ENST00000521434 NESP48681 1621 aa17.92■□□□□ 0.46
MRPS28-207ENST00000521434 SMARCA4P51532 1647 aa17.89■□□□□ 0.45
MRPS28-207ENST00000521434 THOC2Q8NI27 1593 aaKnown RBP17.84■□□□□ 0.45
MRPS28-207ENST00000521434 BAZ1BQ9UIG0 1483 aaKnown RBP17.79■□□□□ 0.44
MRPS28-207ENST00000521434 LAMC3Q9Y6N6 1575 aa17.77■□□□□ 0.44
MRPS28-207ENST00000521434 BAZ1AQ9NRL2 1556 aaPredicted RBP17.74■□□□□ 0.43
MRPS28-207ENST00000521434 KIF21AQ7Z4S6 1674 aa17.72■□□□□ 0.43
MRPS28-207ENST00000521434 PEG3Q9GZU2 1588 aa17.72■□□□□ 0.43
MRPS28-207ENST00000521434 TRIM41Q8WV44 630 aa17.67■□□□□ 0.42
MRPS28-207ENST00000521434 PDS5BQ9NTI5 1447 aa17.66■□□□□ 0.42
MRPS28-207ENST00000521434 MROH2BQ7Z745 1585 aa17.57■□□□□ 0.4
MRPS28-207ENST00000521434 MRC2Q9UBG0 1479 aa17.53■□□□□ 0.4
MRPS28-207ENST00000521434 CADPSQ9ULU8 1353 aa17.52■□□□□ 0.39
MRPS28-207ENST00000521434 WDR62O43379 1518 aa17.51■□□□□ 0.39
MRPS28-207ENST00000521434 FOXD1Q16676 465 aa17.44■□□□□ 0.38
MRPS28-207ENST00000521434 CEP164Q9UPV0 1460 aa17.39■□□□□ 0.37
MRPS28-207ENST00000521434 OSCARQ8IYS5 282 aa17.36■□□□□ 0.37
MRPS28-207ENST00000521434 WIZO95785 1651 aa17.36■□□□□ 0.37
MRPS28-207ENST00000521434 FANCD2Q9BXW9 1451 aa17.32■□□□□ 0.36
MRPS28-207ENST00000521434 CFTRP13569 1480 aa17.24■□□□□ 0.35
MRPS28-207ENST00000521434 URB2Q14146 1524 aaKnown RBP17.21■□□□□ 0.34
MRPS28-207ENST00000521434 RIMBP3CA6NJZ7 1639 aa17.19■□□□□ 0.34
MRPS28-207ENST00000521434 RIMBP3BA6NNM3 1639 aa17.19■□□□□ 0.34
MRPS28-207ENST00000521434 RIMBP3Q9UFD9 1639 aa17.19■□□□□ 0.34
MRPS28-207ENST00000521434 PRDM2Q13029 1718 aa17.12■□□□□ 0.33
MRPS28-207ENST00000521434 PLPPR3Q6T4P5 718 aa17.11■□□□□ 0.33
MRPS28-207ENST00000521434 TOP2AP11388 1531 aaKnown RBP17.1■□□□□ 0.33
MRPS28-207ENST00000521434 ARHGEF11O15085 1522 aa17.08■□□□□ 0.32
MRPS28-207ENST00000521434 IFT140Q96RY7 1462 aa17.05■□□□□ 0.32
MRPS28-207ENST00000521434 RSF1Q96T23 1441 aaPredicted RBP17.05■□□□□ 0.32
MRPS28-207ENST00000521434 ZNF608Q9ULD9 1512 aaPredicted RBP17.05■□□□□ 0.32
MRPS28-207ENST00000521434 CYB5RLQ6IPT4 315 aa16.97■□□□□ 0.31
MRPS28-207ENST00000521434 TOPBP1Q92547 1522 aa16.96■□□□□ 0.31
MRPS28-207ENST00000521434 EIF4G3O43432 1585 aaKnown RBP16.96■□□□□ 0.31
MRPS28-207ENST00000521434 CHD1O14646 1710 aa16.93■□□□□ 0.3
MRPS28-207ENST00000521434 ABCC8Q09428 1581 aa16.92■□□□□ 0.3
MRPS28-207ENST00000521434 TRHP20396 242 aaPredicted RBP16.9■□□□□ 0.3
MRPS28-207ENST00000521434 CCDC88BA6NC98 1476 aa16.9■□□□□ 0.3
MRPS28-207ENST00000521434 ARAP1Q96P48 1450 aa16.88■□□□□ 0.29
MRPS28-207ENST00000521434 DNMBPQ6XZF7 1577 aa16.87■□□□□ 0.29
MRPS28-207ENST00000521434 TARBP1Q13395 1621 aaKnown RBP16.85■□□□□ 0.29
MRPS28-207ENST00000521434 AQRO60306 1485 aaKnown RBP eCLIP16.85■□□□□ 0.29
MRPS28-207ENST00000521434 FBLN2P98095 1184 aa16.81■□□□□ 0.28
MRPS28-207ENST00000521434 POLA1P09884 1462 aaPredicted RBP16.75■□□□□ 0.27
MRPS28-207ENST00000521434 CLASP1Q7Z460 1538 aa16.7■□□□□ 0.26
MRPS28-207ENST00000521434 RAD54L2Q9Y4B4 1467 aa16.69■□□□□ 0.26
MRPS28-207ENST00000521434 SNAPC4Q5SXM2 1469 aa16.67■□□□□ 0.26
MRPS28-207ENST00000521434 WDR97A6NE52 1622 aa16.67■□□□□ 0.26
MRPS28-207ENST00000521434 TDRD9Q8NDG6 1382 aaKnown RBP16.67■□□□□ 0.26
MRPS28-207ENST00000521434 SOGA1O94964 1423 aa16.67■□□□□ 0.26
MRPS28-207ENST00000521434 SYNJ1O43426 1573 aa16.67■□□□□ 0.26
MRPS28-207ENST00000521434 MAGI1Q96QZ7 1491 aaPredicted RBP16.63■□□□□ 0.25
MRPS28-207ENST00000521434 CHMP7Q8WUX9 453 aaPredicted RBP16.63■□□□□ 0.25
MRPS28-207ENST00000521434 FGD5Q6ZNL6 1462 aa16.6■□□□□ 0.25
MRPS28-207ENST00000521434 GRIN2BQ13224 1484 aa16.58■□□□□ 0.24
MRPS28-207ENST00000521434 SYNJ2O15056 1496 aa16.57■□□□□ 0.24
MRPS28-207ENST00000521434 GAPVD1Q14C86 1478 aa16.54■□□□□ 0.24
MRPS28-207ENST00000521434 CUX1P39880 1505 aa16.53■□□□□ 0.24
MRPS28-207ENST00000521434 PBRM1Q86U86 1689 aa16.53■□□□□ 0.24
MRPS28-207ENST00000521434 POTEDQ86YR6 584 aa16.43■□□□□ 0.22
MRPS28-207ENST00000521434 ABCA5Q8WWZ7 1642 aa16.42■□□□□ 0.22
MRPS28-207ENST00000521434 ERCC6L2Q5T890 1561 aa16.4■□□□□ 0.22
MRPS28-207ENST00000521434 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
MRPS28-207ENST00000521434 GRIN2AQ12879 1464 aa16.37■□□□□ 0.21
MRPS28-207ENST00000521434 PPP6R1Q9UPN7 881 aa16.36■□□□□ 0.21
MRPS28-207ENST00000521434 CEP170Q5SW79 1584 aa16.35■□□□□ 0.21
MRPS28-207ENST00000521434 ADRA2BP18089 450 aa16.35■□□□□ 0.21
MRPS28-207ENST00000521434 KIF13AQ9H1H9 1805 aa16.34■□□□□ 0.21
MRPS28-207ENST00000521434 MSH5O43196 834 aa16.34■□□□□ 0.21
MRPS28-207ENST00000521434 ADAMTS12P58397 1594 aa16.32■□□□□ 0.2
MRPS28-207ENST00000521434 NUP160Q12769 1436 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms