RNA–Protein interactions for RNA: ENST00000520233.1

SDC2-205, Transcript of syndecan 2, humanhuman

TSL 4

Gene SDC2, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC2-205ENST00000520233 NISCHQ9Y2I1 1504 aa42.07■■■■■ 4.33
SDC2-205ENST00000520233 CCDC180Q9P1Z9 1646 aa37.1■■■■□ 3.53
SDC2-205ENST00000520233 ABCC9O60706 1549 aa35.7■■■■□ 3.31
SDC2-205ENST00000520233 ZCCHC6Q5VYS8 1495 aaKnown RBP35.17■■■■□ 3.22
SDC2-205ENST00000520233 DCAF8L2P0C7V8 631 aa34.88■■■■□ 3.17
SDC2-205ENST00000520233 DCAF1Q9Y4B6 1507 aa34.86■■■■□ 3.17
SDC2-205ENST00000520233 MYO15BQ96JP2 1530 aa34.78■■■■□ 3.16
SDC2-205ENST00000520233 NACADO15069 1562 aa34.75■■■■□ 3.15
SDC2-205ENST00000520233 RB1CC1Q8TDY2 1594 aa34.63■■■■□ 3.13
SDC2-205ENST00000520233 SCRIBQ14160 1630 aa33.89■■■■□ 3.02
SDC2-205ENST00000520233 UNC13AQ9UPW8 1703 aa33.8■■■■□ 3
SDC2-205ENST00000520233 SHROOM4Q9ULL8 1493 aa33.59■■■□□ 2.97
SDC2-205ENST00000520233 BICRAQ9NZM4 1560 aa33.55■■■□□ 2.96
SDC2-205ENST00000520233 PABPN1Q86U42 306 aaKnown RBP eCLIP33.49■■■□□ 2.95
SDC2-205ENST00000520233 CECR2Q9BXF3 1484 aa32.7■■■□□ 2.83
SDC2-205ENST00000520233 EIF4G1Q04637 1599 aaKnown RBP32.62■■■□□ 2.81
SDC2-205ENST00000520233 BAZ1AQ9NRL2 1556 aaPredicted RBP32.56■■■□□ 2.8
SDC2-205ENST00000520233 SMARCA4P51532 1647 aa32.49■■■□□ 2.79
SDC2-205ENST00000520233 MROH2BQ7Z745 1585 aa32.43■■■□□ 2.78
SDC2-205ENST00000520233 CC2D2AQ9P2K1 1620 aa32.32■■■□□ 2.76
SDC2-205ENST00000520233 RSF1Q96T23 1441 aaPredicted RBP32.3■■■□□ 2.76
SDC2-205ENST00000520233 DNAJC5BQ9UF47 199 aa32.22■■■□□ 2.75
SDC2-205ENST00000520233 PEG3Q9GZU2 1588 aa32.19■■■□□ 2.74
SDC2-205ENST00000520233 ATAD2BQ9ULI0 1458 aa32.17■■■□□ 2.74
SDC2-205ENST00000520233 SMARCA2P51531 1590 aa32.16■■■□□ 2.74
SDC2-205ENST00000520233 WIZO95785 1651 aa32.08■■■□□ 2.73
SDC2-205ENST00000520233 NCAPD3P42695 1498 aa32.08■■■□□ 2.73
SDC2-205ENST00000520233 HMGXB3Q12766 1538 aa31.96■■■□□ 2.71
SDC2-205ENST00000520233 SUPT5HO00267 1087 aaKnown RBP31.94■■■□□ 2.7
SDC2-205ENST00000520233 BAZ1BQ9UIG0 1483 aaKnown RBP31.94■■■□□ 2.7
SDC2-205ENST00000520233 TOP2AP11388 1531 aaKnown RBP31.81■■■□□ 2.68
SDC2-205ENST00000520233 CCDC88BA6NC98 1476 aa31.44■■■□□ 2.62
SDC2-205ENST00000520233 CADPSQ9ULU8 1353 aa31.17■■■□□ 2.58
SDC2-205ENST00000520233 CFTRP13569 1480 aa31.12■■■□□ 2.57
SDC2-205ENST00000520233 LAMC3Q9Y6N6 1575 aa31.11■■■□□ 2.57
SDC2-205ENST00000520233 NESP48681 1621 aa31.08■■■□□ 2.57
SDC2-205ENST00000520233 PDS5BQ9NTI5 1447 aa30.9■■■□□ 2.54
SDC2-205ENST00000520233 PRDM2Q13029 1718 aa30.87■■■□□ 2.53
SDC2-205ENST00000520233 FANCD2Q9BXW9 1451 aa30.8■■■□□ 2.52
SDC2-205ENST00000520233 ERCC6Q03468 1493 aa30.73■■■□□ 2.51
SDC2-205ENST00000520233 KIF21AQ7Z4S6 1674 aa30.71■■■□□ 2.51
SDC2-205ENST00000520233 CEP164Q9UPV0 1460 aa30.7■■■□□ 2.51
SDC2-205ENST00000520233 MRC2Q9UBG0 1479 aa30.53■■■□□ 2.48
SDC2-205ENST00000520233 THOC2Q8NI27 1593 aaKnown RBP30.46■■■□□ 2.47
SDC2-205ENST00000520233 ABCC8Q09428 1581 aa30.45■■■□□ 2.47
SDC2-205ENST00000520233 URB2Q14146 1524 aaKnown RBP30.45■■■□□ 2.47
SDC2-205ENST00000520233 WRNQ14191 1432 aaPredicted RBP eCLIP30.44■■■□□ 2.46
SDC2-205ENST00000520233 WDR62O43379 1518 aa30.4■■■□□ 2.46
SDC2-205ENST00000520233 DNMBPQ6XZF7 1577 aa30.4■■■□□ 2.46
SDC2-205ENST00000520233 CUX1P39880 1505 aa30.37■■■□□ 2.45
SDC2-205ENST00000520233 TOPBP1Q92547 1522 aa30.37■■■□□ 2.45
SDC2-205ENST00000520233 SYNJ1O43426 1573 aa30.3■■■□□ 2.44
SDC2-205ENST00000520233 TOP2BQ02880 1626 aa30.29■■■□□ 2.44
SDC2-205ENST00000520233 BIVM-ERCC5R4GMW8 1640 aa30.27■■■□□ 2.44
SDC2-205ENST00000520233 CHIC1Q5VXU3 224 aa30.21■■■□□ 2.43
SDC2-205ENST00000520233 CUX2O14529 1486 aa30.19■■■□□ 2.42
SDC2-205ENST00000520233 FGD5Q6ZNL6 1462 aa30.19■■■□□ 2.42
SDC2-205ENST00000520233 POLA1P09884 1462 aaPredicted RBP30.16■■■□□ 2.42
SDC2-205ENST00000520233 TRIM41Q8WV44 630 aa30.15■■■□□ 2.42
SDC2-205ENST00000520233 SOGA1O94964 1423 aa30.06■■■□□ 2.4
SDC2-205ENST00000520233 IFT140Q96RY7 1462 aa30.05■■■□□ 2.4
SDC2-205ENST00000520233 RAD54L2Q9Y4B4 1467 aa30.02■■■□□ 2.4
SDC2-205ENST00000520233 TARBP1Q13395 1621 aaKnown RBP29.99■■■□□ 2.39
SDC2-205ENST00000520233 ABCA10Q8WWZ4 1543 aa29.93■■■□□ 2.38
SDC2-205ENST00000520233 WDR97A6NE52 1622 aa29.88■■■□□ 2.37
SDC2-205ENST00000520233 ZNF608Q9ULD9 1512 aaPredicted RBP29.83■■■□□ 2.37
SDC2-205ENST00000520233 TDRD9Q8NDG6 1382 aaKnown RBP29.81■■■□□ 2.36
SDC2-205ENST00000520233 AQRO60306 1485 aaKnown RBP eCLIP29.75■■■□□ 2.356e-7■■■□□ 15.7
SDC2-205ENST00000520233 KIF27Q86VH2 1401 aa29.75■■■□□ 2.35
SDC2-205ENST00000520233 EIF4G3O43432 1585 aaKnown RBP29.73■■■□□ 2.35
SDC2-205ENST00000520233 ABCA5Q8WWZ7 1642 aa29.73■■■□□ 2.35
SDC2-205ENST00000520233 GAPVD1Q14C86 1478 aa29.72■■■□□ 2.35
SDC2-205ENST00000520233 RUSC2Q8N2Y8 1516 aa29.66■■■□□ 2.34
SDC2-205ENST00000520233 GRIN2BQ13224 1484 aa29.64■■■□□ 2.34
SDC2-205ENST00000520233 EEA1Q15075 1411 aa29.62■■■□□ 2.33
SDC2-205ENST00000520233 ERICH3Q5RHP9 1530 aa29.58■■■□□ 2.33
SDC2-205ENST00000520233 PBRM1Q86U86 1689 aa29.58■■■□□ 2.33
SDC2-205ENST00000520233 IGF1RP08069 1367 aa29.56■■■□□ 2.32
SDC2-205ENST00000520233 FAM9AQ8IZU1 332 aaPredicted RBP29.5■■■□□ 2.31
SDC2-205ENST00000520233 SNAPC4Q5SXM2 1469 aa29.49■■■□□ 2.31
SDC2-205ENST00000520233 CSRNP3Q8WYN3 585 aa29.49■■■□□ 2.31
SDC2-205ENST00000520233 MAGI1Q96QZ7 1491 aaPredicted RBP29.48■■■□□ 2.31
SDC2-205ENST00000520233 CUL7Q14999 1698 aa29.42■■■□□ 2.3
SDC2-205ENST00000520233 FHAD1B1AJZ9 1412 aa29.41■■■□□ 2.3
SDC2-205ENST00000520233 CARMIL1Q5VZK9 1371 aa29.4■■■□□ 2.3
SDC2-205ENST00000520233 ADAMTS12P58397 1594 aa29.4■■■□□ 2.3
SDC2-205ENST00000520233 SYNJ2O15056 1496 aa29.36■■■□□ 2.29
SDC2-205ENST00000520233 PRXQ9BXM0 1461 aa29.35■■■□□ 2.29
SDC2-205ENST00000520233 CHMP7Q8WUX9 453 aaPredicted RBP29.32■■■□□ 2.28
SDC2-205ENST00000520233 RAPGEF2Q9Y4G8 1499 aa29.29■■■□□ 2.28
SDC2-205ENST00000520233 FBLN2P98095 1184 aa29.27■■■□□ 2.28
SDC2-205ENST00000520233 GRIN2AQ12879 1464 aa29.24■■■□□ 2.27
SDC2-205ENST00000520233 KIF21BO75037 1637 aa29.23■■■□□ 2.27
SDC2-205ENST00000520233 CHD1O14646 1710 aa29.22■■■□□ 2.27
SDC2-205ENST00000520233 GOLGA3Q08378 1498 aa29.12■■■□□ 2.25
SDC2-205ENST00000520233 NUP160Q12769 1436 aa29.1■■■□□ 2.25
SDC2-205ENST00000520233 OSCARQ8IYS5 282 aa29.08■■■□□ 2.25
SDC2-205ENST00000520233 CEP170Q5SW79 1584 aa29.06■■■□□ 2.24
SDC2-205ENST00000520233 DNAJC5Q9H3Z4 198 aa29.05■■■□□ 2.24
SDC2-205ENST00000520233 EHMT2Q96KQ7 1210 aa29.04■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms