RNA–Protein interactions for RNA: ENST00000520168.5

SDCBP-207, Transcript of syndecan binding protein, humanhuman

TSL 2 BASIC

Gene SDCBP, Length 1,097 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-207ENST00000520168 AEBP2Q6ZN18 517 aaPredicted RBP16.79■□□□□ 0.28
SDCBP-207ENST00000520168 CHIC1Q5VXU3 224 aa15.87■□□□□ 0.13
SDCBP-207ENST00000520168 SENP3Q9H4L4 574 aaPredicted RBP14.4□□□□□ -0.1
SDCBP-207ENST00000520168 PHF23Q9BUL5 403 aaPredicted RBP14.17□□□□□ -0.14
SDCBP-207ENST00000520168 FOXD1Q16676 465 aa13.4□□□□□ -0.26
SDCBP-207ENST00000520168 NISCHQ9Y2I1 1504 aa12.69□□□□□ -0.38
SDCBP-207ENST00000520168 PLPPR3Q6T4P5 718 aa12.64□□□□□ -0.39
SDCBP-207ENST00000520168 MSH5O43196 834 aa12.63□□□□□ -0.39
SDCBP-207ENST00000520168 POTEDQ86YR6 584 aa12.5□□□□□ -0.41
SDCBP-207ENST00000520168 PIAS4Q8N2W9 510 aaPredicted RBP12.5□□□□□ -0.41
SDCBP-207ENST00000520168 PPP6R1Q9UPN7 881 aa12.41□□□□□ -0.42
SDCBP-207ENST00000520168 ADRA2BP18089 450 aa12.37□□□□□ -0.43
SDCBP-207ENST00000520168 ABCC9O60706 1549 aa11.76□□□□□ -0.53
SDCBP-207ENST00000520168 CCDC180Q9P1Z9 1646 aa11.67□□□□□ -0.54
SDCBP-207ENST00000520168 SCAF1Q9H7N4 1312 aaKnown RBP11.39□□□□□ -0.59
SDCBP-207ENST00000520168 MAPK8IP2Q13387 824 aaPredicted RBP11.39□□□□□ -0.59
SDCBP-207ENST00000520168 DMRT2Q9Y5R5 561 aa11.39□□□□□ -0.59
SDCBP-207ENST00000520168 DNAJC5BQ9UF47 199 aa11.22□□□□□ -0.61
SDCBP-207ENST00000520168 RB1CC1Q8TDY2 1594 aa11.2□□□□□ -0.62
SDCBP-207ENST00000520168 NACADO15069 1562 aa11.04□□□□□ -0.64
SDCBP-207ENST00000520168 PPP4R3CPQ6ZMV5 832 aa11.04□□□□□ -0.64
SDCBP-207ENST00000520168 UNC13AQ9UPW8 1703 aa10.98□□□□□ -0.65
SDCBP-207ENST00000520168 HOXD11P31277 338 aaPredicted RBP10.93□□□□□ -0.66
SDCBP-207ENST00000520168 DCAF8L1A6NGE4 600 aa10.9□□□□□ -0.66
SDCBP-207ENST00000520168 CACNB1Q02641 598 aaPredicted RBP10.89□□□□□ -0.67
SDCBP-207ENST00000520168 CNKSR2Q8WXI2 1034 aa10.89□□□□□ -0.67
SDCBP-207ENST00000520168 PABPN1Q86U42 306 aaKnown RBP eCLIP10.82□□□□□ -0.68
SDCBP-207ENST00000520168 RNF216Q9NWF9 866 aaPredicted RBP10.82□□□□□ -0.68
SDCBP-207ENST00000520168 MYO15BQ96JP2 1530 aa10.82□□□□□ -0.68
SDCBP-207ENST00000520168 BICRAQ9NZM4 1560 aa10.82□□□□□ -0.68
SDCBP-207ENST00000520168 SHROOM4Q9ULL8 1493 aa10.77□□□□□ -0.69
SDCBP-207ENST00000520168 RNF39Q9H2S5 420 aa10.74□□□□□ -0.69
SDCBP-207ENST00000520168 CC2D2AQ9P2K1 1620 aa10.7□□□□□ -0.7
SDCBP-207ENST00000520168 DCAF8L2P0C7V8 631 aa10.7□□□□□ -0.7
SDCBP-207ENST00000520168 CECR2Q9BXF3 1484 aa10.68□□□□□ -0.7
SDCBP-207ENST00000520168 DNAJC5Q9H3Z4 198 aa10.63□□□□□ -0.71
SDCBP-207ENST00000520168 NCBP3Q53F19 620 aaKnown RBP10.62□□□□□ -0.71
SDCBP-207ENST00000520168 C1QBPQ07021 282 aaKnown RBP10.61□□□□□ -0.71
SDCBP-207ENST00000520168 EIF4G1Q04637 1599 aaKnown RBP10.6□□□□□ -0.71
SDCBP-207ENST00000520168 DCAF1Q9Y4B6 1507 aa10.54□□□□□ -0.72
SDCBP-207ENST00000520168 SCRIBQ14160 1630 aa10.47□□□□□ -0.73
SDCBP-207ENST00000520168 ZCCHC6Q5VYS8 1495 aaKnown RBP10.46□□□□□ -0.74
SDCBP-207ENST00000520168 NPM3O75607 178 aaKnown RBP10.41□□□□□ -0.74
SDCBP-207ENST00000520168 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.4□□□□□ -0.74
SDCBP-207ENST00000520168 CUX2O14529 1486 aa10.39□□□□□ -0.75
SDCBP-207ENST00000520168 ERCC6Q03468 1493 aa10.24□□□□□ -0.77
SDCBP-207ENST00000520168 U3KPZ7 1027 aaPredicted RBP10.15□□□□□ -0.78
SDCBP-207ENST00000520168 NCAPD3P42695 1498 aa10.14□□□□□ -0.79
SDCBP-207ENST00000520168 HMGXB3Q12766 1538 aa10.1□□□□□ -0.79
SDCBP-207ENST00000520168 KCNA4P22459 653 aa10.09□□□□□ -0.79
SDCBP-207ENST00000520168 THOC2Q8NI27 1593 aaKnown RBP10.09□□□□□ -0.79
SDCBP-207ENST00000520168 SMARCA2P51531 1590 aa10.07□□□□□ -0.8
SDCBP-207ENST00000520168 ATAD2BQ9ULI0 1458 aa10.04□□□□□ -0.8
SDCBP-207ENST00000520168 CAPN15O75808 1086 aa10.04□□□□□ -0.8
SDCBP-207ENST00000520168 SPINK5Q9NQ38 1064 aaPredicted RBP10.03□□□□□ -0.8
SDCBP-207ENST00000520168 LAMC3Q9Y6N6 1575 aa10.03□□□□□ -0.8
SDCBP-207ENST00000520168 DSG3P32926 999 aa10.02□□□□□ -0.81
SDCBP-207ENST00000520168 NESP48681 1621 aa10□□□□□ -0.81
SDCBP-207ENST00000520168 SMARCA4P51532 1647 aa10□□□□□ -0.81
SDCBP-207ENST00000520168 KIF21AQ7Z4S6 1674 aa9.99□□□□□ -0.81
SDCBP-207ENST00000520168 TRIM41Q8WV44 630 aa9.98□□□□□ -0.81
SDCBP-207ENST00000520168 SLC4A2P04920 1241 aa9.97□□□□□ -0.81
SDCBP-207ENST00000520168 BAZ1BQ9UIG0 1483 aaKnown RBP9.95□□□□□ -0.82
SDCBP-207ENST00000520168 PEG3Q9GZU2 1588 aa9.95□□□□□ -0.82
SDCBP-207ENST00000520168 PDS5BQ9NTI5 1447 aa9.93□□□□□ -0.82
SDCBP-207ENST00000520168 APLP2Q06481 763 aa9.93□□□□□ -0.82
SDCBP-207ENST00000520168 BAZ1AQ9NRL2 1556 aaPredicted RBP9.92□□□□□ -0.82
SDCBP-207ENST00000520168 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.88□□□□□ -0.83
SDCBP-207ENST00000520168 HNRNPUL2Q1KMD3 747 aaKnown RBP9.88□□□□□ -0.83
SDCBP-207ENST00000520168 WDR62O43379 1518 aa9.87□□□□□ -0.83
SDCBP-207ENST00000520168 ZNF219Q9P2Y4 722 aaPredicted RBP9.86□□□□□ -0.83
SDCBP-207ENST00000520168 MRC2Q9UBG0 1479 aa9.85□□□□□ -0.83
SDCBP-207ENST00000520168 TRHP20396 242 aaPredicted RBP9.84□□□□□ -0.83
SDCBP-207ENST00000520168 SAMD1Q6SPF0 538 aaPredicted RBP9.81□□□□□ -0.84
SDCBP-207ENST00000520168 CADPSQ9ULU8 1353 aa9.79□□□□□ -0.84
SDCBP-207ENST00000520168 POTEHQ6S545 545 aa9.78□□□□□ -0.84
SDCBP-207ENST00000520168 ABCB7O75027 752 aa9.77□□□□□ -0.85
SDCBP-207ENST00000520168 OSCARQ8IYS5 282 aa9.77□□□□□ -0.85
SDCBP-207ENST00000520168 CEP164Q9UPV0 1460 aa9.76□□□□□ -0.85
SDCBP-207ENST00000520168 RIMBP3CA6NJZ7 1639 aa9.74□□□□□ -0.85
SDCBP-207ENST00000520168 RIMBP3BA6NNM3 1639 aa9.74□□□□□ -0.85
SDCBP-207ENST00000520168 RIMBP3Q9UFD9 1639 aa9.74□□□□□ -0.85
SDCBP-207ENST00000520168 MROH2BQ7Z745 1585 aa9.72□□□□□ -0.85
SDCBP-207ENST00000520168 FANCD2Q9BXW9 1451 aa9.69□□□□□ -0.86
SDCBP-207ENST00000520168 PRDM2Q13029 1718 aa9.68□□□□□ -0.86
SDCBP-207ENST00000520168 MYCNP04198 464 aaPredicted RBP9.67□□□□□ -0.86
SDCBP-207ENST00000520168 ARHGEF11O15085 1522 aa9.66□□□□□ -0.86
SDCBP-207ENST00000520168 CFTRP13569 1480 aa9.64□□□□□ -0.87
SDCBP-207ENST00000520168 WIZO95785 1651 aa9.64□□□□□ -0.87
SDCBP-207ENST00000520168 URB2Q14146 1524 aaKnown RBP9.61□□□□□ -0.87
SDCBP-207ENST00000520168 RBM42Q9BTD8 480 aaKnown RBP9.6□□□□□ -0.87
SDCBP-207ENST00000520168 IFT140Q96RY7 1462 aa9.57□□□□□ -0.88
SDCBP-207ENST00000520168 POLA2Q14181 598 aa9.56□□□□□ -0.88
SDCBP-207ENST00000520168 CHD1O14646 1710 aa9.56□□□□□ -0.88
SDCBP-207ENST00000520168 EIF4G3O43432 1585 aaKnown RBP9.54□□□□□ -0.88
SDCBP-207ENST00000520168 RSF1Q96T23 1441 aaPredicted RBP9.53□□□□□ -0.88
SDCBP-207ENST00000520168 TOP2AP11388 1531 aaKnown RBP9.52□□□□□ -0.88
SDCBP-207ENST00000520168 SLC4A1APQ9BWU0 796 aaKnown RBP9.52□□□□□ -0.89
SDCBP-207ENST00000520168 ZNF608Q9ULD9 1512 aaPredicted RBP9.51□□□□□ -0.89
SDCBP-207ENST00000520168 ABCC8Q09428 1581 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms